iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cja-019879

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

ACFV01135113

Gene Name

PRPF19

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCJAG00000016509.2	ENSCJAT00000032174.2	ENSCJAP00000030447.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	6.90e-15	55.8	3	58
E3 adaptor/Cullin RING/DCX/DWD	8.60e-32	108.8	391	424
UBD/Beta-Prp	3.00e-53	181.9	233	462

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 6    flCpIslelMrdPvvlp.sGitydrssIekwlasggktcPvtrqplteedlvPnltl 61
           ++C+Is+e++++P+v+p s+++y+r+ Iek++a++g+ +P+++qpl+ee+l++ +++
   Q: 3    LICSISNEVPEHPCVSPvSNHVYERRLIEKYIAENGT-DPINNQPLSEEQLIDIKAV 58
           79**********************************9.**************98875 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrt 32
           gH++++t++af  ++ +l++++dD ++k+WDlr+
   Q: 391  GHSGPITSIAFseNGYYLATAADDSSVKLWDLRK 424
           8**********976699**************986 PP

UBD/Beta-Prp

   S: 20   pdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdk 108
            d++ ++tg++d+ + v+d ++++ l++l+gh+++vt+v f+p++++  ++s D+ti++w++ + +cv+++++he+ v+ ls++++gd+
   Q: 233  SDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDY 321
           68899************************************************************************************ PP
   S: 109  lvsGshdrtirvwdletgqclee.tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelv 196
           l+s s+d++    d++tg +l + t++    + +c+++hpdg ++ +G+ D+++++Wdlk  + +  + g h ++++s++f++ng +l+
   Q: 322  LLSSSDDQYWAFSDIQTGRVLTKvTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPG-HSGPITSIAFSENGYYLA 409
           *********************997777777789************************************9.****************** PP
   S: 197  sgsldgtvklwdlqtgecvrtlng.htdnvksvrfspnderlvsgssDgsiri 248
           ++++d++vklwdl++ +  +tl+   +  vks+ f++ +++l+ g+ D +i+i
   Q: 410  TAADDSSVKLWDLRKLKNFKTLQLdSNFEVKSLIFDQSGTYLALGGTDVQIYI 462
           **************999999999725557*******************99987 PP

Organism

Callithrix jacchus

Protein Sequence
(Fasta)

MSLICSISNE VPEHPCVSPV SNHVYERRLI EKYIAENGTD PINNQPLSEE QLIDIKAVAH 60
PIRPKPPSAT SIPAILKALQ DEWDAVMLHS FTLRQQLQTT RQELSHALYQ HDAACRVIAR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGCAATTTC CGTTAGGTGC TGAAGGCTGT GGCGCGCGGC TGTTCCCATT CCCACGTGAA 60
GCGCTACGCT AGCATCGCTC TGCGAGCGGC TCCCAGCTTG CCGCCGAGCA GTCCCGGCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR013915--Pre-mRNA_splic_Prp19
IPR000772--Ricin_B_lectin
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50231--RICIN_B_LECTIN
PS51698--U_BOX
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08606--Prp19
PF04564--U-box
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0005737--C:cytoplasm
GO:0005662--C:DNA replication factor A complex
GO:0005811--C:lipid particle
GO:0016020--C:membrane
GO:0016607--C:nuclear speck
GO:0000974--C:Prp19 complex
GO:0035861--C:site of double-strand break
GO:0034450--F:ubiquitin-ubiquitin ligase activity
GO:0034613--P:cellular protein localization
GO:0006303--P:double-strand break repair via nonhomologous end joining
GO:0001833--P:inner cell mass cell proliferation
GO:0008610--P:lipid biosynthetic process
GO:0045665--P:negative regulation of neuron differentiation
GO:0048711--P:positive regulation of astrocyte differentiation
GO:0048026--P:positive regulation of mRNA splicing, via spliceosome
GO:0010498--P:proteasomal protein catabolic process
GO:0070534--P:protein K63-linked ubiquitination
GO:0072422--P:signal transduction involved in DNA damage checkpoint
GO:0000245--P:spliceosomal complex assembly
GO:0000244--P:spliceosomal tri-snRNP complex assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000488	Aegilops tauschii	39.42	7.00e-97	349.00
IUUC-Aml-001230	Ailuropoda melanoleuca	95.80	0.00e+00	951.00
IUUC-Atr-002594	Amborella trichopoda	44.15	7.00e-118	417.00
IUUC-Apl-003686	Anas platyrhynchos	87.62	0.00e+00	730.00
IUUC-Aca-005272	Anolis carolinensis	97.03	0.00e+00	995.00
IUUC-Aly-005586	Arabidopsis lyrata	44.32	2.00e-118	419.00
IUUC-Ath-007696	Arabidopsis thaliana	44.10	1.00e-114	406.00
IUUC-Acl-008335	Aspergillus clavatus	35.67	2.00e-67	249.00
IUUC-Afl-008527	Aspergillus flavus	37.89	1.00e-71	263.00
IUUC-Afu-008957	Aspergillus fumigatus	37.90	1.00e-78	287.00
IUUC-Ani-009280	Aspergillus nidulans	37.77	3.00e-66	245.00
IUUC-Ang-009746	Aspergillus niger	36.63	1.00e-66	247.00
IUUC-Aor-009905	Aspergillus oryzae	37.68	3.00e-75	275.00
IUUC-Ate-010412	Aspergillus terreus	38.32	2.00e-65	243.00
IUUC-Ame-011561	Astyanax mexicanus	87.14	3.00e-110	390.00
IUUC-Bgr-012283	Blumeria graminis	32.78	9.00e-56	211.00
IUUC-Bta-013242	Bos taurus	99.41	0.00e+00	1009.00
IUUC-Bci-013901	Botrytis cinerea	33.73	6.00e-64	238.00
IUUC-Bdi-014277	Brachypodium distachyon	43.87	8.00e-123	434.00
IUUC-Bol-016207	Brassica oleracea	45.45	9.00e-118	417.00
IUUC-Bra-017650	Brassica rapa	44.23	3.00e-115	409.00
IUUC-Cel-018271	Caenorhabditis elegans	51.38	3.00e-153	534.00
IUUC-Cfa-020175	Canis familiaris	99.01	0.00e+00	1007.00
IUUC-Cpo-022379	Cavia porcellus	99.01	0.00e+00	1006.00
IUUC-Cre-022993	Chlamydomonas reinhardtii	40.08	7.00e-98	350.00
IUUC-Csa-023500	Chlorocebus sabaeus	99.60	0.00e+00	1011.00
IUUC-Cho-025065	Choloepus hoffmanni	87.82	1.00e-148	518.00
IUUC-Cin-025699	Ciona intestinalis	68.26	5.00e-175	607.00
IUUC-Csv-026128	Ciona savignyi	65.52	0.00e+00	679.00
IUUC-Cgl-026507	Colletotrichum gloeosporioides	33.14	3.00e-64	239.00
IUUC-Cne-026860	Cryptococcus neoformans	38.16	6.00e-95	341.00
IUUC-Dre-028187	Danio rerio	84.58	0.00e+00	857.00
IUUC-Dno-029453	Dasypus novemcinctus	99.41	0.00e+00	1009.00
IUUC-Dor-030150	Dipodomys ordii	99.16	1.00e-128	453.00
IUUC-Dse-031220	Dothistroma septosporum	32.43	1.00e-57	217.00
IUUC-Dme-031906	Drosophila melanogaster	65.81	0.00e+00	662.00
IUUC-Ete-033035	Echinops telfairi	86.53	0.00e+00	855.00
IUUC-Eca-033478	Equus caballus	99.21	0.00e+00	1007.00
IUUC-Eeu-034974	Erinaceus europaeus	99.39	0.00e+00	679.00
IUUC-Fca-036194	Felis catus	98.21	0.00e+00	996.00
IUUC-Fal-037417	Ficedula albicollis	96.83	0.00e+00	993.00
IUUC-Fox-037922	Fusarium oxysporum	34.39	8.00e-64	237.00
IUUC-Fso-038256	Fusarium solani	34.41	3.00e-65	242.00
IUUC-Gmo-038713	Gadus morhua	85.97	0.00e+00	873.00
IUUC-Ggr-039854	Gaeumannomyces graminis	31.61	8.00e-54	204.00
IUUC-Gga-041143	Gallus gallus	97.23	0.00e+00	995.00
IUUC-Gac-042129	Gasterosteus aculeatus	84.58	0.00e+00	887.00
IUUC-Gma-044273	Glycine max	45.87	2.00e-120	426.00
IUUC-Ggo-045262	Gorilla gorilla	99.60	0.00e+00	1011.00
IUUC-Hsa-046036	Homo sapiens	99.60	0.00e+00	1011.00
IUUC-Hvu-047442	Hordeum vulgare	42.68	4.00e-67	248.00
IUUC-Itr-048169	Ictidomys tridecemlineatus	99.01	0.00e+00	966.00
IUUC-Lch-050105	Latimeria chalumnae	89.90	0.00e+00	935.00
IUUC-Lpe-050976	Leersia perrieri	44.53	6.00e-119	421.00
IUUC-Loc-052042	Lepisosteus oculatus	74.04	0.00e+00	661.00
IUUC-Lma-053143	Leptosphaeria maculans	34.52	2.00e-63	238.00
IUUC-Laf-053451	Loxodonta africana	95.98	0.00e+00	998.00
IUUC-Mcc-055786	Macaca mulatta	99.60	0.00e+00	1011.00
IUUC-Meu-056161	Macropus eugenii	99.17	2.00e-141	495.00
IUUC-Mor-057215	Magnaporthe oryzae	33.60	2.00e-56	213.00
IUUC-Mpo-057419	Magnaporthe poae	30.65	2.00e-50	193.00
IUUC-Mtr-057756	Medicago truncatula	43.99	5.00e-115	407.00
IUUC-Mla-059085	Melampsora laricipopulina	38.39	9.00e-87	314.00
IUUC-Mga-060158	Meleagris gallopavo	90.58	0.00e+00	889.00
IUUC-Mvi-060441	Microbotryum violaceum	37.62	3.00e-79	289.00
IUUC-Mmr-061085	Microcebus murinus	99.60	0.00e+00	1011.00
IUUC-Mdo-061804	Monodelphis domestica	99.21	0.00e+00	1009.00
IUUC-Mmu-063608	Mus musculus	95.42	0.00e+00	993.00
IUUC-Mac-064972	Musa acuminata	44.15	8.00e-116	410.00
IUUC-Mpu-065700	Mustela putorius furo	99.01	0.00e+00	1007.00
IUUC-Mlu-068223	Myotis lucifugus	94.62	0.00e+00	985.00
IUUC-Nfi-068504	Neosartorya fischeri	37.70	2.00e-78	286.00
IUUC-Ncr-068729	Neurospora crassa	36.82	2.00e-62	233.00
IUUC-Nle-069754	Nomascus leucogenys	99.60	0.00e+00	1011.00
IUUC-Opr-070621	Ochotona princeps	95.38	0.00e+00	946.00
IUUC-Ont-071377	Oreochromis niloticus	84.58	0.00e+00	865.00
IUUC-Oan-073498	Ornithorhynchus anatinus	73.31	1.00e-123	435.00
IUUC-Ocu-074182	Oryctolagus cuniculus	95.63	0.00e+00	998.00
IUUC-Oba-075509	Oryza barthii	43.87	7.00e-121	427.00
IUUC-Obr-076480	Oryza brachyantha	44.64	1.00e-121	430.00
IUUC-Ogl-077052	Oryza glaberrima	43.87	7.00e-121	427.00
IUUC-Ogu-078919	Oryza glumaepatula	43.87	7.00e-121	427.00
IUUC-Oin-079357	Oryza indica	43.16	6.00e-114	404.00
IUUC-Olo-080376	Oryza longistaminata	43.65	8.00e-109	387.00
IUUC-Ome-081973	Oryza meridionalis	43.15	1.00e-108	387.00
IUUC-Oni-082849	Oryza nivara	44.06	2.00e-121	429.00
IUUC-Opu-083243	Oryza punctata	43.49	6.00e-120	424.00
IUUC-Oru-084613	Oryza rufipogon	44.15	7.00e-121	427.00
IUUC-Osa-085407	Oryza sativa	43.85	2.00e-120	426.00
IUUC-Ola-086566	Oryzias latipes	83.76	0.00e+00	855.00
IUUC-Olu-087757	Ostreococcus lucimarinus	39.24	2.00e-93	336.00
IUUC-Oga-089010	Otolemur garnettii	94.88	0.00e+00	957.00
IUUC-Oar-089638	Ovis aries	99.41	0.00e+00	1009.00
IUUC-Ptr-091141	Pan troglodytes	99.60	0.00e+00	1011.00
IUUC-Pan-092662	Papio anubis	99.60	0.00e+00	1011.00
IUUC-Psi-093777	Pelodiscus sinensis	97.14	0.00e+00	822.00
IUUC-Pno-095115	Phaeosphaeria nodorum	35.01	2.00e-64	239.00
IUUC-Ppa-095841	Physcomitrella patens	44.51	1.00e-118	419.00
IUUC-Pfo-096390	Poecilia formosa	83.79	0.00e+00	864.00
IUUC-Pab-098250	Pongo abelii	97.94	0.00e+00	944.00
IUUC-Pop-099854	Populus trichocarpa	45.19	4.00e-119	421.00
IUUC-Pca-100553	Procavia capensis	99.01	0.00e+00	1002.00
IUUC-Ppe-101383	Prunus persica	44.12	3.00e-113	402.00
IUUC-Pva-102189	Pteropus vampyrus	99.21	0.00e+00	1008.00
IUUC-Pgr-103304	Puccinia graminis	37.19	5.00e-85	308.00
IUUC-Ptt-103984	Puccinia triticina	38.07	2.00e-90	325.00
IUUC-Pte-104385	Pyrenophora teres	33.26	2.00e-68	253.00
IUUC-Pyt-104697	Pyrenophora triticirepentis	33.68	1.00e-69	257.00
IUUC-Rno-105581	Rattus norvegicus	99.01	0.00e+00	1007.00
IUUC-Sha-107071	Sarcophilus harrisii	95.07	0.00e+00	995.00
IUUC-Sja-107697	Schizosaccharomyces japonicus	31.39	2.00e-34	140.00
IUUC-Spo-108315	Schizosaccharomyces pombe	32.33	3.00e-44	172.00
IUUC-Ssl-108628	Sclerotinia sclerotiorum	35.09	2.00e-63	236.00
IUUC-Smo-109648	Selaginella moellendorffii	44.87	1.00e-120	426.00
IUUC-Sit-109873	Setaria italica	43.87	7.00e-119	421.00
IUUC-Sly-111673	Solanum lycopersicum	45.26	2.00e-111	395.00
IUUC-Stu-112125	Solanum tuberosum	45.07	9.00e-111	394.00
IUUC-Sbi-114696	Sorghum bicolor	42.46	3.00e-107	382.00
IUUC-Sre-115134	Sporisorium reilianum	31.47	4.00e-73	268.00
IUUC-Ssc-116260	Sus scrofa	99.21	0.00e+00	1008.00
IUUC-Tgu-116533	Taeniopygia guttata	97.23	0.00e+00	995.00
IUUC-Tru-117800	Takifugu rubripes	83.99	0.00e+00	889.00
IUUC-Tsy-118980	Tarsius syrichta	93.69	0.00e+00	917.00
IUUC-Tni-120334	Tetraodon nigroviridis	67.59	0.00e+00	696.00
IUUC-Tca-121807	Theobroma cacao	44.04	3.00e-119	422.00
IUUC-Tre-121920	Trichoderma reesei	33.54	9.00e-63	234.00
IUUC-Tvi-122294	Trichoderma virens	32.77	2.00e-54	206.00
IUUC-Tae-125713	Triticum aestivum	44.25	1.00e-123	436.00
IUUC-Tur-126664	Triticum urartu	39.82	3.00e-113	402.00
IUUC-Tme-127026	Tuber melanosporum	34.41	9.00e-68	251.00
IUUC-Tbe-127582	Tupaia belangeri	99.70	0.00e+00	679.00
IUUC-Ttr-128313	Tursiops truncatus	99.01	0.00e+00	999.00
IUUC-Uma-129626	Ustilago maydis	33.33	9.00e-76	277.00
IUUC-Vda-129699	Verticillium dahliae	35.28	1.00e-66	247.00
IUUC-Vpa-130593	Vicugna pacos	98.68	0.00e+00	896.00
IUUC-Vvi-131668	Vitis vinifera	44.32	5.00e-119	421.00
IUUC-Xtr-132186	Xenopus tropicalis	85.23	0.00e+00	765.00
IUUC-Xma-133212	Xiphophorus maculatus	83.60	0.00e+00	859.00
IUUC-Yli-134607	Yarrowia lipolytica	57.14	4.00e-40	156.00
IUUC-Zma-135662	Zea mays	45.11	4.00e-121	428.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence