iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-115711

Ensembl Protein ID

ENSSSCP00000024703.1

UniProt Accession

I3LKT8; I3LKT8_PIG

Genbank Protein ID

ENSSSCP00000024703

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

FP312679

Gene Name

RBBP4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000028423.1	ENSSSCT00000023350.1	ENSSSCP00000024703.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.20e-37	125.7	237	271

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           Ht++v+cl+f   s+ +l++Gs D+t+ +WDlr  
   Q: 237  HTAEVNCLSFnpySEFILATGSADKTVALWDLRNL 271
           **********96554568*************9875 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MTHALEWPSL TAQWLPDVTR PEGKDFSIHR LVLGTHTSDE QNHLVIASVQ LPNDDAQFDA 60
SHYDSEKGEF GGFGSVSGKI EIEIKINHEG EVNRARYMPQ NPCIIATKTP SSDVLVFDYT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGGCAAGCTG CTCCGCGCGT CTGGATAGGC TGCGATCGCG GCTTCCCCGC CCACACCGAC 60
GTTCGGCGCA CTCCGATTGG CCGATGTTGG CGCGAAGGTG CGCGAGTCGG CCCTCACGCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0033186--C:CAF-1 complex
GO:0005829--C:cytosol
GO:0035098--C:ESC/E(Z) complex
GO:0000790--C:nuclear chromatin
GO:0016581--C:NuRD complex
GO:0016589--C:NURF complex
GO:0008094--F:DNA-dependent ATPase activity
GO:0031492--F:nucleosomal DNA binding
GO:0000978--F:RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980--F:RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0043044--P:ATP-dependent chromatin remodeling
GO:0006335--P:DNA replication-dependent nucleosome assembly
GO:0006336--P:DNA replication-independent nucleosome assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001339	Ailuropoda melanoleuca	99.49	0.00e+00	795.00
IUUC-Apl-003952	Anas platyrhynchos	100.00	0.00e+00	806.00
IUUC-Aca-004508	Anolis carolinensis	99.74	0.00e+00	805.00
IUUC-Ame-010598	Astyanax mexicanus	96.92	0.00e+00	785.00
IUUC-Bta-012851	Bos taurus	100.00	0.00e+00	806.00
IUUC-Cja-019884	Callithrix jacchus	100.00	0.00e+00	806.00
IUUC-Cfa-020343	Canis familiaris	100.00	0.00e+00	806.00
IUUC-Cpo-021591	Cavia porcellus	100.00	0.00e+00	806.00
IUUC-Cho-024506	Choloepus hoffmanni	99.49	0.00e+00	798.00
IUUC-Dre-028742	Danio rerio	97.17	0.00e+00	786.00
IUUC-Dno-029114	Dasypus novemcinctus	100.00	0.00e+00	806.00
IUUC-Dse-031282	Dothistroma septosporum	46.70	4.00e-99	354.00
IUUC-Ete-032731	Echinops telfairi	100.00	0.00e+00	806.00
IUUC-Eca-033533	Equus caballus	98.46	0.00e+00	787.00
IUUC-Eeu-034644	Erinaceus europaeus	100.00	3.00e-130	457.00
IUUC-Fca-036202	Felis catus	100.00	0.00e+00	806.00
IUUC-Fal-037084	Ficedula albicollis	100.00	0.00e+00	806.00
IUUC-Fso-038246	Fusarium solani	48.32	8.00e-111	393.00
IUUC-Gmo-039214	Gadus morhua	97.16	0.00e+00	777.00
IUUC-Gga-040396	Gallus gallus	100.00	0.00e+00	806.00
IUUC-Gac-042477	Gasterosteus aculeatus	95.91	0.00e+00	778.00
IUUC-Ggo-045422	Gorilla gorilla	90.84	0.00e+00	709.00
IUUC-Hsa-045683	Homo sapiens	100.00	0.00e+00	806.00
IUUC-Hvu-047457	Hordeum vulgare	67.18	5.00e-76	276.00
IUUC-Itr-047950	Ictidomys tridecemlineatus	100.00	0.00e+00	806.00
IUUC-Loc-052473	Lepisosteus oculatus	97.69	0.00e+00	792.00
IUUC-Laf-054114	Loxodonta africana	100.00	0.00e+00	806.00
IUUC-Mcc-055648	Macaca mulatta	100.00	0.00e+00	806.00
IUUC-Meu-056490	Macropus eugenii	100.00	0.00e+00	806.00
IUUC-Mga-059452	Meleagris gallopavo	100.00	0.00e+00	806.00
IUUC-Mmu-063282	Mus musculus	100.00	0.00e+00	806.00
IUUC-Mpu-066529	Mustela putorius furo	99.23	0.00e+00	801.00
IUUC-Mlu-068072	Myotis lucifugus	100.00	0.00e+00	806.00
IUUC-Nle-069577	Nomascus leucogenys	100.00	0.00e+00	806.00
IUUC-Opr-070245	Ochotona princeps	83.08	1.00e-180	625.00
IUUC-Ont-071809	Oreochromis niloticus	96.66	0.00e+00	784.00
IUUC-Oan-072839	Ornithorhynchus anatinus	99.74	0.00e+00	801.00
IUUC-Ocu-073968	Oryctolagus cuniculus	100.00	0.00e+00	805.00
IUUC-Oin-079960	Oryza indica	56.27	3.00e-124	438.00
IUUC-Ola-086664	Oryzias latipes	96.67	0.00e+00	785.00
IUUC-Oga-088364	Otolemur garnettii	90.31	0.00e+00	719.00
IUUC-Oar-089652	Ovis aries	100.00	0.00e+00	806.00
IUUC-Psi-093300	Pelodiscus sinensis	100.00	0.00e+00	805.00
IUUC-Pfo-097376	Poecilia formosa	96.41	0.00e+00	780.00
IUUC-Pab-097697	Pongo abelii	100.00	0.00e+00	806.00
IUUC-Pva-102253	Pteropus vampyrus	100.00	0.00e+00	806.00
IUUC-Rno-105678	Rattus norvegicus	100.00	0.00e+00	806.00
IUUC-Sha-106663	Sarcophilus harrisii	100.00	0.00e+00	806.00
IUUC-Tgu-116925	Taeniopygia guttata	99.74	0.00e+00	805.00
IUUC-Tru-117549	Takifugu rubripes	96.16	0.00e+00	775.00
IUUC-Tni-120398	Tetraodon nigroviridis	96.16	0.00e+00	779.00
IUUC-Tur-126850	Triticum urartu	63.55	5.00e-117	414.00
IUUC-Tbe-127459	Tupaia belangeri	91.98	0.00e+00	653.00
IUUC-Vpa-130079	Vicugna pacos	99.74	0.00e+00	805.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence