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Tag Content
iUUCD ID IUUC-Lch-049805
Ensembl Protein ID ENSLACP00000007009.1
UniProt Accession H3ABI8; H3ABI8_LATCH
Genbank Protein ID ENSLACP00000007009
Protein Name E3 ubiquitin-protein ligase RNF8; RING finger protein 8; RING-type E3 ubiquitin transferase RNF8
Genbank Nucleotide ID AFYH01221479
Gene Name RNF8
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSLACG00000006223.1 ENSLACT00000007068.1 ENSLACP00000007009.1
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/RING 49.79 1.00e-110 398.00 IUUC-Hsa-046249
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Latimeria chalumnae
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53BP1 and BRCA1 ionizing radiation-induced foci (IRIF). H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also catalyzes the formation of 'Lys-48'-linked polyubiquitin chains, leading to degradation of substrate proteins. In addition to its function in damage signaling, also plays a role in higher-order chromatin structure by mediating extensive chromatin decondensation.
E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53BP1 and BRCA1 ionizing radiation-induced foci (IRIF). H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also catalyzes the formation of 'Lys-48'-linked polyubiquitin chains, leading to degradation of substrate proteins. In addition to its function in damage signaling, also plays a role in higher-order chromatin structure by mediating extensive chromatin decondensation.
Protein Sequence
(Fasta)
LGKPARGGGG DGPKLGSRRI GMDTEWLLLE ENTEVTIGRG FGLTYRLTSE VCPLMISRNH 60
CCFKQNAEGQ WTVTDNKSLN GVWVNKERIE PLIAHPLTEG DLIQLGVAVK DSDRAEHEYS 120
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Protein Fasta Sequence



>IUUC-Lch-049805|E3,RING|Latimeria chalumnae
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Nucleotide Sequence
(Fasta)
CTGGGTAAAC CTGCTCGAGG AGGAGGCGGC GATGGTCCCA AACTGGGATC TAGGTCTGAG 60
CAAAGAGCCC CTGCTGCAGG AAGGCCTGAC CCAGGTTCCA GGTCTGAGCA GGGGAAGCCA 120
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Nucleotide Fasta Sequence



>IUUC-Lch-049805|E3,RING|Latimeria chalumnae
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Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR000253--FHA_dom
IPR017335--RNF8
IPR008984--SMAD_FHA_domain
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50006--FHA_DOMAIN
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00498--FHA

SMART

SM00240--FHA
SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002124 Ailuropoda melanoleuca 52.54 8.00e-95 340.00
IUUC-Apl-003664 Anas platyrhynchos 70.09 3.00e-41 160.00
IUUC-Aca-005036 Anolis carolinensis 49.67 6.00e-89 321.00
IUUC-Ago-007705 Ashbya gossypii 36.84 3.00e-06 46.20
IUUC-Ame-011537 Astyanax mexicanus 47.89 1.00e-93 336.00
IUUC-Bta-013297 Bos taurus 51.91 4.00e-101 361.00
IUUC-Cja-019201 Callithrix jacchus 51.29 2.00e-103 369.00
IUUC-Cfa-021041 Canis familiaris 51.48 1.00e-103 369.00
IUUC-Csa-024133 Chlorocebus sabaeus 50.63 3.00e-105 375.00
IUUC-Cho-024624 Choloepus hoffmanni 42.48 8.00e-54 204.00
IUUC-Dre-027918 Danio rerio 45.38 2.00e-86 312.00
IUUC-Dno-029774 Dasypus novemcinctus 52.72 1.00e-105 376.00
IUUC-Dor-030190 Dipodomys ordii 41.92 6.00e-48 184.00
IUUC-Ete-032301 Echinops telfairi 47.33 6.00e-70 258.00
IUUC-Eca-033607 Equus caballus 51.87 4.00e-89 321.00
IUUC-Eeu-034888 Erinaceus europaeus 55.91 7.00e-60 224.00
IUUC-Fca-036075 Felis catus 52.13 8.00e-109 387.00
IUUC-Fal-037569 Ficedula albicollis 52.17 2.00e-94 339.00
IUUC-Gmo-038588 Gadus morhua 43.13 2.00e-76 279.00
IUUC-Gga-040777 Gallus gallus 52.93 1.00e-101 363.00
IUUC-Gac-042463 Gasterosteus aculeatus 43.58 7.00e-65 241.00
IUUC-Ggo-045269 Gorilla gorilla 51.69 5.00e-106 377.00
IUUC-Hsa-046249 Homo sapiens 50.84 5.00e-100 357.00
IUUC-Itr-048314 Ictidomys tridecemlineatus 52.62 9.00e-106 377.00
IUUC-Loc-052377 Lepisosteus oculatus 52.24 2.00e-98 352.00
IUUC-Mcc-055344 Macaca mulatta 50.95 3.00e-105 375.00
IUUC-Meu-055950 Macropus eugenii 49.15 2.00e-87 315.00
IUUC-Mga-060049 Meleagris gallopavo 52.03 2.00e-96 345.00
IUUC-Mmr-061431 Microcebus murinus 51.71 4.00e-100 358.00
IUUC-Mdo-062016 Monodelphis domestica 51.87 1.00e-88 321.00
IUUC-Mmu-063235 Mus musculus 48.52 2.00e-94 339.00
IUUC-Mpu-066449 Mustela putorius furo 52.32 1.00e-110 393.00
IUUC-Mlu-067588 Myotis lucifugus 52.12 1.00e-89 323.00
IUUC-Nle-069192 Nomascus leucogenys 51.69 9.00e-106 377.00
IUUC-Opr-070300 Ochotona princeps 42.46 4.00e-72 265.00
IUUC-Ont-071998 Oreochromis niloticus 45.56 3.00e-71 262.00
IUUC-Oan-073610 Ornithorhynchus anatinus 63.07 2.00e-50 192.00
IUUC-Ocu-074603 Oryctolagus cuniculus 52.73 3.00e-102 365.00
IUUC-Ola-086681 Oryzias latipes 42.28 5.00e-77 281.00
IUUC-Oga-088183 Otolemur garnettii 52.85 2.00e-107 382.00
IUUC-Oar-090255 Ovis aries 50.55 2.00e-92 332.00
IUUC-Ptr-091029 Pan troglodytes 50.21 1.00e-99 357.00
IUUC-Pan-092241 Papio anubis 51.06 1.00e-105 376.00
IUUC-Psi-093506 Pelodiscus sinensis 54.49 6.00e-102 364.00
IUUC-Pma-094579 Petromyzon marinus 56.82 3.00e-24 105.00
IUUC-Pfo-097014 Poecilia formosa 44.54 4.00e-66 245.00
IUUC-Pab-098530 Pongo abelii 51.60 1.00e-103 369.00
IUUC-Pca-100939 Procavia capensis 38.43 9.00e-63 234.00
IUUC-Pva-103148 Pteropus vampyrus 47.45 3.00e-93 335.00
IUUC-Rno-105338 Rattus norvegicus 50.42 3.00e-99 355.00
IUUC-Sce-106402 Saccharomyces cerevisiae 33.63 5.00e-10 59.30
IUUC-Sha-107187 Sarcophilus harrisii 72.02 2.00e-56 212.00
IUUC-Sar-113356 Sorex araneus 43.68 1.00e-67 249.00
IUUC-Sre-115193 Sporisorium reilianum 30.21 1.00e-06 48.90
IUUC-Ssc-116290 Sus scrofa 54.24 3.00e-116 411.00
IUUC-Tru-117910 Takifugu rubripes 42.68 3.00e-68 252.00
IUUC-Tsy-119329 Tarsius syrichta 50.00 3.00e-91 328.00
IUUC-Tni-120521 Tetraodon nigroviridis 42.55 7.00e-69 254.00
IUUC-Ttr-128997 Tursiops truncatus 46.15 2.00e-89 322.00
IUUC-Vpa-130154 Vicugna pacos 48.53 3.00e-103 369.00
IUUC-Xtr-132805 Xenopus tropicalis 49.36 9.00e-97 347.00
Created Date 25-Jun-2017

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