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Tag Content
iUUCD ID IUUC-Olu-087655
Ensembl Protein ID ABO93780
UniProt Accession A4RR16; A4RR16_OSTLU
Genbank Protein ID ABO93780.1
Protein Name Coatomer subunit beta'
Genbank Nucleotide ID CP000581
Gene Name OSTLU_48514
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
OSTLU_48514 ABO93780 ABO93780
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 3.40e-33 110.9 183 224
UBD/Beta-Prp 1.20e-70 236.6 14 301
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l+sG+dD+  k+WD+ t  ++++
   Q: 183  GHEKGVNCVDYfagGDrPYLISGADDKLAKIWDYQTKSCVQT 224
           8********966*9888*******************999986 PP
   

   UBD/Beta-Prp
   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdkl 109
           ++++++ v ++p +++++t  ++g + +wd++t  l++s++  e +v++ k++ ++++++tg++D++++v++++t++ v+ +++h+d+++s++++p++ ++
   Q: 14   RSDRVKGVEIHPTEPWILTNLYSGNVAIWDYETNALVKSFEVTELPVRTSKWIARKQWIATGADDMFLRVYNYNTSELVVGFEAHSDYIRSIAVHPTQPYV 114
           5788999********************************************************************************************** PP
   S: 110  vsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklw 207
           v+ s+d  i++wd+e ++    +++gh++ v++vv++p++ n ++s+slDrt+++W++ +  +  tl+g h++ v++++     ++++l+sg++d+  k+w
   Q: 115  VTCSDDMLIKLWDWERQWDCAMVFEGHSHYVMHVVFNPKDtNTFASASLDRTIKVWNVTSPVCNFTLEG-HEKGVNCVDyfAGGDRPYLISGADDKLAKIW 214
           ******************9988**********************************************9.*********6445556*************** PP
   S: 208  dlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkk 296
           d+qt++cv+tl+gh  nv+ v f+p+   +++gs+Dg++riW   +  l +tl++  ++v+++ +  +++++ v+ + d    ++k  +
   Q: 215  DYQTKSCVQTLEGHAHNVSAVSFHPELPVIITGSEDGTLRIWHQNTYRLENTLNYGLERVWAIGC--LKGSNSVAIGYDEGTVMFKIGR 301
           ******************************************99*********************..6666666666666677777655 PP
   
Organism Ostreococcus lucimarinus
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Protein Sequence
(Fasta)
MPMRLDIKRK LVQRSDRVKG VEIHPTEPWI LTNLYSGNVA IWDYETNALV KSFEVTELPV 60
RTSKWIARKQ WIATGADDMF LRVYNYNTSE LVVGFEAHSD YIRSIAVHPT QPYVVTCSDD 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Olu-087655|E3,WD_repeat;UBD,Beta-Prp|Ostreococcus lucimarinus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGCCGATGC GGTTGGACAT CAAGCGCAAG CTCGTGCAGC GGAGCGACCG GGTGAAGGGG 60
GTGGAGATAC ACCCCACGGA ACCGTGGATA CTGACGAATC TGTACTCGGG GAACGTGGCG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Olu-087655|E3,WD_repeat;UBD,Beta-Prp|Ostreococcus lucimarinus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport
KEGG olu:OSTLU_48514
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000222 Aegilops tauschii 66.43 0.00e+00 815.00
IUUC-Aml-002154 Ailuropoda melanoleuca 59.75 0.00e+00 1049.00
IUUC-Atr-003090 Amborella trichopoda 63.33 0.00e+00 1089.00
IUUC-Apl-003976 Anas platyrhynchos 59.03 0.00e+00 1053.00
IUUC-Aca-004301 Anolis carolinensis 59.32 0.00e+00 1060.00
IUUC-Aly-006508 Arabidopsis lyrata 63.97 0.00e+00 1132.00
IUUC-Ath-007635 Arabidopsis thaliana 63.38 0.00e+00 1128.00
IUUC-Ago-007914 Ashbya gossypii 43.89 0.00e+00 708.00
IUUC-Acl-008237 Aspergillus clavatus 53.21 0.00e+00 898.00
IUUC-Afl-008535 Aspergillus flavus 49.94 0.00e+00 841.00
IUUC-Afu-008845 Aspergillus fumigatus 53.11 0.00e+00 889.00
IUUC-Ani-009135 Aspergillus nidulans 54.45 0.00e+00 873.00
IUUC-Ang-009654 Aspergillus niger 57.21 0.00e+00 796.00
IUUC-Aor-009939 Aspergillus oryzae 50.86 0.00e+00 902.00
IUUC-Ate-010355 Aspergillus terreus 52.69 0.00e+00 873.00
IUUC-Ame-010922 Astyanax mexicanus 54.12 0.00e+00 900.00
IUUC-Bgr-012249 Blumeria graminis 51.84 0.00e+00 865.00
IUUC-Bta-013579 Bos taurus 58.88 0.00e+00 911.00
IUUC-Bci-013866 Botrytis cinerea 53.44 0.00e+00 856.00
IUUC-Bdi-015046 Brachypodium distachyon 64.77 0.00e+00 1114.00
IUUC-Bol-016271 Brassica oleracea 65.54 0.00e+00 1142.00
IUUC-Bra-017758 Brassica rapa 65.38 0.00e+00 1134.00
IUUC-Cel-018387 Caenorhabditis elegans 54.63 0.00e+00 959.00
IUUC-Cja-019145 Callithrix jacchus 59.80 0.00e+00 1051.00
IUUC-Cfa-020564 Canis familiaris 59.80 0.00e+00 1051.00
IUUC-Cpo-022201 Cavia porcellus 59.75 0.00e+00 1048.00
IUUC-Cre-022938 Chlamydomonas reinhardtii 63.44 0.00e+00 1049.00
IUUC-Csa-023383 Chlorocebus sabaeus 64.50 0.00e+00 809.00
IUUC-Cho-024454 Choloepus hoffmanni 56.19 0.00e+00 875.00
IUUC-Cin-025681 Ciona intestinalis 55.02 0.00e+00 964.00
IUUC-Csv-026012 Ciona savignyi 57.18 0.00e+00 939.00
IUUC-Cgl-026649 Colletotrichum gloeosporioides 49.88 0.00e+00 781.00
IUUC-Cne-026986 Cryptococcus neoformans 49.82 0.00e+00 832.00
IUUC-Cme-027219 Cyanidioschyzon merolae 47.33 0.00e+00 852.00
IUUC-Dre-027846 Danio rerio 59.39 0.00e+00 1053.00
IUUC-Dor-030462 Dipodomys ordii 56.31 0.00e+00 788.00
IUUC-Dse-031268 Dothistroma septosporum 51.87 0.00e+00 878.00
IUUC-Dme-031791 Drosophila melanogaster 55.10 0.00e+00 969.00
IUUC-Ete-033166 Echinops telfairi 57.78 0.00e+00 682.00
IUUC-Eca-034180 Equus caballus 57.95 0.00e+00 1007.00
IUUC-Eeu-035086 Erinaceus europaeus 46.84 4.00e-116 410.00
IUUC-Fca-036265 Felis catus 59.80 0.00e+00 1051.00
IUUC-Fal-037202 Ficedula albicollis 58.59 0.00e+00 1003.00
IUUC-Fox-037711 Fusarium oxysporum 53.50 0.00e+00 811.00
IUUC-Fso-038268 Fusarium solani 52.25 0.00e+00 807.00
IUUC-Gmo-039046 Gadus morhua 58.52 0.00e+00 1038.00
IUUC-Ggr-039863 Gaeumannomyces graminis 53.26 0.00e+00 850.00
IUUC-Gga-041112 Gallus gallus 59.08 0.00e+00 1053.00
IUUC-Gac-041733 Gasterosteus aculeatus 58.65 0.00e+00 1017.00
