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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-105329
UUCD1 version UUC-RaN-00368
Ensembl Protein ID ENSRNOP00000073708.1
UniProt Accession A0A0G2K679; A0A0G2K679_RAT
Genbank Protein ID ENSRNOP00000073708
Protein Name General transcription factor IIIC subunit 2
Genbank Nucleotide ID AABR07063281
Gene Name Gtf3c2
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000056904.1 ENSRNOT00000077481.1 ENSRNOP00000070546.1
ENSRNOG00000056904.1 ENSRNOT00000079292.1 ENSRNOP00000073708.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFACRAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 5.40e-11 42.7 651 683
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlr 31
           H   v+ +++   ++++lvs++ D +ik WDlr
   Q: 651  HDQAVRTIQWckaNSHFLVSAGSDRKIKFWDLR 683
           8999********8669***************97 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MDTCGVGYVA LGEADPVGSM IVVDSPGQEE LNQLDVKASS ETSSVEASIE MSLPPPLPGF 60
EDSSDKRRLP PDQESLTRLE QQDLSSEMAK VSNPRASKPS GRRGGRTPRG AKRPQQRKPP 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105329|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGGAAGCCAC GCCACAGCTT GAGGGAGTCG GAGGGCTCAG CGCTACACCG CGCCGCGCTG 60
CATTATGGAA CACAGAGTTT AATAGAAAGC TCGGCAGGGA ACGCATTCCA GACCAAGATT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105329|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat
Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0000127--C:transcription factor TFIIIC complex
GO:0003677--F:DNA binding
GO:0006383--P:transcription from RNA polymerase III promoter
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000091 Aegilops tauschii 30.15 5.00e-11 63.50
IUUC-Aml-001488 Ailuropoda melanoleuca 89.84 0.00e+00 1225.00
IUUC-Apl-003185 Anas platyrhynchos 63.00 0.00e+00 748.00
IUUC-Aca-005245 Anolis carolinensis 59.55 0.00e+00 714.00
IUUC-Ath-006785 Arabidopsis thaliana 23.12 2.00e-05 44.70
IUUC-Ame-010654 Astyanax mexicanus 42.69 2.00e-144 506.00
IUUC-Bta-012551 Bos taurus 78.83 0.00e+00 1296.00
IUUC-Bdi-014228 Brachypodium distachyon 21.76 7.00e-13 70.10
IUUC-Bol-015619 Brassica oleracea 26.86 3.00e-06 47.80
IUUC-Bra-017820 Brassica rapa 26.29 2.00e-06 48.10
IUUC-Cja-019727 Callithrix jacchus 81.66 0.00e+00 1369.00
IUUC-Cfa-020469 Canis familiaris 89.99 0.00e+00 1222.00
IUUC-Cpo-021854 Cavia porcellus 84.37 0.00e+00 1470.00
IUUC-Csa-023726 Chlorocebus sabaeus 81.66 0.00e+00 1365.00
IUUC-Cho-024296 Choloepus hoffmanni 90.13 0.00e+00 718.00
IUUC-Dre-028735 Danio rerio 42.95 4.00e-149 522.00
IUUC-Dno-028895 Dasypus novemcinctus 80.69 0.00e+00 1300.00
IUUC-Dor-030617 Dipodomys ordii 92.33 0.00e+00 1164.00
IUUC-Eca-033420 Equus caballus 89.28 0.00e+00 1177.00
IUUC-Eeu-035060 Erinaceus europaeus 70.85 0.00e+00 1147.00
IUUC-Fca-035603 Felis catus 81.11 0.00e+00 1344.00
IUUC-Fal-037637 Ficedula albicollis 62.33 0.00e+00 797.00
IUUC-Gga-040991 Gallus gallus 63.34 0.00e+00 778.00
IUUC-Ggo-045595 Gorilla gorilla 89.42 0.00e+00 1204.00
IUUC-Hsa-046196 Homo sapiens 81.87 0.00e+00 1385.00
IUUC-Hvu-047758 Hordeum vulgare 25.75 8.00e-11 63.20
IUUC-Itr-048222 Ictidomys tridecemlineatus 84.21 0.00e+00 1432.00
IUUC-Lch-050384 Latimeria chalumnae 52.04 4.00e-146 511.00
IUUC-Lpe-050995 Leersia perrieri 22.16 1.00e-12 68.90
IUUC-Loc-052778 Lepisosteus oculatus 52.84 0.00e+00 695.00
IUUC-Laf-054474 Loxodonta africana 80.32 0.00e+00 1183.00
IUUC-Mcc-055795 Macaca mulatta 89.42 0.00e+00 1210.00
IUUC-Mga-059757 Meleagris gallopavo 79.00 1.00e-100 358.00
IUUC-Mmr-061702 Microcebus murinus 89.15 0.00e+00 1070.00
IUUC-Mdo-063012 Monodelphis domestica 77.17 0.00e+00 1010.00
IUUC-Mmu-063858 Mus musculus 96.43 0.00e+00 1652.00
IUUC-Mpu-066147 Mustela putorius furo 83.24 0.00e+00 1093.00
IUUC-Mlu-067530 Myotis lucifugus 88.43 0.00e+00 1165.00
IUUC-Nle-069278 Nomascus leucogenys 81.66 0.00e+00 1363.00
IUUC-Opr-070222 Ochotona princeps 90.42 0.00e+00 1126.00
IUUC-Ont-071367 Oreochromis niloticus 38.41 7.00e-125 441.00
IUUC-Oan-073357 Ornithorhynchus anatinus 77.89 0.00e+00 722.00
IUUC-Ocu-074887 Oryctolagus cuniculus 79.56 0.00e+00 1268.00
IUUC-Obr-076376 Oryza brachyantha 23.78 2.00e-12 68.20
IUUC-Ogl-077258 Oryza glaberrima 29.73 6.00e-10 60.10
IUUC-Ogu-078002 Oryza glumaepatula 29.73 7.00e-10 59.30
IUUC-Oin-079689 Oryza indica 29.73 7.00e-10 60.10
IUUC-Olo-080486 Oryza longistaminata 31.87 1.00e-07 52.00
IUUC-Oni-082369 Oryza nivara 29.73 8.00e-10 59.70
IUUC-Opu-083230 Oryza punctata 20.73 7.00e-11 63.50
IUUC-Osa-085403 Oryza sativa 29.73 5.00e-10 60.10
IUUC-Ola-087512 Oryzias latipes 40.06 2.00e-72 265.00
IUUC-Oga-088051 Otolemur garnettii 78.62 0.00e+00 1260.00
IUUC-Oar-090076 Ovis aries 79.14 0.00e+00 1316.00
IUUC-Ptr-091503 Pan troglodytes 80.19 0.00e+00 1182.00
IUUC-Pan-092123 Papio anubis 81.76 0.00e+00 1367.00
IUUC-Psi-094020 Pelodiscus sinensis 65.96 0.00e+00 838.00
IUUC-Pma-094395 Petromyzon marinus 43.79 4.00e-83 301.00
IUUC-Ppa-095644 Physcomitrella patens 26.85 7.00e-11 61.60
IUUC-Pfo-097023 Poecilia formosa 39.31 1.00e-123 437.00
IUUC-Pab-097532 Pongo abelii 81.66 0.00e+00 1377.00
IUUC-Pop-099342 Populus trichocarpa 20.32 2.00e-08 54.70
IUUC-Pca-100255 Procavia capensis 90.10 0.00e+00 729.00
IUUC-Ppe-101268 Prunus persica 27.83 1.00e-07 52.80
IUUC-Pva-102403 Pteropus vampyrus 89.84 0.00e+00 1181.00
IUUC-Sha-106857 Sarcophilus harrisii 66.67 0.00e+00 1013.00
IUUC-Sit-110532 Setaria italica 30.71 1.00e-11 66.20
IUUC-Sly-110922 Solanum lycopersicum 23.60 1.00e-09 58.90
IUUC-Sar-113690 Sorex araneus 82.52 1.00e-127 450.00
IUUC-Sbi-114680 Sorghum bicolor 32.28 2.00e-12 68.60
IUUC-Tgu-117058 Taeniopygia guttata 68.73 4.00e-143 500.00
IUUC-Tru-118675 Takifugu rubripes 41.26 5.00e-137 481.00
IUUC-Tsy-119606 Tarsius syrichta 78.45 0.00e+00 670.00
IUUC-Tni-120125 Tetraodon nigroviridis 40.27 2.00e-82 298.00
IUUC-Tae-125287 Triticum aestivum 22.49 2.00e-13 71.60
IUUC-Tur-126862 Triticum urartu 23.24 1.00e-12 69.30
IUUC-Tbe-127727 Tupaia belangeri 75.49 0.00e+00 1094.00
IUUC-Ttr-128425 Tursiops truncatus 89.45 0.00e+00 920.00
IUUC-Vpa-130050 Vicugna pacos 84.49 0.00e+00 1110.00
IUUC-Vvi-131706 Vitis vinifera 26.96 2.00e-08 55.10
IUUC-Xtr-132178 Xenopus tropicalis 46.21 0.00e+00 659.00
Created Date 25-Jun-2017

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