iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111680

Ensembl Protein ID

Solyc01g104510.2.1

UniProt Accession

O22466; MSI1_SOLLC

Genbank Protein ID

AAB70241.1

Protein Name

WD-40 repeat-containing protein MSI1

Genbank Nucleotide ID

AF016845

Gene Name

MSI1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc01g104510.2	Solyc01g104510.2.1	Solyc01g104510.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-30	105.0	272	305

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrt 32
           H+++v+claf   +++ +++Gs D+t+k++Dlr+
   Q: 272  HQSEVNCLAFnpfNEWVVATGSTDKTVKLFDLRK 305
           9**********977799**************985 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MGKDEDEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD 60
YSVQKMILGT HTSENEPNYL MLAQVQLPLE DAENDARHYD DDRSEFGGFG CANGKVQIIQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAGAAAAA AAGAAAAAGA AAATTCACTG AAAAATACCG TTCCCTCCAA TTCTCTACAA 60
ACCCTCGTAA AAATCCCCAA ACTCCACAAA ACCCAAACCC TCACGCACTC AAAACAGAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

KEGG

sly:543534

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000757	Aegilops tauschii	77.25	0.00e+00	667.00
IUUC-Aml-001339	Ailuropoda melanoleuca	66.75	5.00e-162	563.00
IUUC-Atr-003075	Amborella trichopoda	88.42	0.00e+00	798.00
IUUC-Apl-003952	Anas platyrhynchos	67.49	3.00e-166	577.00
IUUC-Aca-004508	Anolis carolinensis	67.49	3.00e-166	577.00
IUUC-Aly-006342	Arabidopsis lyrata	92.09	0.00e+00	796.00
IUUC-Ath-006855	Arabidopsis thaliana	91.02	0.00e+00	798.00
IUUC-Acl-008163	Aspergillus clavatus	49.02	4.00e-115	407.00
IUUC-Afl-008645	Aspergillus flavus	49.28	3.00e-116	410.00
IUUC-Afu-009091	Aspergillus fumigatus	48.28	2.00e-112	398.00
IUUC-Ani-009478	Aspergillus nidulans	45.45	5.00e-97	347.00
IUUC-Ang-009707	Aspergillus niger	48.77	1.00e-112	399.00
IUUC-Aor-010028	Aspergillus oryzae	49.28	3.00e-116	410.00
IUUC-Ate-010416	Aspergillus terreus	49.26	4.00e-117	414.00
IUUC-Ame-010598	Astyanax mexicanus	66.75	7.00e-164	569.00
IUUC-Bgr-012001	Blumeria graminis	44.55	1.00e-96	346.00
IUUC-Bta-012851	Bos taurus	66.18	2.00e-166	578.00
IUUC-Bci-013815	Botrytis cinerea	46.52	2.00e-114	405.00
IUUC-Bdi-014926	Brachypodium distachyon	86.49	0.00e+00	760.00
IUUC-Bol-015856	Brassica oleracea	87.38	0.00e+00	775.00
IUUC-Bra-016725	Brassica rapa	80.82	0.00e+00	743.00
IUUC-Cel-018587	Caenorhabditis elegans	60.19	2.00e-144	504.00
IUUC-Cja-019884	Callithrix jacchus	66.18	2.00e-166	578.00
IUUC-Cfa-020343	Canis familiaris	66.18	2.00e-166	578.00
IUUC-Cpo-021591	Cavia porcellus	66.18	2.00e-166	578.00
IUUC-Cre-022563	Chlamydomonas reinhardtii	69.23	2.00e-175	607.00
IUUC-Csa-023738	Chlorocebus sabaeus	66.25	5.00e-162	563.00
IUUC-Cho-024506	Choloepus hoffmanni	65.94	5.00e-165	573.00
IUUC-Cin-025589	Ciona intestinalis	64.00	5.00e-164	570.00
IUUC-Csv-026216	Ciona savignyi	64.25	2.00e-162	564.00
IUUC-Cgl-026564	Colletotrichum gloeosporioides	46.28	6.00e-108	383.00
IUUC-Cne-026792	Cryptococcus neoformans	49.87	1.00e-123	435.00
IUUC-Cme-027307	Cyanidioschyzon merolae	50.35	2.00e-121	428.00
IUUC-Dre-028742	Danio rerio	65.22	8.00e-164	568.00
IUUC-Dno-029114	Dasypus novemcinctus	66.18	2.00e-166	578.00
IUUC-Dor-030733	Dipodomys ordii	56.82	8.00e-132	462.00
IUUC-Dse-031282	Dothistroma septosporum	44.56	2.00e-96	345.00
IUUC-Dme-032126	Drosophila melanogaster	66.25	4.00e-163	566.00
IUUC-Ete-032731	Echinops telfairi	66.18	2.00e-166	578.00
IUUC-Eca-033533	Equus caballus	66.25	2.00e-161	560.00
IUUC-Eeu-034644	Erinaceus europaeus	62.78	9.00e-80	289.00
IUUC-Fca-036202	Felis catus	66.18	2.00e-166	578.00
IUUC-Fal-037084	Ficedula albicollis	67.49	3.00e-166	577.00
IUUC-Fox-037974	Fusarium oxysporum	47.66	1.00e-114	405.00
IUUC-Fso-038246	Fusarium solani	46.92	1.00e-102	365.00
IUUC-Gmo-039214	Gadus morhua	65.54	9.00e-164	568.00
IUUC-Ggr-039741	Gaeumannomyces graminis	47.70	5.00e-108	383.00
IUUC-Gga-040396	Gallus gallus	66.18	2.00e-166	578.00
IUUC-Gac-041389	Gasterosteus aculeatus	66.83	1.00e-163	568.00
IUUC-Gma-042791	Glycine max	93.02	0.00e+00	791.00
IUUC-Ggo-045422	Gorilla gorilla	61.58	2.00e-147	514.00
IUUC-Hsa-045683	Homo sapiens	66.18	2.00e-166	578.00
IUUC-Hvu-047457	Hordeum vulgare	89.90	5.00e-107	379.00
IUUC-Itr-047950	Ictidomys tridecemlineatus	66.18	2.00e-166	578.00
IUUC-Kpa-049119	Komagataella pastoris	36.61	4.00e-72	264.00
IUUC-Lch-050545	Latimeria chalumnae	66.10	6.00e-165	572.00
IUUC-Lpe-051337	Leersia perrieri	87.07	0.00e+00	763.00
IUUC-Loc-052473	Lepisosteus oculatus	65.46	3.00e-165	573.00
IUUC-Lma-053275	Leptosphaeria maculans	42.76	3.00e-67	248.00
IUUC-Laf-054114	Loxodonta africana	66.18	2.00e-166	578.00
IUUC-Mcc-055648	Macaca mulatta	66.42	2.00e-166	577.00
IUUC-Meu-056490	Macropus eugenii	66.18	2.00e-166	578.00
IUUC-Mor-056947	Magnaporthe oryzae	48.31	5.00e-107	380.00
IUUC-Mpo-057602	Magnaporthe poae	48.31	2.00e-108	385.00
IUUC-Mtr-057853	Medicago truncatula	90.48	0.00e+00	776.00
IUUC-Mla-058884	Melampsora laricipopulina	50.86	1.00e-122	432.00
IUUC-Mga-059452	Meleagris gallopavo	67.49	2.00e-166	577.00
IUUC-Mvi-060450	Microbotryum violaceum	54.59	6.00e-127	446.00
IUUC-Mmr-061008	Microcebus murinus	66.25	8.00e-162	562.00
IUUC-Mdo-062817	Monodelphis domestica	67.25	9.00e-165	572.00
IUUC-Mmu-063282	Mus musculus	66.18	2.00e-166	578.00
IUUC-Mac-065480	Musa acuminata	88.89	0.00e+00	779.00
IUUC-Mpu-066529	Mustela putorius furo	65.70	3.00e-165	573.00
IUUC-Mlu-068072	Myotis lucifugus	66.18	2.00e-166	578.00
IUUC-Nfi-068374	Neosartorya fischeri	48.28	4.00e-110	390.00
IUUC-Ncr-068794	Neurospora crassa	45.59	4.00e-107	380.00
IUUC-Nle-069577	Nomascus leucogenys	66.18	2.00e-166	578.00
IUUC-Opr-070245	Ochotona princeps	54.11	7.00e-126	442.00
IUUC-Ont-071809	Oreochromis niloticus	66.75	5.00e-164	569.00
IUUC-Oan-072839	Ornithorhynchus anatinus	67.33	4.00e-165	573.00
IUUC-Ocu-074778	Oryctolagus cuniculus	66.25	4.00e-162	563.00
IUUC-Oba-075719	Oryza barthii	73.26	0.00e+00	657.00
IUUC-Obr-076859	Oryza brachyantha	87.35	0.00e+00	763.00
IUUC-Ogl-077920	Oryza glaberrima	87.56	0.00e+00	766.00
IUUC-Ogu-078048	Oryza glumaepatula	73.26	0.00e+00	653.00
IUUC-Oin-079960	Oryza indica	71.98	1.00e-177	615.00
IUUC-Olo-080553	Oryza longistaminata	70.31	0.00e+00	641.00
IUUC-Ome-081835	Oryza meridionalis	87.56	0.00e+00	771.00
IUUC-Oni-082494	Oryza nivara	73.02	0.00e+00	650.00
IUUC-Opu-083913	Oryza punctata	83.90	0.00e+00	719.00
IUUC-Oru-084666	Oryza rufipogon	87.56	0.00e+00	766.00
IUUC-Osa-085884	Oryza sativa	87.56	0.00e+00	766.00
IUUC-Ola-086664	Oryzias latipes	65.94	1.00e-164	571.00
IUUC-Olu-087579	Ostreococcus lucimarinus	66.67	3.00e-160	556.00
IUUC-Oga-088364	Otolemur garnettii	62.35	5.00e-152	530.00
IUUC-Oar-089652	Ovis aries	66.18	2.00e-166	578.00
IUUC-Ptr-091598	Pan troglodytes	66.25	1.00e-161	561.00
IUUC-Pan-092412	Papio anubis	66.25	5.00e-162	563.00
IUUC-Psi-093300	Pelodiscus sinensis	65.96	8.00e-152	529.00
IUUC-Pma-094307	Petromyzon marinus	64.83	1.00e-165	575.00
IUUC-Pno-095153	Phaeosphaeria nodorum	45.07	1.00e-101	362.00
IUUC-Ppa-095800	Physcomitrella patens	77.40	0.00e+00	678.00
IUUC-Pfo-097376	Poecilia formosa	66.58	2.00e-162	564.00
IUUC-Pab-097697	Pongo abelii	66.18	2.00e-166	578.00
IUUC-Pop-099709	Populus trichocarpa	93.13	0.00e+00	833.00
IUUC-Pca-100642	Procavia capensis	58.27	5.00e-139	486.00
IUUC-Ppe-101212	Prunus persica	95.48	0.00e+00	821.00
IUUC-Pva-102253	Pteropus vampyrus	66.18	2.00e-166	578.00
IUUC-Pgr-103441	Puccinia graminis	49.75	9.00e-118	416.00
IUUC-Pte-104332	Pyrenophora teres	44.78	6.00e-103	366.00
IUUC-Pyt-104516	Pyrenophora triticirepentis	44.78	6.00e-103	366.00
IUUC-Rno-105678	Rattus norvegicus	66.18	2.00e-166	578.00
IUUC-Sce-106364	Saccharomyces cerevisiae	35.97	4.00e-67	247.00
IUUC-Sha-106663	Sarcophilus harrisii	67.49	3.00e-166	577.00
IUUC-Sja-108001	Schizosaccharomyces japonicus	47.39	5.00e-106	377.00
IUUC-Spo-108145	Schizosaccharomyces pombe	47.24	7.00e-110	389.00
IUUC-Smo-109159	Selaginella moellendorffii	76.98	0.00e+00	675.00
IUUC-Sit-110144	Setaria italica	87.71	0.00e+00	731.00
IUUC-Stu-111931	Solanum tuberosum	99.76	0.00e+00	856.00
IUUC-Sar-113236	Sorex araneus	60.55	3.00e-139	487.00
IUUC-Sbi-114637	Sorghum bicolor	86.98	0.00e+00	754.00
IUUC-Sre-114980	Sporisorium reilianum	50.99	2.00e-129	454.00
IUUC-Ssc-116352	Sus scrofa	66.00	1.00e-161	561.00
IUUC-Tgu-116925	Taeniopygia guttata	67.25	8.00e-166	575.00
IUUC-Tru-117549	Takifugu rubripes	66.42	2.00e-161	560.00
IUUC-Tsy-118854	Tarsius syrichta	66.25	1.00e-161	561.00
IUUC-Tni-120398	Tetraodon nigroviridis	66.67	1.00e-163	568.00
IUUC-Tca-121841	Theobroma cacao	93.62	0.00e+00	816.00
IUUC-Tre-122190	Trichoderma reesei	48.33	1.00e-107	382.00
IUUC-Tvi-122304	Trichoderma virens	48.80	4.00e-115	407.00
IUUC-Tae-124648	Triticum aestivum	86.49	0.00e+00	731.00
IUUC-Tur-126850	Triticum urartu	84.21	1.00e-165	575.00
IUUC-Tme-126949	Tuber melanosporum	50.25	3.00e-119	421.00
IUUC-Tbe-128010	Tupaia belangeri	60.05	8.00e-139	486.00
IUUC-Ttr-128558	Tursiops truncatus	59.80	4.00e-140	490.00
IUUC-Uma-129424	Ustilago maydis	51.48	1.00e-131	461.00
IUUC-Vda-129873	Verticillium dahliae	45.82	7.00e-112	396.00
IUUC-Vpa-130079	Vicugna pacos	65.70	7.00e-165	572.00
IUUC-Vvi-131585	Vitis vinifera	94.56	0.00e+00	820.00
IUUC-Xtr-132005	Xenopus tropicalis	66.34	3.00e-164	570.00
IUUC-Xma-133066	Xiphophorus maculatus	66.75	5.00e-164	569.00
IUUC-Yli-134334	Yarrowia lipolytica	36.62	1.00e-78	286.00
IUUC-Zma-135873	Zea mays	87.71	0.00e+00	732.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence