iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099489

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM000346

Gene Name

POPTRDRAFT_805643; POPTR_0010s26190g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0010s26190	POPTR_0010s26190.1	POPTR_0010s26190.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.00e-38	128.9	141	179
UBD/Beta-Prp	3.00e-58	198.5	14	253

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+t+k+WDl+ g+ll+
   Q: 141  GHTRGVNAIRFtPDgRWVVSGGEDNTVKLWDLTAGKLLH 179
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsv 97
           +h+s ++c+k+  +++++l+tg++d+++ +w + +++++ slsgh++++ +v+f++++ + + g+  +t+k+wdl+  k+v+tl+gh ++ 
   Q: 14   AHSSSVNCLKIgRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTVKLWDLEEAKIVRTLTGHRSNC 104
           7999999****99*********************************************999999999************************ PP
   S: 98   lslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsf 188
            s++f+p g++++sGs d  +++wd++++ c++ t +gh++ vn +++ pdg+ +vsG+ D+tv+lWdl  gkll++++  h++++++++f
   Q: 105  ISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDF 193
           *********************************.********************************************98.********** PP
   S: 189  dsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW 249
           ++  + l++gs d+tvk+wdl+t e + +    t+ v+++ f +++  l++g  ++s++++
   Q: 194  HPHEFLLATGSADRTVKFWDLETFELIGSAGPETTGVRCLTFNSDGRTLLCGL-HESLKVF 253
           *******************************************9999999885.6666663 PP

Organism

Populus trichocarpa

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTKRAYKLQ EFVAHSSSVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLSGHTS 60
GIDSVSFDSS EVLVAAGAAS GTVKLWDLEE AKIVRTLTGH RSNCISVDFH PFGEFFASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACGCATCTCT CCTGTGAATG TGAAAGCGCC TCTTCTCCTT TCTCTATTTC TTGCCTCTGG 60
TTGCTACTCT AGGCTGAGTC CCACCCTCTC CTGTTACATT CCATCTCTGT GCGTGGCTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

pop:POPTR_0010s26190g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bgr-012225	Blumeria graminis	33.16	3.00e-29	123.00
IUUC-Cfa-020139	Canis familiaris	44.17	7.00e-94	337.00
IUUC-Cin-025156	Ciona intestinalis	47.16	5.00e-86	311.00
IUUC-Csv-025962	Ciona savignyi	49.32	6.00e-86	310.00
IUUC-Dse-031413	Dothistroma septosporum	32.92	4.00e-23	102.00
IUUC-Mpo-057381	Magnaporthe poae	35.42	2.00e-27	117.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence