iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Cel-018624

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RiNg Finger protein

Genbank Nucleotide ID

BX284601

Gene Name

rnf-1; C06A5.9; CELE_C06A5.9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
WBGene00004380	C06A5.9	C06A5.9

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
IID	iRefIndex	PINA	Mentha
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	15530417

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	6.60e-07	30.1	22	68

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg...plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C +C+++f +     ++l CgH+f+++C+ ++  +++  s++  CP+Cr
   Q: 22   CQVCYQPFNETtklARSLHCGHTFCTECIRNV--QNYGNSPHLECPTCR 68
           99******77622244577**********777..55589*********8 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MSEKNTENPE ILSTVLAGYC QCQVCYQPFN ETTKLARSLH CGHTFCTECI RNVQNYGNSP 60
HLECPTCRAE TKSNIENVAP NFSIMELARN FGLLGPPVDA PRTSSSCCSN KTNRDEMIDN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAATTCCAGC TTTCTTTTTG TTTCAGAATT TCTAGGTATT TATCTCCGTG AAAATGAGCG 60
GTAAGATTGA CAATCTCGAG TTTGTATTAA AATTTATTAA ATTTCATTTC AGAAAAAAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR027370--Znf-RING_LisH
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF13445--zf-RING_UBOX

SMART

SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG

cel:CELE_C06A5.9

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cfa-020515	Canis familiaris	33.71	2.00e-10	58.20
IUUC-Cpo-022299	Cavia porcellus	37.29	4.00e-08	49.70
IUUC-Cgl-026549	Colletotrichum gloeosporioides	24.59	2.00e-06	44.30
IUUC-Dre-027688	Danio rerio	39.62	1.00e-07	48.10
IUUC-Gmo-038665	Gadus morhua	43.59	4.00e-06	42.40
IUUC-Rno-105774	Rattus norvegicus	36.59	2.00e-09	54.70

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence