iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.00e-11	43.3	429	467

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvl 35
           gH +s t ++f   ++ ++++sG+dD+  ++W++++g l
   Q: 429  GHVNSHTPIEFgidPSeRFILSGGDDCYTRIWSIKSGQL 467
           788888999****9666****************999865 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MVSDEKEHRE QSRLQVRHNM KPELPGFYYD EEKNRYFPIK GPIPGAKSSS SSRTKQKPEP 60
KPEQETNYQK RTKLKALKLV YSRELNGNVI SVNKKMSNFR DEIQKTQASY PVVWRYGSTE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAGCTATTT ATATGGCGCA TGTTAGCCTT TAATGGTGTC TGATGAGAAA GAACACAGAG 60
AACAGAGTCG ACTCCAAGTC CGACACAACA TGAAACCAGG TCTGAATCTT CTTCCTCGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001176	Aegilops tauschii	35.09	1.00e-34	139.00
IUUC-Aml-001929	Ailuropoda melanoleuca	30.67	8.00e-15	74.30
IUUC-Atr-002556	Amborella trichopoda	41.74	9.00e-94	336.00
IUUC-Apl-003177	Anas platyrhynchos	28.73	7.00e-16	77.80
IUUC-Aca-004610	Anolis carolinensis	29.28	5.00e-16	78.60
IUUC-Aly-005883	Arabidopsis lyrata	77.53	0.00e+00	811.00
IUUC-Aor-010226	Aspergillus oryzae	59.09	4.00e-03	35.00
IUUC-Ame-010690	Astyanax mexicanus	24.24	1.00e-17	83.60
IUUC-Bta-012668	Bos taurus	30.67	1.00e-15	77.40
IUUC-Bdi-014848	Brachypodium distachyon	31.79	2.00e-58	218.00
IUUC-Bol-016035	Brassica oleracea	70.74	0.00e+00	700.00
IUUC-Bra-016687	Brassica rapa	67.65	0.00e+00	657.00
IUUC-Cja-019560	Callithrix jacchus	38.03	1.00e-10	58.50
IUUC-Cfa-020441	Canis familiaris	30.67	8.00e-15	74.30
IUUC-Cpo-021299	Cavia porcellus	29.94	5.00e-15	75.10
IUUC-Csa-023185	Chlorocebus sabaeus	23.27	1.00e-17	84.00
IUUC-Cho-024353	Choloepus hoffmanni	29.38	7.00e-15	74.70
IUUC-Dno-029890	Dasypus novemcinctus	31.29	6.00e-17	81.60
IUUC-Eca-033466	Equus caballus	23.29	1.00e-17	83.60
IUUC-Eeu-034995	Erinaceus europaeus	30.10	4.00e-16	78.20
IUUC-Fca-036199	Felis catus	30.67	9.00e-15	74.30
IUUC-Fal-036717	Ficedula albicollis	28.73	2.00e-15	76.60
IUUC-Gmo-039201	Gadus morhua	29.19	4.00e-14	72.40
IUUC-Gga-040398	Gallus gallus	29.28	9.00e-16	77.80
IUUC-Gac-042391	Gasterosteus aculeatus	26.21	9.00e-22	97.80
IUUC-Gma-043880	Glycine max	44.76	2.00e-109	388.00
IUUC-Ggo-045348	Gorilla gorilla	23.48	2.00e-18	86.70
IUUC-Hsa-046746	Homo sapiens	23.48	3.00e-18	85.90
IUUC-Hvu-047825	Hordeum vulgare	35.37	4.00e-61	228.00
IUUC-Itr-048472	Ictidomys tridecemlineatus	30.06	6.00e-15	75.10
IUUC-Lch-050272	Latimeria chalumnae	29.28	2.00e-14	73.20
IUUC-Lpe-051618	Leersia perrieri	32.46	4.00e-67	248.00
IUUC-Loc-051772	Lepisosteus oculatus	33.52	5.00e-20	91.70
IUUC-Laf-054577	Loxodonta africana	28.25	7.00e-13	68.20
IUUC-Mcc-055284	Macaca mulatta	30.06	6.00e-15	74.70
IUUC-Mtr-058472	Medicago truncatula	43.66	3.00e-99	355.00
IUUC-Mga-059238	Meleagris gallopavo	29.83	2.00e-16	79.70
IUUC-Mmr-061642	Microcebus murinus	28.81	2.00e-13	69.70
IUUC-Mdo-062030	Monodelphis domestica	31.49	2.00e-15	76.60
IUUC-Mmu-063420	Mus musculus	32.32	5.00e-16	78.60
IUUC-Mac-065231	Musa acuminata	39.51	6.00e-85	307.00
IUUC-Mpu-065692	Mustela putorius furo	30.67	1.00e-14	73.90
IUUC-Mlu-067428	Myotis lucifugus	23.08	1.00e-15	77.00
IUUC-Nle-070145	Nomascus leucogenys	23.06	2.00e-17	83.20
IUUC-Opr-071081	Ochotona princeps	30.67	2.00e-14	73.60
IUUC-Ont-071302	Oreochromis niloticus	31.61	2.00e-16	80.10
IUUC-Oan-073494	Ornithorhynchus anatinus	28.86	9.00e-07	47.80
IUUC-Ocu-073925	Oryctolagus cuniculus	23.69	5.00e-16	78.60
IUUC-Oba-075797	Oryza barthii	34.26	2.00e-67	249.00
IUUC-Obr-076014	Oryza brachyantha	33.64	4.00e-69	254.00
IUUC-Ogl-077201	Oryza glaberrima	37.63	2.00e-42	166.00
IUUC-Ogu-078056	Oryza glumaepatula	34.07	2.00e-66	245.00
IUUC-Oin-080062	Oryza indica	33.96	2.00e-67	248.00
IUUC-Olo-080869	Oryza longistaminata	33.75	1.00e-59	224.00
IUUC-Ome-081820	Oryza meridionalis	34.94	1.00e-74	273.00
IUUC-Oni-082497	Oryza nivara	33.77	7.00e-66	244.00
IUUC-Opu-083780	Oryza punctata	30.83	5.00e-27	116.00
IUUC-Oru-085091	Oryza rufipogon	34.26	4.00e-70	258.00
IUUC-Osa-085725	Oryza sativa	34.26	4.00e-70	258.00
IUUC-Ola-087033	Oryzias latipes	32.31	2.00e-17	82.80
IUUC-Oga-088861	Otolemur garnettii	22.88	1.00e-16	80.50
IUUC-Oar-090048	Ovis aries	31.29	5.00e-15	75.10
IUUC-Ptr-091658	Pan troglodytes	23.48	3.00e-18	85.90
IUUC-Pan-092570	Papio anubis	29.94	9.00e-15	73.90
IUUC-Psi-093421	Pelodiscus sinensis	22.83	4.00e-19	88.60
IUUC-Pma-094216	Petromyzon marinus	24.18	2.00e-16	79.30
IUUC-Ppa-095186	Physcomitrella patens	31.50	6.00e-60	224.00
IUUC-Pfo-096178	Poecilia formosa	29.61	6.00e-14	71.60
IUUC-Pab-098037	Pongo abelii	31.49	3.00e-12	65.90
IUUC-Pop-099334	Populus trichocarpa	57.75	2.00e-60	224.00
IUUC-Pca-100845	Procavia capensis	29.94	6.00e-15	74.70
IUUC-Pva-103203	Pteropus vampyrus	23.90	9.00e-20	90.90
IUUC-Rno-105675	Rattus norvegicus	32.52	3.00e-16	79.30
IUUC-Sha-107389	Sarcophilus harrisii	29.45	2.00e-14	73.60
IUUC-Sja-107847	Schizosaccharomyces japonicus	22.51	3.00e-09	55.80
IUUC-Sit-110421	Setaria italica	35.83	4.00e-52	197.00
IUUC-Sly-110888	Solanum lycopersicum	38.68	2.00e-89	322.00
IUUC-Sbi-114182	Sorghum bicolor	34.71	7.00e-31	126.00
IUUC-Ssc-116005	Sus scrofa	23.69	2.00e-18	86.30
IUUC-Tgu-117023	Taeniopygia guttata	27.62	1.00e-12	67.00
IUUC-Tru-118221	Takifugu rubripes	31.64	2.00e-16	80.10
IUUC-Tsy-118784	Tarsius syrichta	28.81	4.00e-12	65.10
IUUC-Tni-120072	Tetraodon nigroviridis	31.06	3.00e-16	79.00
IUUC-Tca-121267	Theobroma cacao	44.86	2.00e-114	405.00
IUUC-Tae-124867	Triticum aestivum	34.91	4.00e-63	234.00
IUUC-Tur-126655	Triticum urartu	38.78	2.00e-43	168.00
IUUC-Tbe-127243	Tupaia belangeri	39.76	5.00e-10	58.50
IUUC-Ttr-129237	Tursiops truncatus	31.29	2.00e-15	76.60
IUUC-Vvi-131184	Vitis vinifera	45.08	6.00e-124	436.00
IUUC-Xtr-132006	Xenopus tropicalis	25.81	6.00e-14	71.20

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence