iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007495

UUCD1 version

UUC-ArT-01599

Ensembl Protein ID

AT4G27960.2

UniProt Accession

P35132; Q42014; Q4TZ01; Q8RXQ0; Q9FPH9; UBC9_ARATH

Genbank Protein ID

CAA78714.1; CAA51201.1; AAA32894.1; AAY44849.1; CAB36765.1; CAB79598.1; AEE85413.1; AAG40371.1; AAL85988.1; AAN13102.1; CAA79198.1

Protein Name

SUMO-conjugating enzyme UBC9; RING-type E3 SUMO transferase UBC9; UBCAT4B; Ubiquitin carrier protein 9; Ubiquitin-conjugating enzyme E2 9; Ubiquitin-conjugating enzyme E2-17 kDa; Ubiquitin-protein ligase 9

Genbank Nucleotide ID

Z14990; X72626; L00639; DQ027023; AL035524; AL161572; CP002687; AF325019; AY080741; AY142644; Z18473

Gene Name

UBC9; UBC4B; At4g27960; T13J8.70

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G27960	AT4G27960.2	AT4G27960.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E2/UBC	E2_UBC	19384408

Classification

Family	E-value	Score	Start	End
E2/UBC	3.50e-56	189.7	35	169
UBD/UBC-like/UBD_UBC	8.50e-75	250.3	35	172

Active Site

Position(s)	Description	Evidence
85	Glycyl thioester intermediate	{ECO:0000255\|PROSITE-ProRule:PRU00388, ECO:0000255\|PROSITE-ProRule:PRU10133}

Domain Profile

E2/UBC

   S: 1    RlkkelkelekdppegisakpvdesdltewevlilGpedtpYeggvFkleiefpedYPfkPPkvkfltkifhPnvyenGkvClsilkeeekWspalsv 98
           R+ kelk+l+kdpp+++sa+pv e d+++w+++i+Gp+d+pY ggvF ++i+fp+dYPfkPPkv f tk+fhPn+++nG++Cl+ilk  e+Wspal++
   Q: 35   RILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK--EQWSPALTI 129
           899*********************.9************************************************************9..********* PP
   S: 99   esvllsiqsllaepnpesplneeaaellkknreeykkkvr 138
           ++vllsi+sll++pnp++pl  e+a+++k+++++y++++r
   Q: 130  SKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTAR 169
           ************************************9987 PP

UBD/UBC-like/UBD_UBC

   S: 1    rikkelkdllrdeeaqisadlvdddlfelratiagppdspyeggvffltiklptdypfkppkvafitkiyhpninsngsicldilrsqwsaaltlskv 98
           ri kelkdl++d+++ +sa++v +d+f+++ati+gp+dspy ggvf +ti++p dypfkppkvaf tk++hpninsngsicldil++qws+alt+skv
   Q: 35   RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKV 132
           899*********************************************************************************************** PP
   S: 99   llslcslladaepddplvaeiariyktdkekykriarewt 138
           lls+csll+d++pddplv+eia++yktdk+ky+ +ar wt
   Q: 133  LLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWT 172
           ***************************************8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Interacts with CHIP.

Protein Sequence
(Fasta)

MFFFFLIHLT IGLVFDCRVF NWNLDRGILE MASKRILKEL KDLQKDPPTS CSAGPVAEDM 60
FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAGCAGCAGA GTCCACTAAT CAAACGAACC AGAATTTACC CGCACCCTAT TTATTGTGGT 60
CGCGACCACA CAACATTTTC AACTTCTTCT TCTCTTCCGT TTCACCACCC TTTCTTCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0547--Nucleotide-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR000608--UBQ-conjugat_E2
IPR023313--UBQ-conjugating_AS
IPR016135--UBQ-conjugating_enzyme/RWD

PROSITE

PS00183--UBIQUITIN_CONJUGAT_1
PS50127--UBIQUITIN_CONJUGAT_2

Pfam

PF00179--UQ_con

Gene Ontology

GO:0005524--F:ATP binding
GO:0016740--F:transferase activity
GO:0016925--P:protein sumoylation

KEGG

ath:AT4G27960

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-004043	Anas platyrhynchos	78.87	1.00e-67	247.00
IUUC-Aly-006528	Arabidopsis lyrata	99.32	2.00e-85	306.00
IUUC-Ame-011566	Astyanax mexicanus	80.95	4.00e-71	259.00
IUUC-Bol-015822	Brassica oleracea	99.32	3.00e-85	306.00
IUUC-Bra-016748	Brassica rapa	96.77	1.00e-88	320.00
IUUC-Dre-028568	Danio rerio	80.95	4.00e-71	259.00
IUUC-Dno-028952	Dasypus novemcinctus	80.85	4.00e-68	249.00
IUUC-Eeu-034766	Erinaceus europaeus	79.29	2.00e-65	239.00
IUUC-Fal-036904	Ficedula albicollis	80.00	3.00e-67	246.00
IUUC-Gmo-038775	Gadus morhua	80.27	1.00e-70	257.00
IUUC-Lpe-050972	Leersia perrieri	96.62	9.00e-84	301.00
IUUC-Meu-056462	Macropus eugenii	78.42	2.00e-65	240.00
IUUC-Mga-059237	Meleagris gallopavo	80.00	3.00e-67	246.00
IUUC-Mac-065211	Musa acuminata	94.12	2.00e-84	303.00
IUUC-Opr-070191	Ochotona princeps	79.86	9.00e-67	244.00
IUUC-Ont-072562	Oreochromis niloticus	80.95	9.00e-71	258.00
IUUC-Obr-076658	Oryza brachyantha	96.62	9.00e-84	301.00
IUUC-Ogu-078091	Oryza glumaepatula	92.00	8.00e-82	296.00
IUUC-Oni-082391	Oryza nivara	92.76	3.00e-83	300.00
IUUC-Oru-085167	Oryza rufipogon	92.76	4.00e-83	300.00
IUUC-Olu-087615	Ostreococcus lucimarinus	81.63	3.00e-70	256.00
IUUC-Pop-098878	Populus trichocarpa	94.08	8.00e-85	305.00
IUUC-Sly-111571	Solanum lycopersicum	97.97	2.00e-84	303.00
IUUC-Stu-112764	Solanum tuberosum	97.97	2.00e-84	303.00
IUUC-Sar-113302	Sorex araneus	80.58	5.00e-67	245.00
IUUC-Sbi-114213	Sorghum bicolor	95.95	2.00e-83	300.00
IUUC-Tca-121413	Theobroma cacao	97.30	8.00e-84	301.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence