iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-05	26.6	183	206

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 7    tclaf.sdtllvsGsdDgtikvWD 29
           +++++ s t +v+G++   +++WD
   Q: 183  RAVKWaSPTEFVTGGYGFGLQLWD 206
           5789984499************** PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MEMMQDSFQV HRIPQSKYVD GVRWLPQASA LNRFFATASY DADCDSSSIE IQSLDPNPRG 60
NHNTNPLIES LSSWTSPSRV SSLEVAGNGG GGGSFKPMVS AATSSGSLHV LMIDLVEGAA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTAATTTTTC CCACCATTGT TCTCGTTTAG CTCGGCTAAA ACCCTAGAAA ACCTCTGGAG 60
CTATGGAGAT GATGCAGGAT TCGTTCCAAG TCCATAGGAT TCCACAATCG AAGTATGTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0509--mRNA transport
KW-0906--Nuclear pore complex
KW-0539--Nucleus
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0811--Translocation
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom

Gene Ontology

GO:0009507--C:chloroplast
GO:0005635--C:nuclear envelope
GO:0031080--C:nuclear pore outer ring
GO:0051028--P:mRNA transport
GO:0015031--P:protein transport

KEGG

ath:AT4G30840

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001593	Ailuropoda melanoleuca	30.95	2.00e-14	72.40
IUUC-Atr-002526	Amborella trichopoda	52.38	2.00e-96	345.00
IUUC-Apl-003533	Anas platyrhynchos	29.76	3.00e-13	68.60
IUUC-Aca-004965	Anolis carolinensis	31.36	1.00e-13	69.70
IUUC-Aly-006431	Arabidopsis lyrata	96.41	0.00e+00	701.00
IUUC-Ame-011694	Astyanax mexicanus	28.57	6.00e-11	60.80
IUUC-Bta-013161	Bos taurus	29.24	6.00e-13	67.80
IUUC-Bdi-014758	Brachypodium distachyon	47.92	2.00e-81	295.00
IUUC-Bol-016489	Brassica oleracea	86.26	1.00e-149	523.00
IUUC-Bra-017838	Brassica rapa	87.47	2.00e-163	567.00
IUUC-Cja-020000	Callithrix jacchus	35.21	9.00e-05	40.40
IUUC-Cfa-021112	Canis familiaris	30.95	3.00e-14	72.00
IUUC-Cpo-022095	Cavia porcellus	30.95	2.00e-14	72.40
IUUC-Cre-022610	Chlamydomonas reinhardtii	33.33	7.00e-08	51.20
IUUC-Csa-023460	Chlorocebus sabaeus	30.95	3.00e-14	72.40
IUUC-Cho-024279	Choloepus hoffmanni	30.36	5.00e-14	70.90
IUUC-Cin-025360	Ciona intestinalis	25.73	1.00e-12	66.60
IUUC-Csv-026301	Ciona savignyi	28.24	2.00e-12	65.90
IUUC-Dre-028097	Danio rerio	28.57	7.00e-12	64.30
IUUC-Dno-029131	Dasypus novemcinctus	30.36	3.00e-14	72.00
IUUC-Dme-031834	Drosophila melanogaster	22.87	3.00e-08	52.00
IUUC-Ete-032448	Echinops telfairi	30.36	4.00e-13	68.60
IUUC-Eca-034409	Equus caballus	30.36	7.00e-14	70.90
IUUC-Eeu-035343	Erinaceus europaeus	28.03	3.00e-08	52.40
IUUC-Fca-036177	Felis catus	30.95	3.00e-14	72.40
IUUC-Fal-037657	Ficedula albicollis	29.17	2.00e-13	69.70
IUUC-Gmo-038946	Gadus morhua	26.19	1.00e-09	56.60
IUUC-Gga-041070	Gallus gallus	29.24	5.00e-13	68.20
IUUC-Gac-042442	Gasterosteus aculeatus	29.76	7.00e-12	64.30
IUUC-Gma-043812	Glycine max	59.15	2.00e-107	381.00
IUUC-Ggo-045223	Gorilla gorilla	30.36	7.00e-14	70.90
IUUC-Hsa-045956	Homo sapiens	30.36	8.00e-14	70.90
IUUC-Itr-048116	Ictidomys tridecemlineatus	29.76	1.00e-14	73.60
IUUC-Lch-050035	Latimeria chalumnae	29.59	9.00e-13	67.00
IUUC-Laf-053404	Loxodonta africana	29.76	3.00e-14	72.00
IUUC-Mcc-055813	Macaca mulatta	30.36	8.00e-14	70.90
IUUC-Meu-056388	Macropus eugenii	25.43	2.00e-08	52.80
IUUC-Mga-060193	Meleagris gallopavo	30.41	6.00e-14	71.20
IUUC-Mmr-060818	Microcebus murinus	30.36	3.00e-13	68.60
IUUC-Mdo-062822	Monodelphis domestica	28.93	3.00e-14	72.00
IUUC-Mmu-064182	Mus musculus	30.36	5.00e-14	71.20
IUUC-Mac-065317	Musa acuminata	53.58	1.00e-72	265.00
IUUC-Mpu-066865	Mustela putorius furo	30.95	2.00e-14	72.40
IUUC-Mlu-067329	Myotis lucifugus	30.95	4.00e-14	71.60
IUUC-Nle-069093	Nomascus leucogenys	30.36	6.00e-14	70.90
IUUC-Opr-070481	Ochotona princeps	30.36	6.00e-14	71.20
IUUC-Ont-072445	Oreochromis niloticus	29.76	5.00e-12	64.70
IUUC-Oan-073029	Ornithorhynchus anatinus	29.17	3.00e-13	68.90
IUUC-Ocu-074275	Oryctolagus cuniculus	30.36	7.00e-14	70.90
IUUC-Ola-086862	Oryzias latipes	29.76	4.00e-10	58.20
IUUC-Oga-088952	Otolemur garnettii	30.36	7.00e-14	70.90
IUUC-Oar-089300	Ovis aries	29.76	1.00e-13	70.10
IUUC-Ptr-091389	Pan troglodytes	30.36	8.00e-14	70.90
IUUC-Pan-092174	Papio anubis	30.36	7.00e-14	70.90
IUUC-Psi-093326	Pelodiscus sinensis	30.77	4.00e-14	71.60
IUUC-Pfo-096331	Poecilia formosa	28.57	2.00e-12	65.90
IUUC-Pab-098306	Pongo abelii	30.36	7.00e-14	71.20
IUUC-Pop-099166	Populus trichocarpa	58.17	2.00e-105	375.00
IUUC-Ppe-101380	Prunus persica	59.27	6.00e-118	416.00
IUUC-Pva-102578	Pteropus vampyrus	30.36	3.00e-14	72.40
IUUC-Rno-105146	Rattus norvegicus	30.36	5.00e-14	71.20
IUUC-Sha-107640	Sarcophilus harrisii	27.54	1.00e-14	73.20
IUUC-Sly-111767	Solanum lycopersicum	59.00	2.00e-110	391.00
IUUC-Stu-112515	Solanum tuberosum	59.72	3.00e-112	397.00
IUUC-Sbi-113809	Sorghum bicolor	59.32	3.00e-68	251.00
IUUC-Ssc-116129	Sus scrofa	30.36	9.00e-14	70.50
IUUC-Tgu-117456	Taeniopygia guttata	33.80	3.00e-04	37.70
IUUC-Tru-117630	Takifugu rubripes	28.57	6.00e-12	63.50
IUUC-Tsy-119331	Tarsius syrichta	30.95	5.00e-14	71.60
IUUC-Tni-120077	Tetraodon nigroviridis	27.38	1.00e-08	53.50
IUUC-Tca-121814	Theobroma cacao	62.71	3.00e-125	440.00
IUUC-Tae-123605	Triticum aestivum	48.76	4.00e-83	300.00
IUUC-Tbe-127359	Tupaia belangeri	32.50	5.00e-11	61.60
IUUC-Ttr-128461	Tursiops truncatus	30.36	2.00e-13	69.70
IUUC-Vpa-130162	Vicugna pacos	30.36	1.00e-13	70.50
IUUC-Vvi-131114	Vitis vinifera	58.61	4.00e-115	407.00
IUUC-Xtr-132446	Xenopus tropicalis	28.40	7.00e-13	67.40

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence