iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cgl-026391

Ensembl Protein ID

ELA34558

UniProt Accession

L2G960; L2G960_COLGN

Genbank Protein ID

ELA34558.1

Protein Name

Polyadenylation factor subunit 2

Genbank Nucleotide ID

KB020610

Gene Name

CGGC5_5625

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CGGC5_5625	ELA34558	ELA34558

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-31	106.7	184	214
UBD/Beta-Prp	1.70e-47	161.6	54	292

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 8    claf.sd.tllvsGsdDgtikvWDlrtgvll 36
           ++++ ++ +llvsGs D+++k+WD+rtg++l
   Q: 184  SCDWhPTkGLLVSGSKDHVVKLWDPRTGRCL 214
           799**889*********************97 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklv 110
           k++i++v ++p+++ l+t+s +g  ++w+ t  ++   ++ h+++++a+ +s+++++l+++  D+ +k w ++ +  ++++ +h+d +++l+fsp+++k+v
   Q: 54   KHPINVVRWTPEGRRLLTASSSGEFTLWNGTGFNFETIMQAHDSAIRALAYSHNDDWLISADHDGSVKYWQPN-FNNLQSIAAHNDPIRDLAFSPNDSKFV 153
           68999******************************9999*******************************985.667888888****************** PP
   S: 111  sGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng.kelvsgsldgtvklwdlq 210
           ++ +d+t++++d   g + + +l+gh     +  +hp++ llvsGs+D +v+lWd +tg++l+tl g h++ ++++ f++ +  +l++ ++d+t +++dl+
   Q: 154  TACDDSTLKIFDFAGGVEES-VLKGHGWDAKSCDWHPTKGLLVSGSKDHVVKLWDPRTGRCLTTLHG-HKNTITKTLFERVQgDCLATSARDQTARVFDLR 252
           *******************9.*********************************************9.***********987699999************* PP
   S: 211  tgecvrtlnghtdnvksvrfs.pnderlvsgssDgsiriW 249
             + +  l+gh++ ++ ++ +  ++++l +g++Dgs++ +
   Q: 253  MMRDICLLKGHEKDISTIAWHpVHSNFLSTGGHDGSLYHY 292
           9999999**************779999999******9887 PP

Organism

Colletotrichum gloeosporioides

Protein Sequence
(Fasta)

