iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Gma-044307

Ensembl Protein ID

GLYMA12G28910.1

UniProt Accession

I1LTD5; I1LTD5_SOYBN

Genbank Protein ID

KRH26329.1

Protein Name

Ribosome biogenesis protein BOP1 homolog

Genbank Nucleotide ID

CM000845

Gene Name

LOC100803648; GLYMA_12G167800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA12G28910	GLYMA12G28910.1	GLYMA12G28910.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-13	51.9	381	419

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+d vt++++  s+  ++sGs Dgt+++W++ tg++l+
   Q: 381  GHEDAVTSISLeaSGQWMASGSSDGTVRIWEVETGRCLR 419
           8***********887889*******************96 PP

Organism

Glycine max

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MKGKKNTMTK NDVEDDGAPV PSPTVSDSDS DYEDSSADDD DKSSDSLDSQ SESELEDASP 60
ENGGSGDVES AEDEDTVNDE DGGSESSDLH QEGAESDSSE DEVAPRNTIG DVPLKWYEDE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGTTGATGAT TGTTGGGCCT AGCAAACAAG CCGAAAGTAT AAGAAATCAA ATTGCGGCTG 60
GGTGGGCAAG TAAAACCCTT TCCCTCCTCC AAACAAAACC CTAACTCTCC CTACCTTTGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

gmx:100803648

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003171	Amborella trichopoda	64.61	1.00e-149	523.00
IUUC-Aly-005649	Arabidopsis lyrata	71.52	0.00e+00	913.00
IUUC-Ath-007625	Arabidopsis thaliana	69.14	0.00e+00	889.00
IUUC-Afu-009083	Aspergillus fumigatus	40.59	2.00e-119	423.00
IUUC-Ame-011767	Astyanax mexicanus	51.83	9.00e-64	236.00
IUUC-Bta-013569	Bos taurus	45.44	5.00e-149	521.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	48.58	4.00e-162	564.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	39.31	4.00e-109	389.00
IUUC-Dor-031031	Dipodomys ordii	44.51	6.00e-151	527.00
IUUC-Dme-031786	Drosophila melanogaster	43.12	3.00e-150	525.00
IUUC-Fox-037973	Fusarium oxysporum	40.68	9.00e-145	507.00
IUUC-Fso-038187	Fusarium solani	40.54	2.00e-142	499.00
IUUC-Ggr-039746	Gaeumannomyces graminis	40.52	2.00e-145	509.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	45.53	2.00e-148	519.00
IUUC-Mor-057135	Magnaporthe oryzae	41.97	2.00e-140	492.00
IUUC-Mla-059149	Melampsora laricipopulina	43.74	3.00e-139	488.00
IUUC-Mmr-061674	Microcebus murinus	45.22	2.00e-143	503.00
IUUC-Mac-064535	Musa acuminata	62.86	2.00e-176	612.00
IUUC-Mlu-067795	Myotis lucifugus	43.91	8.00e-142	497.00
IUUC-Oar-090058	Ovis aries	49.10	5.00e-46	179.00
IUUC-Ppa-095528	Physcomitrella patens	56.25	7.00e-144	504.00
IUUC-Pgr-103525	Puccinia graminis	42.06	5.00e-125	442.00
IUUC-Sce-106381	Saccharomyces cerevisiae	40.03	8.00e-138	484.00
IUUC-Spo-108071	Schizosaccharomyces pombe	40.81	2.00e-127	449.00
IUUC-Sly-110970	Solanum lycopersicum	74.03	7.00e-148	517.00
IUUC-Stu-112593	Solanum tuberosum	73.42	0.00e+00	969.00
IUUC-Sar-113123	Sorex araneus	43.71	2.00e-65	242.00
IUUC-Uma-129556	Ustilago maydis	39.73	1.00e-126	447.00
IUUC-Vvi-131211	Vitis vinifera	72.66	0.00e+00	979.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence