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Tag Content
UUCD2 ID IUUC-Xtr-132769
UUCD1 version UUC-XeT-00402
Ensembl Protein ID ENSXETP00000058490.1
UniProt Accession F6WST1; F6WST1_XENTR
Genbank Protein ID ENSXETP00000058490
Protein Name Uncharacterized protein
Genbank Nucleotide ID AAMC01091931
Gene Name snrnp40
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSXETG00000012910.3 ENSXETT00000028255.3 ENSXETP00000028255.3
ENSXETG00000012910.3 ENSXETT00000066007.1 ENSXETP00000058490.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.70e-41 137.9 149 183
UBD/Beta-Prp 3.70e-59 200.5 62 265
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
           gHt+ v+++     +  l+++GsdDgt+k+WD+r+
   Q: 149  GHTSFVNSCYParRGpQLICTGSDDGTVKLWDFRK 183
           8*******9659955599**************986 PP
   

   UBD/Beta-Prp
   S: 48   lsgheaevtavkfspdgkilvtgseDrtikvwdls.tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsg 135
           lsghe+ev+++kf+p+g +l +++ Dr+i +w++  +++   tlkgh+  v+ l+++ +g+ l s+s d+t+ +wd etg+ ++  l+g
   Q: 62   LSGHEGEVYCCKFHPNGVTLSSAGFDRLILLWNVYgDCDNYATLKGHSGAVMELHYNTDGSLLFSASTDKTVAIWDCETGERVK-RLKG 149
           8*******************************8765999*********************************************.**** PP
   S: 136  hdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtd 223
           h+++vn+      g +l+ +Gs+D+tv+lWd + +  ++t++  +t +v s++f++++ +++sg+ d+++k+wdl++++ ++t++gh d
   Q: 150  HTSFVNSCYPARRGpQLICTGSDDGTVKLWDFRKKAAVQTFQ--NTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLMYTMRGHGD 236
           *****************************************7..6******************************************** PP
   S: 224  nvksvrfspnderlvsgssDgsiriWdlr 252
            v+ + +s+++ +l+s ++D+++r+Wd+r
   Q: 237  SVTGLSLSSEGSYLLSNAMDNTVRVWDVR 265
           ***************************98 PP
   
Organism Xenopus tropicalis
Protein Sequence
(Fasta)
MIEQNKRKGM ELVPVQAKKP RNELVVSVMM APPTARMSAG SISLSRLGPP RSSSLQAPIM 60
LLSGHEGEVY CCKFHPNGVT LSSAGFDRLI LLWNVYGDCD NYATLKGHSG AVMELHYNTD 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Xtr-132769|E3,WD_repeat;UBD,Beta-Prp|Xenopus tropicalis
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGAACGCAAG CGAGTCTTAC AGTGTGGCTG GGTTTGTGAG TGTTAGACAA GCTGGAAGGA 60
GTTCTTGGAA ACATGATCGA GCAAAACAAG CGGAAGGGAA TGGAGTTGGT GCCGGTACAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Xtr-132769|E3,WD_repeat;UBD,Beta-Prp|Xenopus tropicalis
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR023302--Pept_S9A_N
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0071011--C:precatalytic spliceosome
GO:0005682--C:U5 snRNP
GO:0008380--P:RNA splicing
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000138 Aegilops tauschii 53.24 5.00e-114 404.00
IUUC-Aml-001428 Ailuropoda melanoleuca 85.13 7.00e-164 569.00
IUUC-Atr-003164 Amborella trichopoda 56.02 5.00e-117 413.00
IUUC-Apl-003447 Anas platyrhynchos 92.39 1.00e-153 534.00
IUUC-Aca-004270 Anolis carolinensis 78.24 5.00e-160 556.00
IUUC-Aly-005659 Arabidopsis lyrata 59.81 1.00e-117 416.00
IUUC-Ath-006764 Arabidopsis thaliana 59.81 9.00e-118 416.00
IUUC-Acl-008324 Aspergillus clavatus 47.10 4.00e-89 321.00
IUUC-Afl-008607 Aspergillus flavus 47.67 6.00e-85 306.00
IUUC-Afu-008998 Aspergillus fumigatus 46.77 6.00e-89 320.00
IUUC-Ani-009363 Aspergillus nidulans 46.77 2.00e-90 325.00
IUUC-Ang-009513 Aspergillus niger 46.23 2.00e-80 292.00
IUUC-Aor-010237 Aspergillus oryzae 48.39 4.00e-90 324.00
IUUC-Ate-010374 Aspergillus terreus 43.55 2.00e-77 281.00
IUUC-Ame-010728 Astyanax mexicanus 82.22 4.00e-170 590.00
IUUC-Bgr-012297 Blumeria graminis 45.82 3.00e-68 251.00
IUUC-Bta-012433 Bos taurus 85.56 1.00e-169 588.00
IUUC-Bci-013763 Botrytis cinerea 49.20 5.00e-91 327.00
IUUC-Bdi-014490 Brachypodium distachyon 53.55 3.00e-113 401.00
IUUC-Bol-016479 Brassica oleracea 58.90 4.00e-118 417.00
IUUC-Bra-017219 Brassica rapa 55.87 6.00e-118 417.00
IUUC-Cel-018512 Caenorhabditis elegans 55.19 2.00e-106 379.00
IUUC-Cja-019308 Callithrix jacchus 84.72 2.00e-171 594.00
IUUC-Cfa-020998 Canis familiaris 85.00 1.00e-171 595.00
IUUC-Cpo-021580 Cavia porcellus 85.56 7.00e-170 589.00
IUUC-Cre-022859 Chlamydomonas reinhardtii 53.80 3.00e-103 367.00
IUUC-Csa-023456 Chlorocebus sabaeus 85.52 9.00e-173 598.00
IUUC-Cho-024644 Choloepus hoffmanni 92.63 6.00e-168 582.00
IUUC-Cin-025463 Ciona intestinalis 55.74 8.00e-123 432.00
IUUC-Cgl-026497 Colletotrichum gloeosporioides 47.59 3.00e-92 331.00
IUUC-Cne-026780 Cryptococcus neoformans 38.59 2.00e-65 242.00
IUUC-Dre-027671 Danio rerio 81.94 5.00e-177 613.00
IUUC-Dno-029769 Dasypus novemcinctus 85.56 1.00e-173 602.00
IUUC-Dor-030776 Dipodomys ordii 78.65 2.00e-76 278.00
IUUC-Dse-031316 Dothistroma septosporum 43.00 1.00e-82 299.00
IUUC-Dme-031756 Drosophila melanogaster 56.20 2.00e-119 421.00
IUUC-Ete-032753 Echinops telfairi 78.55 3.00e-147 514.00
IUUC-Eca-033979 Equus caballus 85.56 1.00e-169 588.00
IUUC-Eeu-034862 Erinaceus europaeus 91.49 4.00e-65 241.00
IUUC-Fca-036110 Felis catus 85.39 3.00e-145 507.00
IUUC-Fal-037648 Ficedula albicollis 92.31 5.00e-167 580.00
IUUC-Fox-037861 Fusarium oxysporum 45.02 2.00e-89 322.00
IUUC-Fso-038405 Fusarium solani 45.02 4.00e-89 321.00
IUUC-Gmo-039383 Gadus morhua 81.39 4.00e-170 590.00
IUUC-Ggr-040082 Gaeumannomyces graminis 40.96 5.00e-79 287.00
IUUC-Gga-040785 Gallus gallus 84.86 4.00e-169 587.00
IUUC-Gac-041645 Gasterosteus aculeatus 81.39 4.00e-168 583.00
IUUC-Gma-044329 Glycine max 57.88 8.00e-115 406.00
IUUC-Ggo-044800 Gorilla gorilla 76.16 1.00e-139 489.00
IUUC-Hsa-045918 Homo sapiens 85.52 9.00e-173 598.00
IUUC-Hvu-047342 Hordeum vulgare 53.24 1.00e-113 402.00
IUUC-Itr-048047 Ictidomys tridecemlineatus 81.28 2.00e-100 357.00
IUUC-Kpa-049149 Komagataella pastoris 33.12 3.00e-34 138.00
IUUC-Lch-050395 Latimeria chalumnae 83.33 0.00e+00 626.00
IUUC-Lpe-051275 Leersia perrieri 53.85 5.00e-114 404.00
IUUC-Loc-052666 Lepisosteus oculatus 84.34 1.00e-169 588.00
IUUC-Lma-053129 Leptosphaeria maculans 42.90 1.00e-81 296.00
IUUC-Laf-054512 Loxodonta africana 84.68 2.00e-169 588.00
IUUC-Mcc-055819 Macaca mulatta 85.52 1.00e-172 598.00
IUUC-Meu-056350 Macropus eugenii 75.21 2.00e-144 504.00
IUUC-Mor-057063 Magnaporthe oryzae 44.16 3.00e-88 318.00
IUUC-Mpo-057369 Magnaporthe poae 42.37 6.00e-80 290.00
IUUC-Mtr-058228 Medicago truncatula 53.03 3.00e-114 404.00
IUUC-Mla-059093 Melampsora laricipopulina 42.37 5.00e-66 244.00
IUUC-Mga-059719 Meleagris gallopavo 92.95 3.00e-168 583.00
IUUC-Mvi-060285 Microbotryum violaceum 39.45 2.00e-61 229.00
IUUC-Mmr-061685 Microcebus murinus 79.17 1.00e-152 531.00
IUUC-Mdo-062121 Monodelphis domestica 84.02 4.00e-169 587.00
IUUC-Mmu-063216 Mus musculus 85.83 2.00e-173 601.00
IUUC-Mac-065463 Musa acuminata 54.34 2.00e-103 368.00
IUUC-Mpu-066390 Mustela putorius furo 85.28 1.00e-172 598.00
IUUC-Mlu-066932 Myotis lucifugus 84.30 2.00e-161 561.00
IUUC-Nfi-068509 Neosartorya fischeri 47.10 4.00e-89 321.00
IUUC-Ncr-068870 Neurospora crassa 46.95 4.00e-90 324.00
IUUC-Nle-069539 Nomascus leucogenys 85.52 1.00e-172 598.00
IUUC-Opr-070555 Ochotona princeps 75.00 2.00e-149 521.00
IUUC-Ont-071490 Oreochromis niloticus 80.89 3.00e-167 580.00
IUUC-Oan-073044 Ornithorhynchus anatinus 73.22 1.00e-140 491.00
IUUC-Ocu-073764 Oryctolagus cuniculus 85.00 5.00e-173 600.00
IUUC-Oba-075704 Oryza barthii 56.59 2.00e-113 401.00
IUUC-Obr-076455 Oryza brachyantha 54.14 1.00e-113 403.00
IUUC-Ogl-077382 Oryza glaberrima 53.85 8.00e-114 403.00
IUUC-Ogu-078739 Oryza glumaepatula 56.59 2.00e-113 402.00
IUUC-Oin-079072 Oryza indica 56.59 2.00e-113 402.00
IUUC-Olo-080809 Oryza longistaminata 56.59 2.00e-113 402.00
IUUC-Ome-081677 Oryza meridionalis 56.59 5.00e-113 400.00
IUUC-Oni-082937 Oryza nivara 56.59 2.00e-113 402.00
IUUC-Opu-083510 Oryza punctata 56.59 2.00e-113 402.00
IUUC-Oru-084360 Oryza rufipogon 53.55 1.00e-113 402.00
IUUC-Osa-085640 Oryza sativa 53.55 2.00e-113 402.00
IUUC-Ola-086504 Oryzias latipes 80.56 2.00e-167 581.00
IUUC-Olu-087869 Ostreococcus lucimarinus 40.07 1.00e-60 226.00
IUUC-Oga-088773 Otolemur garnettii 84.72 5.00e-171 593.00
IUUC-Oar-089677 Ovis aries 84.85 4.00e-168 583.00
IUUC-Ptr-090724 Pan troglodytes 85.17 4.00e-164 570.00
IUUC-Pan-092683 Papio anubis 85.52 9.00e-173 598.00
IUUC-Psi-093415 Pelodiscus sinensis 93.20 2.00e-166 578.00
IUUC-Pma-094562 Petromyzon marinus 74.44 6.00e-162 563.00
IUUC-Pno-095014 Phaeosphaeria nodorum 47.14 3.00e-84 305.00
IUUC-Ppa-095728 Physcomitrella patens 55.49 2.00e-115 408.00
IUUC-Pfo-096579 Poecilia formosa 80.56 7.00e-166 576.00
IUUC-Pab-098313 Pongo abelii 85.52 9.00e-173 598.00
IUUC-Pop-099747 Populus trichocarpa 57.50 2.00e-116 411.00
IUUC-Pca-100871 Procavia capensis 79.08 1.00e-120 425.00
IUUC-Ppe-101389 Prunus persica 60.45 3.00e-119 421.00
IUUC-Pva-102468 Pteropus vampyrus 71.67 8.00e-131 459.00
IUUC-Pgr-103523 Puccinia graminis 42.06 4.00e-72 264.00
IUUC-Ptt-103930 Puccinia triticina 42.06 7.00e-72 264.00
IUUC-Pte-104299 Pyrenophora teres 46.45 7.00e-88 317.00
IUUC-Pyt-104564 Pyrenophora triticirepentis 47.25 4.00e-88 318.00
IUUC-Rno-105796 Rattus norvegicus 85.28 1.00e-172 598.00
IUUC-Sha-107191 Sarcophilus harrisii 83.75 4.00e-169 587.00
IUUC-Sja-107952 Schizosaccharomyces japonicus 37.34 1.00e-59 223.00
IUUC-Spo-108249 Schizosaccharomyces pombe 42.21 1.00e-75 276.00
IUUC-Ssl-108448 Sclerotinia sclerotiorum 48.23 4.00e-90 324.00
IUUC-Sit-110805 Setaria italica 52.66 1.00e-112 399.00
IUUC-Sly-111567 Solanum lycopersicum 58.93 3.00e-118 417.00
IUUC-Stu-112562 Solanum tuberosum 56.89 2.00e-120 425.00
IUUC-Sar-112991 Sorex araneus 92.31 4.00e-114 403.00
IUUC-Sbi-114010 Sorghum bicolor 55.63 2.00e-112 398.00
IUUC-Sre-114947 Sporisorium reilianum 42.11 2.00e-72 265.00
IUUC-Ssc-115371 Sus scrofa 85.56 1.00e-169 588.00
IUUC-Tgu-117429 Taeniopygia guttata 89.64 1.00e-164 572.00
IUUC-Tru-118081 Takifugu rubripes 81.27 3.00e-167 580.00
IUUC-Tsy-119101 Tarsius syrichta 73.89 1.00e-141 495.00
IUUC-Tni-120532 Tetraodon nigroviridis 81.11 6.00e-167 579.00
IUUC-Tca-121373 Theobroma cacao 59.11 3.00e-118 417.00
IUUC-Tre-122050 Trichoderma reesei 44.69 2.00e-88 318.00
IUUC-Tvi-122394 Trichoderma virens 44.52 5.00e-83 300.00
IUUC-Tae-124661 Triticum aestivum 53.37 4.00e-113 400.00
IUUC-Tme-126998 Tuber melanosporum 47.91 4.00e-91 327.00
IUUC-Tbe-128032 Tupaia belangeri 85.00 1.00e-171 595.00
IUUC-Ttr-129102 Tursiops truncatus 77.22 2.00e-145 508.00
IUUC-Uma-129363 Ustilago maydis 42.72 5.00e-76 277.00
IUUC-Vda-129891 Verticillium dahliae 48.55 1.00e-90 326.00
IUUC-Vpa-130827 Vicugna pacos 85.00 1.00e-168 585.00
IUUC-Vvi-131202 Vitis vinifera 54.84 1.00e-116 412.00
IUUC-Xma-133147 Xiphophorus maculatus 80.83 5.00e-166 576.00
IUUC-Yli-134352 Yarrowia lipolytica 33.89 7.00e-34 137.00
IUUC-Zma-135294 Zea mays 55.63 4.00e-112 397.00
Created Date 25-Jun-2017

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