IUUC-Gma-044333 Glycine max 66.14 0.00e+00 1151.00
IUUC-Ggo-044984 Gorilla gorilla 59.80 0.00e+00 1051.00
IUUC-Hsa-046698 Homo sapiens 59.68 0.00e+00 1050.00
IUUC-Hvu-047669 Hordeum vulgare 73.73 6.00e-170 587.00
IUUC-Itr-048212 Ictidomys tridecemlineatus 59.75 0.00e+00 1047.00
IUUC-Kpa-049265 Komagataella pastoris 50.75 0.00e+00 829.00
IUUC-Lch-050473 Latimeria chalumnae 59.09 0.00e+00 1046.00
IUUC-Lpe-051579 Leersia perrieri 63.27 0.00e+00 1118.00
IUUC-Loc-052675 Lepisosteus oculatus 57.01 0.00e+00 1058.00
IUUC-Lma-053218 Leptosphaeria maculans 51.29 0.00e+00 843.00
IUUC-Laf-053757 Loxodonta africana 59.48 0.00e+00 1041.00
IUUC-Mcc-054859 Macaca mulatta 59.80 0.00e+00 1051.00
IUUC-Meu-056174 Macropus eugenii 47.49 9.00e-97 345.00
IUUC-Mor-057264 Magnaporthe oryzae 54.52 0.00e+00 833.00
IUUC-Mpo-057538 Magnaporthe poae 53.26 0.00e+00 861.00
IUUC-Mtr-058618 Medicago truncatula 65.18 0.00e+00 1107.00
IUUC-Mla-058937 Melampsora laricipopulina 53.11 0.00e+00 861.00
IUUC-Mga-059875 Meleagris gallopavo 59.06 0.00e+00 1050.00
IUUC-Mvi-060240 Microbotryum violaceum 51.84 0.00e+00 861.00
IUUC-Mmr-061261 Microcebus murinus 59.80 0.00e+00 1051.00
IUUC-Mdo-062076 Monodelphis domestica 59.08 0.00e+00 1052.00
IUUC-Mmu-063324 Mus musculus 59.68 0.00e+00 1050.00
IUUC-Mac-064636 Musa acuminata 64.47 0.00e+00 1120.00
IUUC-Mpu-065961 Mustela putorius furo 59.80 0.00e+00 1051.00
IUUC-Mlu-067059 Myotis lucifugus 59.06 0.00e+00 1022.00
IUUC-Nfi-068277 Neosartorya fischeri 52.93 0.00e+00 881.00
IUUC-Ncr-068659 Neurospora crassa 51.71 0.00e+00 861.00
IUUC-Nle-069034 Nomascus leucogenys 59.80 0.00e+00 1051.00
IUUC-Opr-070334 Ochotona princeps 59.86 0.00e+00 948.00
IUUC-Ont-071563 Oreochromis niloticus 59.58 0.00e+00 1048.00
IUUC-Oan-073416 Ornithorhynchus anatinus 59.17 0.00e+00 989.00
IUUC-Ocu-074522 Oryctolagus cuniculus 59.93 0.00e+00 1050.00
IUUC-Oba-075760 Oryza barthii 63.48 0.00e+00 1103.00
IUUC-Obr-076163 Oryza brachyantha 62.61 0.00e+00 1135.00
IUUC-Ogl-077450 Oryza glaberrima 64.09 0.00e+00 1124.00
IUUC-Ogu-078994 Oryza glumaepatula 63.48 0.00e+00 1102.00
IUUC-Oin-079856 Oryza indica 62.14 0.00e+00 1113.00
IUUC-Olo-080731 Oryza longistaminata 62.65 0.00e+00 1086.00
IUUC-Ome-081762 Oryza meridionalis 59.15 0.00e+00 1025.00
IUUC-Oni-082324 Oryza nivara 63.48 0.00e+00 1102.00
IUUC-Opu-083400 Oryza punctata 60.31 0.00e+00 1098.00
IUUC-Oru-084829 Oryza rufipogon 63.48 0.00e+00 1102.00
IUUC-Osa-086026 Oryza sativa 64.33 0.00e+00 1129.00
IUUC-Ola-087245 Oryzias latipes 59.29 0.00e+00 1041.00
IUUC-Oga-088163 Otolemur garnettii 57.20 0.00e+00 993.00
IUUC-Oar-089842 Ovis aries 59.68 0.00e+00 1049.00
IUUC-Ptr-090501 Pan troglodytes 59.80 0.00e+00 1051.00
IUUC-Pan-092011 Papio anubis 59.80 0.00e+00 1051.00
IUUC-Psi-093308 Pelodiscus sinensis 59.32 0.00e+00 1053.00
IUUC-Pma-094695 Petromyzon marinus 55.80 0.00e+00 917.00
IUUC-Pno-094785 Phaeosphaeria nodorum 55.52 1.00e-102 365.00
IUUC-Ppa-095911 Physcomitrella patens 65.45 0.00e+00 1133.00
IUUC-Pfo-096587 Poecilia formosa 59.58 0.00e+00 1049.00
IUUC-Pab-097926 Pongo abelii 58.95 0.00e+00 992.00
IUUC-Pop-099634 Populus trichocarpa 63.89 0.00e+00 1139.00
IUUC-Pca-100965 Procavia capensis 58.64 0.00e+00 1011.00
IUUC-Ppe-101470 Prunus persica 64.27 0.00e+00 1147.00
IUUC-Pva-102451 Pteropus vampyrus 56.31 0.00e+00 794.00
IUUC-Pgr-103590 Puccinia graminis 53.07 0.00e+00 878.00
IUUC-Ptt-103868 Puccinia triticina 51.75 0.00e+00 886.00
IUUC-Pte-104274 Pyrenophora teres 52.93 0.00e+00 888.00
IUUC-Pyt-104794 Pyrenophora triticirepentis 50.18 0.00e+00 833.00
IUUC-Rno-105979 Rattus norvegicus 50.82 0.00e+00 769.00
IUUC-Sce-106269 Saccharomyces cerevisiae 47.74 0.00e+00 750.00
IUUC-Sha-106905 Sarcophilus harrisii 59.08 0.00e+00 1052.00
IUUC-Sja-107838 Schizosaccharomyces japonicus 45.96 0.00e+00 740.00
IUUC-Spo-108299 Schizosaccharomyces pombe 45.80 0.00e+00 763.00
IUUC-Smo-108695 Selaginella moellendorffii 64.94 0.00e+00 1101.00
IUUC-Sit-110239 Setaria italica 65.42 0.00e+00 1141.00
IUUC-Sly-111775 Solanum lycopersicum 62.26 0.00e+00 1139.00
IUUC-Stu-112906 Solanum tuberosum 63.15 0.00e+00 1028.00
IUUC-Sar-113472 Sorex araneus 55.83 0.00e+00 717.00
IUUC-Sbi-113886 Sorghum bicolor 66.71 0.00e+00 1132.00
IUUC-Sre-115040 Sporisorium reilianum 51.26 0.00e+00 875.00
IUUC-Ssc-115593 Sus scrofa 59.80 0.00e+00 1051.00
IUUC-Tgu-117239 Taeniopygia guttata 59.27 0.00e+00 1054.00
IUUC-Tru-118025 Takifugu rubripes 58.70 0.00e+00 1043.00
IUUC-Tsy-118824 Tarsius syrichta 55.33 0.00e+00 734.00
IUUC-Tni-120142 Tetraodon nigroviridis 59.41 0.00e+00 1038.00
IUUC-Tca-121613 Theobroma cacao 66.14 0.00e+00 1150.00
IUUC-Tre-122072 Trichoderma reesei 52.12 0.00e+00 854.00
IUUC-Tvi-122546 Trichoderma virens 52.42 0.00e+00 853.00
IUUC-Tae-125395 Triticum aestivum 63.10 0.00e+00 1135.00
IUUC-Tur-126283 Triticum urartu 56.15 0.00e+00 982.00
IUUC-Tme-127041 Tuber melanosporum 53.44 0.00e+00 883.00
IUUC-Tbe-127770 Tupaia belangeri 58.20 0.00e+00 835.00
IUUC-Ttr-129294 Tursiops truncatus 59.80 0.00e+00 1048.00
IUUC-Uma-129351 Ustilago maydis 49.76 0.00e+00 866.00
IUUC-Vda-129716 Verticillium dahliae 53.04 0.00e+00 896.00
IUUC-Vpa-130037 Vicugna pacos 47.93 1.00e-121 428.00
IUUC-Vvi-131689 Vitis vinifera 65.25 0.00e+00 1132.00
IUUC-Xtr-132633 Xenopus tropicalis 59.56 0.00e+00 1060.00
IUUC-Xma-133347 Xiphophorus maculatus 59.46 0.00e+00 1049.00
IUUC-Yli-134455 Yarrowia lipolytica 47.97 0.00e+00 754.00
IUUC-Zma-135867 Zea mays 63.74 0.00e+00 1140.00
Created Date 25-Jun-2017

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