MRNRAPADGD VYTGEAERPS ASFIVDFTPP SARRTDPGDS IPVKHLHSSL NKIKHPINVV 60
RWTPEGRRLL TASSSGEFTL WNGTGFNFET IMQAHDSAIR ALAYSHNDDW LISADHDGSV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCGCAATC GCGCGCCGGC AGACGGAGAT GTCTACACTG GCGAGGCTGA GAGGCCAAGT 60
GCGAGTTTCA TCGTCGATGT CAGTATTGCA TCTCTCATAA CTTCATAAGC CTGCTAACAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0000790--C:nuclear chromatin
GO:0031124--P:mRNA 3'-end processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001064	Aegilops tauschii	41.32	9.00e-89	319.00
IUUC-Aml-001363	Ailuropoda melanoleuca	46.85	5.00e-100	357.00
IUUC-Atr-003030	Amborella trichopoda	44.89	3.00e-94	337.00
IUUC-Apl-003409	Anas platyrhynchos	46.59	4.00e-98	351.00
IUUC-Aca-004694	Anolis carolinensis	46.85	2.00e-99	356.00
IUUC-Aly-006063	Arabidopsis lyrata	46.02	6.00e-96	343.00
IUUC-Ath-006583	Arabidopsis thaliana	45.74	2.00e-96	345.00
IUUC-Ago-007805	Ashbya gossypii	46.13	8.00e-96	342.00
IUUC-Acl-008075	Aspergillus clavatus	65.40	3.00e-158	550.00
IUUC-Afl-008582	Aspergillus flavus	65.33	2.00e-158	550.00
IUUC-Afu-008817	Aspergillus fumigatus	64.87	7.00e-144	501.00
IUUC-Ani-009391	Aspergillus nidulans	64.10	2.00e-149	520.00
IUUC-Ang-009750	Aspergillus niger	63.61	1.00e-112	397.00
IUUC-Aor-010085	Aspergillus oryzae	65.57	4.00e-159	553.00
IUUC-Ate-010397	Aspergillus terreus	64.69	2.00e-159	553.00
IUUC-Ame-010741	Astyanax mexicanus	55.39	9.00e-67	247.00
IUUC-Bgr-012169	Blumeria graminis	76.25	4.00e-173	599.00
IUUC-Bta-013265	Bos taurus	46.85	1.00e-99	357.00
IUUC-Bci-013762	Botrytis cinerea	81.09	0.00e+00	677.00
IUUC-Bdi-014849	Brachypodium distachyon	44.35	2.00e-97	348.00
IUUC-Bol-015325	Brassica oleracea	45.45	8.00e-97	345.00
IUUC-Bra-017064	Brassica rapa	46.31	3.00e-97	347.00
IUUC-Cel-018378	Caenorhabditis elegans	47.65	4.00e-95	340.00
IUUC-Cja-019547	Callithrix jacchus	46.85	5.00e-100	358.00
IUUC-Cfa-020031	Canis familiaris	46.85	6.00e-100	357.00
IUUC-Cpo-021554	Cavia porcellus	46.85	2.00e-99	355.00
IUUC-Cre-022830	Chlamydomonas reinhardtii	36.64	7.00e-60	223.00
IUUC-Csa-023146	Chlorocebus sabaeus	46.58	1.00e-99	356.00
IUUC-Cho-024679	Choloepus hoffmanni	46.89	3.00e-94	338.00
IUUC-Cin-025415	Ciona intestinalis	45.45	2.00e-91	328.00
IUUC-Csv-026003	Ciona savignyi	44.35	2.00e-90	324.00
IUUC-Cne-026983	Cryptococcus neoformans	43.60	2.00e-87	315.00
IUUC-Cme-027147	Cyanidioschyzon merolae	43.77	1.00e-96	344.00
IUUC-Dre-028545	Danio rerio	46.58	5.00e-100	357.00
IUUC-Dno-029677	Dasypus novemcinctus	46.85	3.00e-100	358.00
IUUC-Dse-031371	Dothistroma septosporum	62.11	3.00e-141	493.00
IUUC-Dme-031663	Drosophila melanogaster	43.24	8.00e-94	336.00
IUUC-Ete-032511	Echinops telfairi	39.18	5.00e-76	278.00
IUUC-Eca-034152	Equus caballus	46.85	6.00e-100	357.00
IUUC-Eeu-034560	Erinaceus europaeus	36.65	3.00e-28	119.00
IUUC-Fca-035820	Felis catus	46.85	5.00e-100	357.00
IUUC-Fox-037958	Fusarium oxysporum	82.49	0.00e+00	678.00
IUUC-Fso-038162	Fusarium solani	82.73	0.00e+00	676.00
IUUC-Gmo-039708	Gadus morhua	46.61	1.00e-99	355.00
IUUC-Ggr-040031	Gaeumannomyces graminis	72.31	2.00e-171	593.00
IUUC-Gga-040963	Gallus gallus	46.85	8.00e-100	357.00
IUUC-Gac-041541	Gasterosteus aculeatus	46.30	6.00e-97	347.00
IUUC-Gma-044352	Glycine max	44.72	1.00e-98	352.00
IUUC-Ggo-045564	Gorilla gorilla	46.85	5.00e-100	357.00
IUUC-Hsa-045833	Homo sapiens	46.85	4.00e-100	358.00
IUUC-Hvu-047848	Hordeum vulgare	40.34	5.00e-71	260.00
IUUC-Itr-048083	Ictidomys tridecemlineatus	46.85	7.00e-100	357.00
IUUC-Kpa-049308	Komagataella pastoris	52.02	7.00e-115	405.00
IUUC-Lch-050525	Latimeria chalumnae	46.85	6.00e-99	354.00
IUUC-Lpe-051364	Leersia perrieri	38.29	1.00e-78	285.00
IUUC-Loc-052696	Lepisosteus oculatus	46.56	2.00e-99	355.00
IUUC-Lma-052951	Leptosphaeria maculans	70.97	2.00e-168	584.00
IUUC-Laf-053653	Loxodonta africana	46.85	2.00e-99	356.00
IUUC-Mcc-055797	Macaca mulatta	46.85	5.00e-100	357.00
IUUC-Meu-056331	Macropus eugenii	50.93	1.00e-83	303.00
IUUC-Mor-057168	Magnaporthe oryzae	75.53	0.00e+00	632.00
IUUC-Mpo-057510	Magnaporthe poae	71.66	9.00e-111	391.00
IUUC-Mtr-058032	Medicago truncatula	44.89	2.00e-97	348.00
IUUC-Mla-058852	Melampsora laricipopulina	46.58	1.00e-104	371.00
IUUC-Mga-059311	Meleagris gallopavo	46.85	1.00e-99	356.00
IUUC-Mvi-060544	Microbotryum violaceum	47.97	2.00e-104	371.00
IUUC-Mmr-061143	Microcebus murinus	46.85	6.00e-100	357.00
IUUC-Mdo-061977	Monodelphis domestica	46.85	1.00e-99	356.00
IUUC-Mmu-063922	Mus musculus	46.85	9.00e-100	357.00
IUUC-Mac-064961	Musa acuminata	44.47	2.00e-99	355.00
IUUC-Mpu-066079	Mustela putorius furo	47.69	5.00e-97	347.00
IUUC-Mlu-067247	Myotis lucifugus	46.85	2.00e-100	358.00
IUUC-Nfi-068255	Neosartorya fischeri	66.75	6.00e-152	528.00
IUUC-Ncr-068909	Neurospora crassa	80.71	0.00e+00	667.00
IUUC-Nle-068994	Nomascus leucogenys	46.85	5.00e-100	357.00
IUUC-Opr-071079	Ochotona princeps	46.85	6.00e-100	357.00
IUUC-Ont-071971	Oreochromis niloticus	46.30	2.00e-98	352.00
IUUC-Oan-073135	Ornithorhynchus anatinus	47.12	5.00e-100	357.00
IUUC-Ocu-073982	Oryctolagus cuniculus	46.85	6.00e-100	357.00
IUUC-Oba-075297	Oryza barthii	38.84	2.00e-81	295.00
IUUC-Obr-076641	Oryza brachyantha	43.53	1.00e-95	342.00
IUUC-Ogl-077539	Oryza glaberrima	41.72	4.00e-73	267.00
IUUC-Ogu-078807	Oryza glumaepatula	38.84	3.00e-81	294.00
IUUC-Oin-079229	Oryza indica	43.53	5.00e-96	343.00
IUUC-Olo-080371	Oryza longistaminata	38.84	2.00e-81	294.00
IUUC-Ome-081149	Oryza meridionalis	38.57	2.00e-80	291.00
IUUC-Oni-082970	Oryza nivara	38.84	2.00e-81	294.00
IUUC-Opu-083415	Oryza punctata	38.57	8.00e-79	286.00
IUUC-Oru-085236	Oryza rufipogon	38.84	2.00e-81	295.00
IUUC-Ola-087421	Oryzias latipes	46.85	4.00e-100	357.00
IUUC-Olu-087821	Ostreococcus lucimarinus	43.14	1.00e-88	318.00
IUUC-Oga-088132	Otolemur garnettii	46.85	6.00e-100	357.00
IUUC-Oar-089513	Ovis aries	46.85	9.00e-100	357.00
IUUC-Ptr-090717	Pan troglodytes	46.85	4.00e-100	358.00
IUUC-Pan-092108	Papio anubis	46.85	6.00e-100	357.00
IUUC-Psi-093892	Pelodiscus sinensis	46.85	2.00e-99	356.00
IUUC-Pma-094561	Petromyzon marinus	46.85	1.00e-99	357.00
IUUC-Pno-094943	Phaeosphaeria nodorum	66.75	2.00e-165	574.00
IUUC-Ppa-095359	Physcomitrella patens	44.44	1.00e-98	352.00
IUUC-Pfo-096516	Poecilia formosa	46.17	9.00e-97	346.00
IUUC-Pab-097759	Pongo abelii	46.85	5.00e-100	357.00
IUUC-Pop-099553	Populus trichocarpa	46.07	1.00e-98	352.00
IUUC-Ppe-101957	Prunus persica	46.01	1.00e-100	359.00
IUUC-Pva-102918	Pteropus vampyrus	46.85	8.00e-100	357.00
IUUC-Pgr-103594	Puccinia graminis	49.19	8.00e-110	389.00
IUUC-Pte-104419	Pyrenophora teres	69.21	7.00e-170	588.00
IUUC-Pyt-104718	Pyrenophora triticirepentis	70.37	8.00e-168	582.00
IUUC-Rno-105838	Rattus norvegicus	46.85	7.00e-100	357.00
IUUC-Sce-106331	Saccharomyces cerevisiae	45.53	3.00e-95	340.00
IUUC-Sha-107435	Sarcophilus harrisii	46.85	9.00e-100	357.00
IUUC-Sja-107796	Schizosaccharomyces japonicus	53.78	4.00e-120	423.00
IUUC-Spo-108163	Schizosaccharomyces pombe	53.64	4.00e-121	426.00
IUUC-Smo-109602	Selaginella moellendorffii	47.78	4.00e-100	356.00
IUUC-Sit-109729	Setaria italica	42.98	3.00e-94	337.00
IUUC-Sly-111679	Solanum lycopersicum	44.35	7.00e-98	349.00
IUUC-Sar-113157	Sorex araneus	46.85	1.00e-99	356.00
IUUC-Sbi-114853	Sorghum bicolor	42.70	2.00e-93	335.00
IUUC-Sre-115085	Sporisorium reilianum	47.51	3.00e-95	340.00
IUUC-Ssc-116286	Sus scrofa	46.45	5.00e-98	351.00
IUUC-Tgu-117219	Taeniopygia guttata	46.85	2.00e-99	355.00
IUUC-Tru-117550	Takifugu rubripes	46.85	8.00e-100	355.00
IUUC-Tsy-119294	Tarsius syrichta	46.85	3.00e-100	358.00
IUUC-Tni-120561	Tetraodon nigroviridis	46.85	1.00e-99	356.00
IUUC-Tca-121347	Theobroma cacao	45.45	3.00e-99	354.00
IUUC-Tre-122018	Trichoderma reesei	79.95	0.00e+00	660.00
IUUC-Tvi-122413	Trichoderma virens	79.69	0.00e+00	656.00
IUUC-Tae-123904	Triticum aestivum	42.98	6.00e-95	340.00
IUUC-Tme-127077	Tuber melanosporum	67.82	2.00e-147	514.00
IUUC-Tbe-127744	Tupaia belangeri	36.36	4.00e-55	208.00
IUUC-Ttr-128777	Tursiops truncatus	39.18	5.00e-76	278.00
IUUC-Uma-129568	Ustilago maydis	47.38	3.00e-92	330.00
IUUC-Vda-129834	Verticillium dahliae	85.18	0.00e+00	715.00
IUUC-Vvi-131360	Vitis vinifera	45.30	1.00e-98	352.00
IUUC-Xtr-132630	Xenopus tropicalis	47.40	1.00e-99	356.00
IUUC-Xma-133665	Xiphophorus maculatus	46.58	7.00e-99	353.00
IUUC-Yli-134556	Yarrowia lipolytica	46.95	6.00e-101	359.00
IUUC-Zma-135787	Zea mays	42.98	2.00e-94	338.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence