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Tag Content
iUUCD ID IUUC-Aly-005632
Ensembl Protein ID fgenesh2_kg.2__1642__AT1G73720.1
UniProt Accession D7KRL5; D7KRL5_ARALL
Genbank Protein ID EFH63760.1
Protein Name Transducin family protein
Genbank Nucleotide ID GL348714
Gene Name SMU1; ARALYDRAFT_476512
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh2_kg.2__1642__AT1G73720.1 fgenesh2_kg.2__1642__AT1G73720.1 fgenesh2_kg.2__1642__AT1G73720.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.10e-32 111.3 262 299
UBD/Beta-Prp 3.80e-52 178.0 211 511
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H d+v c++f  d  ll+sGs Dg+ik+W++rtg +++
   Q: 262  HDDPVLCIDFsRDsELLASGSQDGKIKIWRIRTGLCIR 299
           99*********777********************9986 PP
   

   UBD/Beta-Prp
   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgkilvtgseDrti 76
            +ks   c  fspd+++la++s dg i+vwd+ +gkl         +++  h+++v +++fs+d+++l++gs+D+ i
   Q: 211  GKKSHAECARFSPDGQFLASSSVDGFIEVWDYISGKLkkdlqyqaDETFMMHDDPVLCIDFSRDSELLASGSQDGKI 287
           5788899******************************888888877788889999********************** PP
   S: 77   kvwdlstgkcvhtlk.ghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnll 152
           k+w ++tg c++ ++ +h++ v+slsfs++g+ l+s+s d+t+r+  l++g+ l+  ++gh++ vn + + +dg+ +
   Q: 288  KIWRIRTGLCIRRFEhAHSQGVTSLSFSRDGSQLLSTSFDQTARIHGLKSGKLLK-EFRGHTSYVNNAIFTSDGSRI 363
           **************999**************************************.********************* PP
   S: 153  vsGslDrtvrlWdlktgkllrtl......tgghtdsvysls.fdsngkelvsgsldgtvklwdlqtgecvrtlng.h 221
           +++s D tv++Wd+kt ++l+t+      ++  + sv+s+  f +n +++v + + +++ +  lq g++v+++    
   Q: 364  ITASSDCTVKVWDSKTTDCLQTFkpppplRQ-SDASVNSIHlFPKNTEHIVVCNKTSSIYIMTLQ-GQVVKSFSSgN 438
           ****************************654.8********9999*******************6.66777776515 PP
   S: 222  tdnvksvrfs..pnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwk 293
           ++    v+++   +++++++ ++D+ ++++++++g l + +  h++ vi +++ ++ +n l++ sed++ ++wk
   Q: 439  REGGDFVAACvsTKGDWIYCIGEDKKLYCFNYQTGGLEHFMMVHEKDVIGITH-HPHRNLLATYSEDCTMKLWK 511
           55555555545578***************************************.*******************8 PP
   
Organism Arabidopsis lyrata
Protein Sequence
(Fasta)
MALEIEARDV IKIMLQFCKE NSLNQTFQTL QSECQVSLNT VDSVETFISD INSGRWDSVL 60
PQVSQLKLPR NKLEDLYEQI VLEMIELREL DTARAILRQT QVMGVMKQEQ PERYLRMEHL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Aly-005632|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGTCTCCGGC GAAAACCCAC TACGACTGAC TATGGCGCTC GAAATCGAAG CTCGAGAGTA 60
AGATTTCGCT TTCTTTTACA AACCCTAGTT TTCGTTTTAG TTGCACTGAT TGAATTGTGT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Aly-005632|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR006595--CTLH_C
IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40
Gene Ontology

GO:0005634--C:nucleus
GO:0008380--P:RNA splicing
KEGG aly:ARALYDRAFT_476512
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000857 Aegilops tauschii 86.81 6.00e-74 268.00
IUUC-Aml-001330 Ailuropoda melanoleuca 64.72 0.00e+00 720.00
IUUC-Atr-002570 Amborella trichopoda 84.74 0.00e+00 934.00
IUUC-Apl-003826 Anas platyrhynchos 65.18 0.00e+00 692.00
IUUC-Aca-005183 Anolis carolinensis 64.47 0.00e+00 714.00
IUUC-Ath-007219 Arabidopsis thaliana 97.85 0.00e+00 1049.00
IUUC-Ame-011374 Astyanax mexicanus 63.94 0.00e+00 714.00
IUUC-Bta-012890 Bos taurus 64.72 0.00e+00 720.00
IUUC-Bdi-014061 Brachypodium distachyon 82.19 0.00e+00 922.00
IUUC-Bol-016332 Brassica oleracea 92.95 0.00e+00 1016.00
IUUC-Bra-017612 Brassica rapa 92.77 0.00e+00 1016.00
IUUC-Cel-018238 Caenorhabditis elegans 50.20 4.00e-162 563.00
IUUC-Cja-019336 Callithrix jacchus 64.72 0.00e+00 720.00
IUUC-Cfa-021108 Canis familiaris 64.91 0.00e+00 721.00
IUUC-Cpo-022052 Cavia porcellus 64.72 0.00e+00 720.00
IUUC-Cre-022595 Chlamydomonas reinhardtii 63.48 0.00e+00 714.00
IUUC-Csa-023488 Chlorocebus sabaeus 64.72 0.00e+00 720.00
IUUC-Cho-025010 Choloepus hoffmanni 57.12 2.00e-177 615.00
IUUC-Cin-025251 Ciona intestinalis 62.06 0.00e+00 694.00
IUUC-Csv-026092 Ciona savignyi 58.13 0.00e+00 630.00
IUUC-Dre-027382 Danio rerio 63.55 0.00e+00 709.00
IUUC-Dno-029007 Dasypus novemcinctus 64.91 0.00e+00 721.00
IUUC-Dor-030180 Dipodomys ordii 55.81 1.00e-126 445.00
IUUC-Dme-031762 Drosophila melanogaster 59.84 0.00e+00 677.00
IUUC-Ete-032933 Echinops telfairi 63.95 3.00e-171 593.00
IUUC-Eca-033864 Equus caballus 64.88 0.00e+00 708.00
IUUC-Eeu-034635 Erinaceus europaeus 58.91 3.00e-149 520.00
IUUC-Fca-036119 Felis catus 64.72 0.00e+00 720.00
IUUC-Fal-037396 Ficedula albicollis 65.33 0.00e+00 703.00
IUUC-Gmo-038962 Gadus morhua 63.74 0.00e+00 706.00
IUUC-Gga-040134 Gallus gallus 64.91 0.00e+00 721.00
IUUC-Gac-041630 Gasterosteus aculeatus 63.35 0.00e+00 709.00
IUUC-Gma-043928 Glycine max 87.06 0.00e+00 961.00
IUUC-Ggo-045061 Gorilla gorilla 64.66 0.00e+00 716.00
IUUC-Hsa-046215 Homo sapiens 64.72 0.00e+00 720.00
IUUC-Hvu-047799 Hordeum vulgare 82.22 0.00e+00 645.00
IUUC-Itr-048826 Ictidomys tridecemlineatus 64.72 0.00e+00 720.00
IUUC-Lch-050209 Latimeria chalumnae 60.31 0.00e+00 656.00
IUUC-Lpe-050740 Leersia perrieri 82.94 0.00e+00 927.00
IUUC-Loc-052739 Lepisosteus oculatus 59.92 0.00e+00 658.00
IUUC-Laf-053895 Loxodonta africana 64.59 0.00e+00 716.00
IUUC-Mcc-055183 Macaca mulatta 64.72 0.00e+00 720.00
IUUC-Mtr-057730 Medicago truncatula 85.10 0.00e+00 926.00
IUUC-Mga-059222 Meleagris gallopavo 66.03 2.00e-172 598.00
IUUC-Mmr-061749 Microcebus murinus 64.88 0.00e+00 709.00
IUUC-Mdo-062920 Monodelphis domestica 64.52 0.00e+00 719.00
IUUC-Mmu-063228 Mus musculus 64.72 0.00e+00 720.00
IUUC-Mac-065084 Musa acuminata 84.12 0.00e+00 936.00
IUUC-Mpu-066162 Mustela putorius furo 64.72 0.00e+00 720.00
IUUC-Mlu-067471 Myotis lucifugus 63.94 0.00e+00 714.00
IUUC-Nle-070129 Nomascus leucogenys 64.72 0.00e+00 720.00
IUUC-Opr-071176 Ochotona princeps 64.88 0.00e+00 708.00
IUUC-Ont-071830 Oreochromis niloticus 63.74 0.00e+00 714.00
IUUC-Oan-072778 Ornithorhynchus anatinus 64.91 0.00e+00 721.00
IUUC-Ocu-074570 Oryctolagus cuniculus 64.72 0.00e+00 720.00
IUUC-Oba-075507 Oryza barthii 82.55 0.00e+00 926.00
IUUC-Obr-076672 Oryza brachyantha 83.53 0.00e+00 936.00
IUUC-Ogl-077110 Oryza glaberrima 82.55 0.00e+00 926.00
IUUC-Ogu-077976 Oryza glumaepatula 82.55 0.00e+00 926.00
IUUC-Oin-079525 Oryza indica 82.55 0.00e+00 926.00
IUUC-Olo-080391 Oryza longistaminata 80.19 0.00e+00 917.00
IUUC-Oni-082778 Oryza nivara 82.55 0.00e+00 926.00
IUUC-Opu-083710 Oryza punctata 82.78 0.00e+00 929.00
IUUC-Oru-084250 Oryza rufipogon 82.55 0.00e+00 926.00
IUUC-Osa-085363 Oryza sativa 82.55 0.00e+00 926.00
IUUC-Ola-087092 Oryzias latipes 63.55 0.00e+00 712.00
IUUC-Olu-087753 Ostreococcus lucimarinus 52.82 2.00e-148 518.00
IUUC-Oga-088278 Otolemur garnettii 60.19 0.00e+00 641.00
IUUC-Oar-089664 Ovis aries 64.34 0.00e+00 714.00
IUUC-Ptr-090991 Pan troglodytes 64.72 0.00e+00 720.00
IUUC-Pan-092697 Papio anubis 64.72 0.00e+00 720.00
IUUC-Psi-093204 Pelodiscus sinensis 65.13 0.00e+00 702.00
IUUC-Ppa-095325 Physcomitrella patens 80.20 0.00e+00 892.00
IUUC-Pfo-096988 Poecilia formosa 63.74 0.00e+00 712.00
IUUC-Pab-098288 Pongo abelii 64.72 0.00e+00 720.00
IUUC-Pop-098787 Populus trichocarpa 85.35 0.00e+00 954.00
IUUC-Pca-100583 Procavia capensis 60.32 0.00e+00 639.00
IUUC-Ppe-101307 Prunus persica 85.49 0.00e+00 945.00
IUUC-Pva-102711 Pteropus vampyrus 64.72 0.00e+00 720.00
IUUC-Rno-105614 Rattus norvegicus 64.72 0.00e+00 720.00
IUUC-Sha-107017 Sarcophilus harrisii 64.72 0.00e+00 720.00
IUUC-Smo-108800 Selaginella moellendorffii 76.17 0.00e+00 821.00
IUUC-Sit-110278 Setaria italica 83.53 0.00e+00 907.00
IUUC-Sly-111777 Solanum lycopersicum 85.29 0.00e+00 940.00
IUUC-Stu-112293 Solanum tuberosum 85.29 0.00e+00 940.00
IUUC-Sar-112955 Sorex araneus 57.98 2.00e-179 621.00
IUUC-Sbi-114802 Sorghum bicolor 83.33 0.00e+00 905.00
IUUC-Ssc-116054 Sus scrofa 64.72 0.00e+00 720.00
IUUC-Tgu-116909 Taeniopygia guttata 64.26 0.00e+00 711.00
IUUC-Tru-118195 Takifugu rubripes 64.52 0.00e+00 720.00
IUUC-Tsy-119420 Tarsius syrichta 59.26 0.00e+00 636.00
IUUC-Tni-120416 Tetraodon nigroviridis 64.33 0.00e+00 715.00
IUUC-Tca-121653 Theobroma cacao 87.30 0.00e+00 947.00
IUUC-Tae-125609 Triticum aestivum 82.16 0.00e+00 917.00
IUUC-Tur-126197 Triticum urartu 80.05 0.00e+00 654.00
IUUC-Tbe-128009 Tupaia belangeri 65.38 2.00e-136 478.00
IUUC-Ttr-128719 Tursiops truncatus 58.09 0.00e+00 635.00
IUUC-Vpa-130579 Vicugna pacos 64.33 0.00e+00 711.00
IUUC-Vvi-131127 Vitis vinifera 86.47 0.00e+00 953.00
IUUC-Xtr-132950 Xenopus tropicalis 60.35 0.00e+00 658.00
IUUC-Xma-133537 Xiphophorus maculatus 63.74 0.00e+00 712.00
Created Date 25-Jun-2017

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