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Tag Content
iUUCD ID IUUC-Stu-112906
Ensembl Protein ID PGSC0003DMT400073669
UniProt Accession M1CSF4; M1CSF4_SOLTU
Protein Name Coatomer subunit beta'
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
PGSC0003DMG400028615 PGSC0003DMT400073667 PGSC0003DMT400073667
PGSC0003DMG400028615 PGSC0003DMT400073668 PGSC0003DMT400073668
PGSC0003DMG400028615 PGSC0003DMT400073669 PGSC0003DMT400073669
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.00e-32 112.0 136 176
UBD/Beta-Prp 1.40e-58 199.7 4 240
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           H  +v+c+++    d ++l++GsdD+t kvWD+ t  ++++
   Q: 136  HLKGVNCVDYftgGDkPYLITGSDDHTAKVWDYQTKSCVQT 176
           8889****966*9778*******************999986 PP
   

   UBD/Beta-Prp
   S: 47   slsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsg 135
           s++  e +v++ kf+p++++ v g++D++i+v++++t + v ++++h+d++++++++p+  +++s s+d  i++wd+e+g+   ++++g
   Q: 4    SFEVTELPVRSAKFIPRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWLCTQIFEG 92
           67778899*************************************************************************9999**** PP
   S: 136  hdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklwdlqtgecvrtlngh 221
           h++ v+ v+++p++ n ++s+slDrt+++W+l + +   tl   h + v++++     ++++l++gs+d t k+wd+qt++cv+tl+gh
   Q: 93   HSHYVMQVTFNPKDtNTFASASLDRTIKIWNLGSPDPNFTLDA-HLKGVNCVDyfTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH 180
           *****************************************98.*********6444555***************************** PP
   S: 222  tdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlv 281
           t nv+ v f+p+  ++++gs+Dg++riW +++  l +tl++  ++v+++ +++ +++v++
   Q: 181  THNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYMRSSRRVVI 240
           *************************************************99777777664 PP
   
Organism Solanum tuberosum
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Protein Sequence
(Fasta)
MAKSFEVTEL PVRSAKFIPR KQWVVAGADD MFIRVYNYNT MDKVKVFEAH TDYIRCVAVH 60
PTLPYVLSSS DDMLIKLWDW EKGWLCTQIF EGHSHYVMQV TFNPKDTNTF ASASLDRTIK 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Stu-112906|E3,WD_repeat;UBD,Beta-Prp|Solanum tuberosum
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AGAGAAAACT TGCTCAAAGA TCGGAAAGGG TAAAGTCAGT GGATCTACAT CCTTCCGAGC 60
CATGGTAATT GAACTTCCAT TTTATGAAAT TAGATCAATT TGTTTTCTGA TGCAATATCC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Stu-112906|E3,WD_repeat;UBD,Beta-Prp|Solanum tuberosum
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000654 Aegilops tauschii 75.72 0.00e+00 1326.00
IUUC-Aml-002154 Ailuropoda melanoleuca 60.94 0.00e+00 1025.00
IUUC-Atr-003090 Amborella trichopoda 76.78 0.00e+00 1392.00
IUUC-Apl-003976 Anas platyrhynchos 60.81 0.00e+00 1028.00
IUUC-Aca-004301 Anolis carolinensis 60.05 0.00e+00 1027.00
IUUC-Aly-006508 Arabidopsis lyrata 82.92 0.00e+00 1485.00
IUUC-Ath-007635 Arabidopsis thaliana 82.81 0.00e+00 1480.00
IUUC-Ago-007914 Ashbya gossypii 46.28 0.00e+00 652.00
IUUC-Acl-008237 Aspergillus clavatus 53.32 0.00e+00 836.00
IUUC-Afl-008535 Aspergillus flavus 53.80 0.00e+00 838.00
IUUC-Afu-008845 Aspergillus fumigatus 52.61 0.00e+00 822.00
IUUC-Ani-009135 Aspergillus nidulans 54.68 0.00e+00 813.00
IUUC-Ang-009654 Aspergillus niger 56.14 0.00e+00 750.00
IUUC-Aor-009939 Aspergillus oryzae 51.72 0.00e+00 841.00
IUUC-Ate-010355 Aspergillus terreus 52.74 0.00e+00 802.00
IUUC-Ame-010922 Astyanax mexicanus 54.72 0.00e+00 885.00
IUUC-Bgr-012249 Blumeria graminis 52.70 0.00e+00 823.00
IUUC-Bta-013579 Bos taurus 62.21 0.00e+00 932.00
IUUC-Bci-013866 Botrytis cinerea 53.95 0.00e+00 821.00
IUUC-Bdi-014102 Brachypodium distachyon 80.41 0.00e+00 1466.00
IUUC-Bol-016271 Brassica oleracea 82.20 0.00e+00 1476.00
IUUC-Bra-017758 Brassica rapa 81.86 0.00e+00 1473.00
IUUC-Cel-018387 Caenorhabditis elegans 53.32 0.00e+00 892.00
IUUC-Cja-019145 Callithrix jacchus 61.06 0.00e+00 1026.00
IUUC-Cfa-020564 Canis familiaris 60.94 0.00e+00 1025.00
IUUC-Cpo-022201 Cavia porcellus 60.94 0.00e+00 1025.00
IUUC-Cre-022938 Chlamydomonas reinhardtii 65.81 0.00e+00 1034.00
IUUC-Csa-023383 Chlorocebus sabaeus 65.13 0.00e+00 750.00
IUUC-Cho-024454 Choloepus hoffmanni 57.97 0.00e+00 836.00
IUUC-Cin-025681 Ciona intestinalis 58.91 0.00e+00 920.00
IUUC-Csv-026012 Ciona savignyi 57.62 0.00e+00 892.00
IUUC-Cgl-026649 Colletotrichum gloeosporioides 49.01 0.00e+00 732.00
IUUC-Cne-026986 Cryptococcus neoformans 49.36 0.00e+00 808.00
IUUC-Cme-027219 Cyanidioschyzon merolae 51.99 0.00e+00 826.00
IUUC-Dre-027846 Danio rerio 60.75 0.00e+00 1032.00
IUUC-Dor-030462 Dipodomys ordii 58.97 0.00e+00 778.00
IUUC-Dse-031268 Dothistroma septosporum 52.68 0.00e+00 819.00
IUUC-Dme-031791 Drosophila melanogaster 56.31 0.00e+00 941.00
IUUC-Ete-033166 Echinops telfairi 57.23 2.00e-178 618.00
IUUC-Eca-034180 Equus caballus 60.23 0.00e+00 991.00
IUUC-Eeu-035086 Erinaceus europaeus 49.09 3.00e-126 444.00
IUUC-Fca-036265 Felis catus 60.94 0.00e+00 1025.00
IUUC-Fal-037202 Ficedula albicollis 61.06 0.00e+00 1032.00
IUUC-Fox-037711 Fusarium oxysporum 53.82 0.00e+00 782.00
IUUC-Fso-038268 Fusarium solani 53.16 0.00e+00 791.00
IUUC-Gmo-039046 Gadus morhua 60.35 0.00e+00 1018.00
IUUC-Ggr-039863 Gaeumannomyces graminis 52.44 0.00e+00 801.00
IUUC-Gga-041112 Gallus gallus 61.19 0.00e+00 1032.00
IUUC-Gac-041733 Gasterosteus aculeatus 60.46 0.00e+00 984.00
IUUC-Gma-044126 Glycine max 85.62 0.00e+00 1534.00
IUUC-Ggo-044984 Gorilla gorilla 61.06 0.00e+00 1026.00
IUUC-Hsa-046698 Homo sapiens 60.94 0.00e+00 1026.00
IUUC-Hvu-047669 Hordeum vulgare 90.88 2.00e-175 606.00
IUUC-Itr-048212 Ictidomys tridecemlineatus 60.94 0.00e+00 1024.00
IUUC-Kpa-049265 Komagataella pastoris 50.07 0.00e+00 766.00
IUUC-Lch-050473 Latimeria chalumnae 61.80 0.00e+00 1023.00
IUUC-Lpe-051579 Leersia perrieri 80.50 0.00e+00 1441.00
IUUC-Loc-052675 Lepisosteus oculatus 61.49 0.00e+00 1030.00
IUUC-Lma-053218 Leptosphaeria maculans 52.20 0.00e+00 799.00
IUUC-Laf-053757 Loxodonta africana 60.91 0.00e+00 1022.00
IUUC-Mcc-054859 Macaca mulatta 61.06 0.00e+00 1026.00
IUUC-Meu-056174 Macropus eugenii 52.97 6.00e-110 390.00
IUUC-Mor-057264 Magnaporthe oryzae 52.83 0.00e+00 792.00
IUUC-Mpo-057538 Magnaporthe poae 52.31 0.00e+00 806.00
IUUC-Mtr-058618 Medicago truncatula 85.49 0.00e+00 1500.00
IUUC-Mla-058937 Melampsora laricipopulina 52.51 0.00e+00 818.00
IUUC-Mga-059875 Meleagris gallopavo 61.03 0.00e+00 1028.00
IUUC-Mvi-060240 Microbotryum violaceum 49.82 0.00e+00 837.00
IUUC-Mmr-061261 Microcebus murinus 60.94 0.00e+00 1025.00
IUUC-Mdo-062076 Monodelphis domestica 61.83 0.00e+00 1030.00
IUUC-Mmu-063324 Mus musculus 60.94 0.00e+00 1026.00
IUUC-Mac-065544 Musa acuminata 80.70 0.00e+00 1467.00
IUUC-Mpu-065961 Mustela putorius furo 60.94 0.00e+00 1023.00
IUUC-Mlu-067059 Myotis lucifugus 60.05 0.00e+00 1008.00
IUUC-Nfi-068277 Neosartorya fischeri 52.87 0.00e+00 822.00
IUUC-Ncr-068659 Neurospora crassa 52.23 0.00e+00 816.00
IUUC-Nle-069034 Nomascus leucogenys 61.06 0.00e+00 1026.00
IUUC-Opr-070334 Ochotona princeps 62.46 0.00e+00 919.00
IUUC-Ont-071563 Oreochromis niloticus 60.61 0.00e+00 1025.00
IUUC-Oan-073416 Ornithorhynchus anatinus 62.77 0.00e+00 1018.00
IUUC-Ocu-074522 Oryctolagus cuniculus 60.35 0.00e+00 1021.00
IUUC-Oba-075760 Oryza barthii 81.34 0.00e+00 1450.00
IUUC-Obr-076163 Oryza brachyantha 80.96 0.00e+00 1439.00
IUUC-Ogl-077450 Oryza glaberrima 80.97 0.00e+00 1446.00
IUUC-Ogu-078994 Oryza glumaepatula 81.34 0.00e+00 1449.00
IUUC-Oin-079211 Oryza indica 85.15 0.00e+00 1441.00
IUUC-Olo-080731 Oryza longistaminata 81.31 0.00e+00 1453.00
IUUC-Ome-081762 Oryza meridionalis 79.37 0.00e+00 1352.00
IUUC-Oni-082324 Oryza nivara 81.34 0.00e+00 1450.00
IUUC-Opu-083433 Oryza punctata 85.02 0.00e+00 1441.00
IUUC-Oru-084829 Oryza rufipogon 81.20 0.00e+00 1453.00
IUUC-Osa-086026 Oryza sativa 85.15 0.00e+00 1442.00
IUUC-Ola-087245 Oryzias latipes 60.48 0.00e+00 1023.00
IUUC-Olu-087655 Ostreococcus lucimarinus 67.11 0.00e+00 1065.00
IUUC-Oga-088163 Otolemur garnettii 58.46 0.00e+00 969.00
IUUC-Oar-089842 Ovis aries 60.81 0.00e+00 1025.00
IUUC-Ptr-090501 Pan troglodytes 61.06 0.00e+00 1026.00
IUUC-Pan-092011 Papio anubis 61.06 0.00e+00 1026.00
IUUC-Psi-093308 Pelodiscus sinensis 61.31 0.00e+00 1031.00
IUUC-Pma-094695 Petromyzon marinus 56.78 0.00e+00 901.00
IUUC-Pno-094785 Phaeosphaeria nodorum 58.42 6.00e-103 367.00
IUUC-Ppa-095911 Physcomitrella patens 75.29 0.00e+00 1324.00
IUUC-Pfo-096587 Poecilia formosa 60.35 0.00e+00 1025.00
IUUC-Pab-097926 Pongo abelii 60.28 0.00e+00 954.00
IUUC-Pop-099634 Populus trichocarpa 84.95 0.00e+00 1496.00
IUUC-Pca-100965 Procavia capensis 59.95 0.00e+00 992.00
IUUC-Ppe-101470 Prunus persica 86.28 0.00e+00 1544.00
IUUC-Pva-102451 Pteropus vampyrus 57.84 0.00e+00 765.00
IUUC-Pgr-103453 Puccinia graminis 52.13 0.00e+00 826.00
IUUC-Ptt-103868 Puccinia triticina 52.07 0.00e+00 825.00
IUUC-Pte-104274 Pyrenophora teres 53.14 0.00e+00 816.00
IUUC-Pyt-104794 Pyrenophora triticirepentis 53.00 0.00e+00 816.00
IUUC-Rno-105979 Rattus norvegicus 53.18 0.00e+00 743.00
IUUC-Sce-106269 Saccharomyces cerevisiae 47.18 0.00e+00 684.00
IUUC-Sha-106905 Sarcophilus harrisii 61.06 0.00e+00 1030.00
IUUC-Sja-107838 Schizosaccharomyces japonicus 46.03 0.00e+00 699.00
IUUC-Spo-108299 Schizosaccharomyces pombe 45.11 0.00e+00 714.00
IUUC-Smo-108695 Selaginella moellendorffii 81.27 0.00e+00 1329.00
IUUC-Sit-110340 Setaria italica 84.36 0.00e+00 1457.00
IUUC-Sly-111211 Solanum lycopersicum 98.97 0.00e+00 1635.00
IUUC-Sar-113472 Sorex araneus 57.84 0.00e+00 761.00
IUUC-Sbi-113801 Sorghum bicolor 80.78 0.00e+00 1430.00
IUUC-Sre-115040 Sporisorium reilianum 51.39 0.00e+00 819.00
IUUC-Ssc-115593 Sus scrofa 60.81 0.00e+00 1023.00
IUUC-Tgu-117239 Taeniopygia guttata 61.06 0.00e+00 1031.00
IUUC-Tru-118025 Takifugu rubripes 61.03 0.00e+00 1021.00
IUUC-Tsy-118824 Tarsius syrichta 57.22 0.00e+00 703.00
IUUC-Tni-120142 Tetraodon nigroviridis 61.10 0.00e+00 1019.00
IUUC-Tca-121613 Theobroma cacao 86.62 0.00e+00 1573.00
IUUC-Tre-122072 Trichoderma reesei 52.44 0.00e+00 815.00
IUUC-Tvi-122546 Trichoderma virens 51.91 0.00e+00 792.00
IUUC-Tae-125395 Triticum aestivum 80.48 0.00e+00 1460.00
IUUC-Tur-126283 Triticum urartu 74.63 0.00e+00 1320.00
IUUC-Tme-127041 Tuber melanosporum 53.09 0.00e+00 831.00
IUUC-Tbe-127770 Tupaia belangeri 59.87 0.00e+00 807.00
IUUC-Ttr-129294 Tursiops truncatus 60.68 0.00e+00 1021.00
IUUC-Uma-129351 Ustilago maydis 50.26 0.00e+00 811.00
IUUC-Vda-129716 Verticillium dahliae 53.82 0.00e+00 832.00
IUUC-Vpa-130037 Vicugna pacos 50.84 7.00e-130 457.00
IUUC-Vvi-131689 Vitis vinifera 89.05 0.00e+00 1504.00
IUUC-Xtr-132633 Xenopus tropicalis 60.13 0.00e+00 1021.00
IUUC-Xma-133347 Xiphophorus maculatus 60.61 0.00e+00 1026.00
IUUC-Yli-134455 Yarrowia lipolytica 50.13 0.00e+00 727.00
IUUC-Zma-135706 Zea mays 81.83 0.00e+00 1459.00
Created Date 25-Jun-2017

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