iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111620

Ensembl Protein ID

Solyc03g120080.2.1

UniProt Accession

K4BMF7; K4BMF7_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc03g120080.2	Solyc03g120080.2.1	Solyc03g120080.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-29	100.4	281	315
UBD/Beta-Prp	1.30e-48	166.4	115	367

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           gH+++v++l f ++  +l+s+s+D+t+++WD+ +g
   Q: 281  GHEGPVHGLVFsPTnATLASSSWDKTVRLWDVFDG 315
           8***********555779*************9777 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrd.gtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
           it   f + +++l+ g+++ g + vw++++++++ + +gh   v+++ +spd+++ +tg++D+ ikvw +s+g c++t+++h++ v++l+f
   Q: 115  ITTAVFNDLGNWLTFGCARlGQLLVWEWKSESYILKQQGHYFDVNCLAYSPDSQLVATGADDNKIKVWTVSSGFCFVTFSEHTNAVTALHF 205
           565667777888888886557888999999999********************************************************** PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrt.vrlWdlktgkllrtltgghtdsvyslsfdsng 192
           +p ++ l+s+s d t+r wdl  +  ++++ +++++   +++ +++g ++ +G+lD++ + +W++ktg+ll+ l+g h+++v+ l f+++ 
   Q: 206  MPGNHCLLSASLDGTVRAWDLLRYRNFKTFTTPTSKQFVSLAADQSGEVICAGTLDSFeIFVWSMKTGRLLDILSG-HEGPVHGLVFSPTN 295
           **99************************999999999*******************965****************9.************** PP
   S: 193  kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn 264
             l+s s d+tv+lwd+  g+  ++   ht  v+ v   p+++ l++ + Dg i +Wd   g l+ t+++++
   Q: 296  ATLASSSWDKTVRLWDVFDGKGAVETFPHTHDVLTVVYRPDGKQLACSTLDGHIHFWDPFEGLLMYTIEGRR 367
           **********************************************************87777777776665 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MNYRFQNLLG APYRGGNALV VNNSLLISPI GNRVAVTDLI KSETITLPSQ SSTNLRRIAA 60
SPDGVFLLAI DENNRCLFIN LLRRAVLHRI TFKHPVAAAK FSPDGQLIAV AAEKITTAVF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAATTATA GGTTCCAGAA TCTCCTCGGA GCTCCTTACA GAGGCGGCAA TGCTTTAGTA 60
GTGAACAATA GTCTTCTTAT CTCCCCTATT GGTAACCGTG TTGCCGTCAC TGACCTCATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR027145--PWP2
IPR011044--Quino_amine_DH_bsu
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0009553--P:embryo sac development
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000028--P:ribosomal small subunit assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001932	Ailuropoda melanoleuca	47.14	2.00e-160	558.00
IUUC-Atr-003033	Amborella trichopoda	76.44	0.00e+00	913.00
IUUC-Apl-003219	Anas platyrhynchos	48.34	4.00e-163	568.00
IUUC-Aca-004950	Anolis carolinensis	48.58	2.00e-161	561.00
IUUC-Aly-006213	Arabidopsis lyrata	76.98	0.00e+00	876.00
IUUC-Ath-006593	Arabidopsis thaliana	76.62	0.00e+00	874.00
IUUC-Ago-007916	Ashbya gossypii	45.05	4.00e-141	494.00
IUUC-Acl-008225	Aspergillus clavatus	46.22	8.00e-154	536.00
IUUC-Afl-008390	Aspergillus flavus	45.49	4.00e-153	534.00
IUUC-Afu-009039	Aspergillus fumigatus	47.33	2.00e-156	546.00
IUUC-Ani-009228	Aspergillus nidulans	42.19	6.00e-123	434.00
IUUC-Ang-009663	Aspergillus niger	46.40	1.00e-145	509.00
IUUC-Aor-009923	Aspergillus oryzae	45.49	4.00e-153	534.00
IUUC-Ate-010264	Aspergillus terreus	46.88	3.00e-155	541.00
IUUC-Ame-011648	Astyanax mexicanus	57.58	6.00e-30	121.00
IUUC-Bgr-012066	Blumeria graminis	46.00	6.00e-153	534.00
IUUC-Bta-012399	Bos taurus	47.87	5.00e-158	551.00
IUUC-Bci-013757	Botrytis cinerea	47.58	1.00e-145	509.00
IUUC-Bdi-015028	Brachypodium distachyon	77.92	0.00e+00	903.00
IUUC-Bol-016040	Brassica oleracea	76.62	0.00e+00	892.00
IUUC-Bra-017096	Brassica rapa	76.43	0.00e+00	867.00
IUUC-Cel-018690	Caenorhabditis elegans	37.94	3.00e-109	389.00
IUUC-Cja-019229	Callithrix jacchus	48.76	7.00e-165	573.00
IUUC-Cfa-020504	Canis familiaris	47.59	2.00e-160	559.00
IUUC-Cpo-021574	Cavia porcellus	48.23	4.00e-166	578.00
IUUC-Cre-022756	Chlamydomonas reinhardtii	52.89	1.00e-178	619.00
IUUC-Csa-023436	Chlorocebus sabaeus	48.94	1.00e-158	553.00
IUUC-Cin-025397	Ciona intestinalis	52.25	5.00e-111	394.00
IUUC-Csv-026194	Ciona savignyi	45.96	1.00e-140	493.00
IUUC-Cgl-026684	Colletotrichum gloeosporioides	45.47	2.00e-141	495.00
IUUC-Cne-027031	Cryptococcus neoformans	46.03	2.00e-158	552.00
IUUC-Cme-027276	Cyanidioschyzon merolae	32.56	1.00e-75	277.00
IUUC-Dre-027514	Danio rerio	47.49	3.00e-158	551.00
IUUC-Dno-029191	Dasypus novemcinctus	49.65	1.00e-167	583.00
IUUC-Dor-030149	Dipodomys ordii	46.71	1.00e-160	560.00
IUUC-Dse-031260	Dothistroma septosporum	44.06	2.00e-141	495.00
IUUC-Dme-032043	Drosophila melanogaster	41.78	4.00e-127	448.00
IUUC-Ete-033102	Echinops telfairi	49.29	4.00e-144	504.00
IUUC-Eca-033223	Equus caballus	48.05	3.00e-163	568.00
IUUC-Fca-035795	Felis catus	45.31	2.00e-153	536.00
IUUC-Fal-036830	Ficedula albicollis	48.25	2.00e-163	569.00
IUUC-Fox-037835	Fusarium oxysporum	44.95	8.00e-141	493.00
IUUC-Fso-038324	Fusarium solani	44.97	8.00e-142	497.00
IUUC-Gmo-039355	Gadus morhua	47.41	9.00e-163	566.00
IUUC-Ggr-039840	Gaeumannomyces graminis	45.65	2.00e-134	472.00
IUUC-Gga-040907	Gallus gallus	49.26	2.00e-159	555.00
IUUC-Gac-042624	Gasterosteus aculeatus	47.01	1.00e-155	542.00
IUUC-Gma-043034	Glycine max	83.78	0.00e+00	1013.00
IUUC-Hsa-046327	Homo sapiens	48.58	8.00e-165	573.00
IUUC-Hvu-047416	Hordeum vulgare	78.20	0.00e+00	902.00
IUUC-Itr-049083	Ictidomys tridecemlineatus	49.11	5.00e-165	574.00
IUUC-Kpa-049150	Komagataella pastoris	45.21	4.00e-138	484.00
IUUC-Lch-049460	Latimeria chalumnae	48.59	2.00e-146	512.00
IUUC-Lpe-050840	Leersia perrieri	79.71	0.00e+00	947.00
IUUC-Loc-052733	Lepisosteus oculatus	46.51	2.00e-160	559.00
IUUC-Lma-053277	Leptosphaeria maculans	46.23	5.00e-156	544.00
IUUC-Laf-054294	Loxodonta africana	49.26	3.00e-157	548.00
IUUC-Mcc-054624	Macaca mulatta	48.76	3.00e-165	575.00
IUUC-Meu-056665	Macropus eugenii	44.97	1.00e-85	310.00
IUUC-Mor-057288	Magnaporthe oryzae	45.87	3.00e-144	504.00
IUUC-Mpo-057594	Magnaporthe poae	45.26	3.00e-134	471.00
IUUC-Mtr-058700	Medicago truncatula	84.31	0.00e+00	1013.00
IUUC-Mla-058846	Melampsora laricipopulina	46.94	2.00e-150	525.00
IUUC-Mga-059207	Meleagris gallopavo	41.38	3.00e-130	458.00
IUUC-Mvi-060327	Microbotryum violaceum	49.19	4.00e-166	577.00
IUUC-Mmr-061264	Microcebus murinus	49.36	1.00e-163	569.00
IUUC-Mdo-062327	Monodelphis domestica	47.87	8.00e-159	553.00
IUUC-Mmu-063542	Mus musculus	46.99	2.00e-157	549.00
IUUC-Mac-065142	Musa acuminata	81.72	0.00e+00	977.00
IUUC-Mpu-066098	Mustela putorius furo	47.70	1.00e-161	562.00
IUUC-Mlu-067056	Myotis lucifugus	42.93	2.00e-127	449.00
IUUC-Nfi-068323	Neosartorya fischeri	46.99	4.00e-155	541.00
IUUC-Ncr-068925	Neurospora crassa	43.71	7.00e-146	510.00
IUUC-Nle-068970	Nomascus leucogenys	48.48	3.00e-164	572.00
IUUC-Opr-070966	Ochotona princeps	55.36	9.00e-96	343.00
IUUC-Ont-071252	Oreochromis niloticus	46.99	4.00e-160	558.00
IUUC-Oan-072737	Ornithorhynchus anatinus	47.52	5.00e-156	544.00
IUUC-Oba-075794	Oryza barthii	76.81	0.00e+00	892.00
IUUC-Obr-076617	Oryza brachyantha	78.46	0.00e+00	937.00
IUUC-Ogl-077022	Oryza glaberrima	79.35	0.00e+00	942.00
IUUC-Ogu-078757	Oryza glumaepatula	62.05	0.00e+00	652.00
IUUC-Oin-079813	Oryza indica	78.99	0.00e+00	937.00
IUUC-Olo-080265	Oryza longistaminata	79.35	0.00e+00	943.00
IUUC-Ome-081494	Oryza meridionalis	78.99	0.00e+00	936.00
IUUC-Oni-082639	Oryza nivara	61.86	0.00e+00	648.00
IUUC-Opu-084005	Oryza punctata	79.35	0.00e+00	941.00
IUUC-Oru-084883	Oryza rufipogon	61.86	0.00e+00	650.00
IUUC-Osa-086158	Oryza sativa	79.17	0.00e+00	939.00
IUUC-Ola-086822	Oryzias latipes	47.94	2.00e-160	559.00
IUUC-Oga-088887	Otolemur garnettii	48.58	7.00e-160	556.00
IUUC-Oar-090110	Ovis aries	47.70	3.00e-157	548.00
IUUC-Pan-092808	Papio anubis	48.94	7.00e-166	577.00
IUUC-Psi-093954	Pelodiscus sinensis	49.11	3.00e-167	582.00
IUUC-Pno-094922	Phaeosphaeria nodorum	46.79	4.00e-156	545.00
IUUC-Ppa-095678	Physcomitrella patens	64.63	0.00e+00	699.00
IUUC-Pfo-097175	Poecilia formosa	48.30	4.00e-165	574.00
IUUC-Pab-098155	Pongo abelii	48.48	2.00e-164	572.00
IUUC-Pop-099635	Populus trichocarpa	85.87	0.00e+00	983.00
IUUC-Pca-100947	Procavia capensis	44.94	1.00e-147	516.00
IUUC-Ppe-101552	Prunus persica	85.74	0.00e+00	1027.00
IUUC-Pva-102744	Pteropus vampyrus	49.06	1.00e-149	523.00
IUUC-Pgr-103389	Puccinia graminis	47.25	6.00e-151	527.00
IUUC-Ptt-103953	Puccinia triticina	41.22	5.00e-122	431.00
IUUC-Pte-104079	Pyrenophora teres	45.84	5.00e-153	534.00
IUUC-Pyt-104656	Pyrenophora triticirepentis	46.09	2.00e-154	538.00
IUUC-Rno-105502	Rattus norvegicus	47.16	3.00e-163	568.00
IUUC-Sce-106390	Saccharomyces cerevisiae	46.10	6.00e-151	527.00
IUUC-Sha-107264	Sarcophilus harrisii	42.79	7.00e-95	340.00
IUUC-Sja-107674	Schizosaccharomyces japonicus	46.03	1.00e-154	539.00
IUUC-Spo-108348	Schizosaccharomyces pombe	45.13	3.00e-147	515.00
IUUC-Smo-108982	Selaginella moellendorffii	71.81	0.00e+00	832.00
IUUC-Sit-110304	Setaria italica	78.28	0.00e+00	949.00
IUUC-Stu-112877	Solanum tuberosum	98.22	0.00e+00	1152.00
IUUC-Sbi-114702	Sorghum bicolor	78.82	0.00e+00	955.00
IUUC-Sre-115129	Sporisorium reilianum	49.65	2.00e-156	545.00
IUUC-Ssc-115931	Sus scrofa	45.20	2.00e-100	358.00
IUUC-Tgu-116787	Taeniopygia guttata	48.08	6.00e-164	570.00
IUUC-Tru-118218	Takifugu rubripes	47.06	2.00e-156	546.00
IUUC-Tsy-119401	Tarsius syrichta	47.32	9.00e-127	447.00
IUUC-Tni-120046	Tetraodon nigroviridis	45.69	1.00e-144	506.00
IUUC-Tca-121685	Theobroma cacao	85.20	0.00e+00	1029.00
IUUC-Tre-122154	Trichoderma reesei	45.63	2.00e-150	526.00
IUUC-Tvi-122451	Trichoderma virens	45.25	3.00e-151	528.00
IUUC-Tae-125397	Triticum aestivum	76.65	0.00e+00	757.00
IUUC-Tur-126650	Triticum urartu	78.02	0.00e+00	920.00
IUUC-Tme-127005	Tuber melanosporum	46.86	1.00e-148	519.00
IUUC-Tbe-128102	Tupaia belangeri	55.00	3.00e-94	339.00
IUUC-Ttr-128259	Tursiops truncatus	48.16	1.00e-152	533.00
IUUC-Uma-129511	Ustilago maydis	49.82	4.00e-155	541.00
IUUC-Vda-129833	Verticillium dahliae	42.81	1.00e-126	446.00
IUUC-Vvi-131572	Vitis vinifera	87.17	0.00e+00	1048.00
IUUC-Xtr-131776	Xenopus tropicalis	36.11	8.00e-63	234.00
IUUC-Xma-133887	Xiphophorus maculatus	47.34	2.00e-157	549.00
IUUC-Yli-134427	Yarrowia lipolytica	48.94	3.00e-158	551.00
IUUC-Zma-135980	Zea mays	78.10	0.00e+00	946.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence