iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSMUSG00000106864.3	ENSMUST00000088010.11	ENSMUSP00000085325.5
ENSMUSG00000106864.3	ENSMUST00000202639.3	ENSMUSP00000144489.1
ENSMUSG00000106864.3	ENSMUST00000200871.1	ENSMUSP00000144427.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	GXD
DNA & RNA Element
miRTarBase	microRNA	TRANSFAC	RepTar
RAID2
Protein-protein Interaction
HINT
Post-translational Modifications (PTMs)
CPLM	dbPAF	PHOSIDA	mUbiSiDa
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.20e-11	42.7	651	683

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlr 31
           H   v+ +++   ++++lvs++ D +ik WDlr
   Q: 651  HDQAVRTIQWckaNSHFLVSAGSDRKIKFWDLR 683
           8999********8669***************97 PP

Organism

Mus musculus

Protein Sequence
(Fasta)

MDTCGVGYVA LGEADPVGSM IVVDSPGQEE LSQLDVKASE TSGVEASIEM SLPPPLPGFE 60
DSSDRRLPPD QESLTRLEQQ DLSSEMSKVS NTRASKPSGR RGGRTARGAK RPQQRKPPST 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGAAGGCCCT GCAGTGTCCT AGGGCCGCGG AAGCCACGCT CCAGCTCGCG GGCGTCGGAG 60
GGCTCAGTGC CGCGCCGCGC TGCATTATGG AACACAGAGT TTAAAAGAAA GCTCGGCAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000091	Aegilops tauschii	30.15	6.00e-11	63.50
IUUC-Apl-003185	Anas platyrhynchos	60.87	0.00e+00	753.00
IUUC-Aca-005245	Anolis carolinensis	59.55	0.00e+00	719.00
IUUC-Ath-006785	Arabidopsis thaliana	22.96	6.00e-06	46.60
IUUC-Ame-010654	Astyanax mexicanus	42.62	2.00e-143	503.00
IUUC-Bta-012551	Bos taurus	78.95	0.00e+00	1295.00
IUUC-Bdi-014228	Brachypodium distachyon	21.76	7.00e-13	70.10
IUUC-Bol-015619	Brassica oleracea	26.86	3.00e-06	47.80
IUUC-Bra-017820	Brassica rapa	25.79	1.00e-06	48.50
IUUC-Cja-019727	Callithrix jacchus	81.68	0.00e+00	1367.00
IUUC-Cpo-021854	Cavia porcellus	84.49	0.00e+00	1469.00
IUUC-Csa-023726	Chlorocebus sabaeus	81.78	0.00e+00	1363.00
IUUC-Cho-024296	Choloepus hoffmanni	90.13	0.00e+00	717.00
IUUC-Dre-028735	Danio rerio	42.79	2.00e-150	526.00
IUUC-Dno-028895	Dasypus novemcinctus	80.69	0.00e+00	1306.00
IUUC-Dor-030617	Dipodomys ordii	93.13	0.00e+00	1178.00
IUUC-Eeu-035060	Erinaceus europaeus	71.06	0.00e+00	1158.00
IUUC-Fca-035603	Felis catus	80.50	0.00e+00	1346.00
IUUC-Fal-037637	Ficedula albicollis	62.48	0.00e+00	803.00
IUUC-Gga-040991	Gallus gallus	63.50	0.00e+00	784.00
IUUC-Hsa-046196	Homo sapiens	81.99	0.00e+00	1382.00
IUUC-Hvu-047758	Hordeum vulgare	25.75	8.00e-11	63.50
IUUC-Itr-048222	Ictidomys tridecemlineatus	85.77	0.00e+00	1442.00
IUUC-Lpe-050995	Leersia perrieri	22.16	1.00e-12	69.30
IUUC-Loc-052778	Lepisosteus oculatus	53.32	0.00e+00	706.00
IUUC-Mcc-055795	Macaca mulatta	90.14	0.00e+00	1221.00
IUUC-Mdo-063012	Monodelphis domestica	77.40	0.00e+00	1017.00
IUUC-Nle-069278	Nomascus leucogenys	81.78	0.00e+00	1365.00
IUUC-Opr-070222	Ochotona princeps	91.37	0.00e+00	1141.00
IUUC-Ont-071367	Oreochromis niloticus	38.88	4.00e-128	452.00
IUUC-Oan-073357	Ornithorhynchus anatinus	78.29	0.00e+00	732.00
IUUC-Ocu-074887	Oryctolagus cuniculus	80.10	0.00e+00	1272.00
IUUC-Obr-076376	Oryza brachyantha	23.78	2.00e-12	67.80
IUUC-Ogl-077258	Oryza glaberrima	29.73	6.00e-10	60.10
IUUC-Ogu-078002	Oryza glumaepatula	29.73	6.00e-10	59.70
IUUC-Oin-079689	Oryza indica	29.73	7.00e-10	60.10
IUUC-Olo-080486	Oryza longistaminata	31.87	1.00e-07	52.00
IUUC-Oni-082369	Oryza nivara	29.73	8.00e-10	60.10
IUUC-Opu-083230	Oryza punctata	20.73	7.00e-11	63.50
IUUC-Osa-085403	Oryza sativa	29.73	6.00e-10	60.10
IUUC-Ola-087512	Oryzias latipes	40.06	3.00e-72	265.00
IUUC-Oga-088051	Otolemur garnettii	78.85	0.00e+00	1265.00
IUUC-Oar-090076	Ovis aries	78.74	0.00e+00	1313.00
IUUC-Pan-092123	Papio anubis	81.88	0.00e+00	1364.00
IUUC-Psi-094020	Pelodiscus sinensis	66.29	0.00e+00	847.00
IUUC-Pma-094395	Petromyzon marinus	43.79	6.00e-83	300.00
IUUC-Ppa-095644	Physcomitrella patens	26.85	1.00e-10	61.20
IUUC-Pfo-097023	Poecilia formosa	39.47	5.00e-126	445.00
IUUC-Pab-097532	Pongo abelii	81.78	0.00e+00	1377.00
IUUC-Pop-099342	Populus trichocarpa	20.32	2.00e-08	54.70
IUUC-Pca-100255	Procavia capensis	90.10	0.00e+00	728.00
IUUC-Ppe-101268	Prunus persica	27.83	1.00e-07	52.80
IUUC-Rno-105329	Rattus norvegicus	96.53	0.00e+00	1651.00
IUUC-Sha-106857	Sarcophilus harrisii	79.75	0.00e+00	1010.00
IUUC-Sit-110532	Setaria italica	30.71	1.00e-11	66.20
IUUC-Sbi-114680	Sorghum bicolor	32.28	2.00e-12	68.90
IUUC-Tgu-117058	Taeniopygia guttata	68.73	4.00e-143	500.00
IUUC-Tru-118675	Takifugu rubripes	41.26	4.00e-139	488.00
IUUC-Tni-120125	Tetraodon nigroviridis	40.27	2.00e-82	298.00
IUUC-Tae-125287	Triticum aestivum	22.49	2.00e-13	71.60
IUUC-Tur-126862	Triticum urartu	23.24	9.00e-13	69.70
IUUC-Tbe-127727	Tupaia belangeri	76.06	0.00e+00	1109.00
IUUC-Vvi-131706	Vitis vinifera	26.96	2.00e-08	55.10
IUUC-Xtr-132178	Xenopus tropicalis	46.68	0.00e+00	670.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence