iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cja-019308

UUCD1 version

UUC-CaJ-00937

Ensembl Protein ID

ENSCJAP00000011497.1

UniProt Accession

F7IKF4; F7IKF4_CALJA

Genbank Protein ID

JAB02109.1; JAB21951.1; JAB26571.1; JAB35850.1; JAB43952.1

Protein Name

U5 small nuclear ribonucleoprotein 40 kDa protein

Genbank Nucleotide ID

ACFV01135339; GAMS01001185; GAMR01007361; GAMQ01006001; GAMP01008803

Gene Name

SNRNP40

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCJAG00000006212.2	ENSCJAT00000012129.1	ENSCJAP00000011497.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.20e-46	154.2	150	184
UBD/Beta-Prp	1.40e-79	268.3	63	266

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
           gHt+ v+++     +  l+++GsdDgt+k+WD+r+
   Q: 150  GHTSFVNSCYParRGpQLVCTGSDDGTVKLWDIRK 184
           8*******9659955588999***********876 PP

UBD/Beta-Prp

   S: 48   lsgheaevtavkfspdgkilvtgseDrtikvwdls.tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsg 135
           lsghe+ev+++kf+p+g++l++++ Dr+i +w++  +++   tlkgh+  v+ l+++ +g+ l s+s d+t+ vwd etg+ ++  l+g
   Q: 63   LSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYgDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVK-RLKG 150
           8*******************************8765999*********************************************.**** PP
   S: 136  hdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtd 223
           h+++vn+      g +l+ +Gs+D+tv+lWd++ +  ++t++  +t +v  ++f++++ +++sg+ d+++k+wdl++++  +t++gh d
   Q: 151  HTSFVNSCYPARRGpQLVCTGSDDGTVKLWDIRKKAAIQTFQ--NTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 237
           *****************************************7..6******************************************** PP
   S: 224  nvksvrfspnderlvsgssDgsiriWdlr 252
            v+ + +s+++ +l+s ++D+++r+Wd+r
   Q: 238  SVTGLSLSSEGSYLLSNAMDNTVRVWDVR 266
           ***************************97 PP

Organism

Callithrix jacchus

Protein Sequence
(Fasta)

MIEQQKRKGP ELSLVPVKRQ RHELLLGATG SGPGAGQQQA TPGALLQAGP PRCSSLQAPI 60
MLLSGHEGEV YCCKFHPNGS TLASAGFDRL ILLWNVYGDC DNYATLKGHS GAVMELHYNT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTGTAGCGC GTTCAGTGGC GGCGCTGAAG AGACCGGTTG CCGCCATGAT AGAACAGCAG 60
AAGCGTAAGG GCCCGGAGTT GTCGCTGGTC CCAGTCAAGC GGCAGCGCCA TGAGTTGCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0543--Viral nucleoprotein
KW-0946--Virion
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0005829--C:cytosol
GO:0016607--C:nuclear speck
GO:0019013--C:viral nucleocapsid
GO:0003723--F:RNA binding

KEGG

cjc:100392445

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000138	Aegilops tauschii	56.38	8.00e-121	426.00
IUUC-Aml-001428	Ailuropoda melanoleuca	96.49	5.00e-180	623.00
IUUC-Atr-003164	Amborella trichopoda	58.99	7.00e-122	430.00
IUUC-Apl-003447	Anas platyrhynchos	96.86	3.00e-162	563.00
IUUC-Aca-004270	Anolis carolinensis	81.22	3.00e-169	587.00
IUUC-Aly-005659	Arabidopsis lyrata	59.82	1.00e-124	439.00
IUUC-Ath-006764	Arabidopsis thaliana	59.21	2.00e-124	438.00
IUUC-Acl-008324	Aspergillus clavatus	47.08	2.00e-95	342.00
IUUC-Afl-008607	Aspergillus flavus	49.66	8.00e-90	323.00
IUUC-Afu-008998	Aspergillus fumigatus	47.08	2.00e-95	342.00
IUUC-Ani-009363	Aspergillus nidulans	46.24	1.00e-95	343.00
IUUC-Ang-009513	Aspergillus niger	48.51	3.00e-85	308.00
IUUC-Aor-010237	Aspergillus oryzae	47.69	4.00e-96	344.00
IUUC-Ate-010374	Aspergillus terreus	46.20	2.00e-83	302.00
IUUC-Ame-010728	Astyanax mexicanus	83.61	3.00e-172	597.00
IUUC-Bgr-012297	Blumeria graminis	46.15	2.00e-70	259.00
IUUC-Bta-012433	Bos taurus	98.88	0.00e+00	651.00
IUUC-Bci-013763	Botrytis cinerea	47.84	4.00e-95	341.00
IUUC-Bdi-014490	Brachypodium distachyon	57.01	9.00e-120	422.00
IUUC-Bol-016479	Brassica oleracea	61.86	3.00e-124	437.00
IUUC-Bra-017219	Brassica rapa	62.14	3.00e-124	438.00
IUUC-Cel-018512	Caenorhabditis elegans	56.04	8.00e-114	403.00
IUUC-Cfa-020998	Canis familiaris	98.60	0.00e+00	657.00
IUUC-Cpo-021580	Cavia porcellus	97.49	0.00e+00	652.00
IUUC-Cre-022859	Chlamydomonas reinhardtii	53.37	8.00e-108	383.00
IUUC-Csa-023456	Chlorocebus sabaeus	96.37	0.00e+00	655.00
IUUC-Cho-024644	Choloepus hoffmanni	99.35	2.00e-179	621.00
IUUC-Cin-025463	Ciona intestinalis	58.84	2.00e-126	445.00
IUUC-Cgl-026497	Colletotrichum gloeosporioides	46.36	6.00e-95	340.00
IUUC-Cne-026780	Cryptococcus neoformans	39.39	2.00e-67	249.00
IUUC-Dre-027671	Danio rerio	81.11	5.00e-177	613.00
IUUC-Dno-029769	Dasypus novemcinctus	98.32	0.00e+00	661.00
IUUC-Dor-030776	Dipodomys ordii	97.75	2.00e-85	308.00
IUUC-Dse-031316	Dothistroma septosporum	43.11	6.00e-87	313.00
IUUC-Dme-031756	Drosophila melanogaster	61.46	1.00e-124	439.00
IUUC-Ete-032753	Echinops telfairi	88.83	2.00e-163	568.00
IUUC-Eca-033979	Equus caballus	99.16	0.00e+00	651.00
IUUC-Eeu-034862	Erinaceus europaeus	99.28	3.00e-72	265.00
IUUC-Fca-036110	Felis catus	98.70	2.00e-159	554.00
IUUC-Fal-037648	Ficedula albicollis	96.77	1.00e-176	612.00
IUUC-Fox-037861	Fusarium oxysporum	45.95	2.00e-91	328.00
IUUC-Fso-038405	Fusarium solani	45.95	4.00e-91	327.00
IUUC-Gmo-039383	Gadus morhua	82.78	1.00e-172	598.00
IUUC-Ggr-040082	Gaeumannomyces graminis	43.98	7.00e-84	303.00
IUUC-Gga-040785	Gallus gallus	90.29	6.00e-179	619.00
IUUC-Gac-041645	Gasterosteus aculeatus	82.78	5.00e-170	590.00
IUUC-Gma-044329	Glycine max	60.44	2.00e-122	431.00
IUUC-Hsa-045918	Homo sapiens	96.37	0.00e+00	655.00
IUUC-Hvu-047342	Hordeum vulgare	56.05	3.00e-120	424.00
IUUC-Itr-048047	Ictidomys tridecemlineatus	98.63	4.00e-112	396.00
IUUC-Kpa-049149	Komagataella pastoris	33.98	2.00e-36	145.00
IUUC-Lch-050395	Latimeria chalumnae	87.19	0.00e+00	656.00
IUUC-Lpe-051275	Leersia perrieri	58.51	7.00e-121	427.00
IUUC-Loc-052666	Lepisosteus oculatus	85.64	2.00e-173	601.00
IUUC-Lma-053129	Leptosphaeria maculans	43.77	2.00e-88	318.00
IUUC-Laf-054512	Loxodonta africana	95.53	0.00e+00	646.00
IUUC-Mcc-055819	Macaca mulatta	96.37	0.00e+00	655.00
IUUC-Meu-056350	Macropus eugenii	82.27	3.00e-158	550.00
IUUC-Mor-057063	Magnaporthe oryzae	48.10	1.00e-91	329.00
IUUC-Mpo-057369	Magnaporthe poae	44.88	1.00e-84	306.00
IUUC-Mtr-058228	Medicago truncatula	59.49	7.00e-122	429.00
IUUC-Mla-059093	Melampsora laricipopulina	39.66	9.00e-70	256.00
IUUC-Mga-059719	Meleagris gallopavo	96.50	3.00e-178	617.00
IUUC-Mvi-060285	Microbotryum violaceum	40.06	8.00e-64	237.00
IUUC-Mmr-061685	Microcebus murinus	92.74	1.00e-170	592.00
IUUC-Mdo-062121	Monodelphis domestica	91.14	0.00e+00	632.00
IUUC-Mmu-063216	Mus musculus	97.77	0.00e+00	662.00
IUUC-Mac-065463	Musa acuminata	54.79	5.00e-111	394.00
IUUC-Mpu-066390	Mustela putorius furo	98.32	0.00e+00	666.00
IUUC-Mlu-066932	Myotis lucifugus	98.25	1.00e-180	625.00
IUUC-Nfi-068509	Neosartorya fischeri	47.08	3.00e-95	341.00
IUUC-Ncr-068870	Neurospora crassa	47.63	2.00e-92	332.00
IUUC-Nle-069539	Nomascus leucogenys	96.37	0.00e+00	654.00
IUUC-Opr-070555	Ochotona princeps	86.03	5.00e-167	580.00
IUUC-Ont-071490	Oreochromis niloticus	82.27	4.00e-170	590.00
IUUC-Oan-073044	Ornithorhynchus anatinus	79.34	2.00e-154	538.00
IUUC-Ocu-073764	Oryctolagus cuniculus	98.88	0.00e+00	668.00
IUUC-Oba-075704	Oryza barthii	58.51	8.00e-121	426.00
IUUC-Obr-076455	Oryza brachyantha	58.82	1.00e-120	426.00
IUUC-Ogl-077382	Oryza glaberrima	57.61	5.00e-121	427.00
IUUC-Ogu-078739	Oryza glumaepatula	58.51	7.00e-121	426.00
IUUC-Oin-079072	Oryza indica	58.51	7.00e-121	426.00
IUUC-Olo-080809	Oryza longistaminata	58.51	7.00e-121	426.00
IUUC-Ome-081677	Oryza meridionalis	58.51	1.00e-120	426.00
IUUC-Oni-082937	Oryza nivara	58.51	7.00e-121	426.00
IUUC-Opu-083510	Oryza punctata	58.51	7.00e-121	426.00
IUUC-Oru-084360	Oryza rufipogon	57.31	8.00e-121	426.00
IUUC-Osa-085640	Oryza sativa	57.31	8.00e-121	426.00
IUUC-Ola-086504	Oryzias latipes	81.94	2.00e-171	594.00
IUUC-Olu-087869	Ostreococcus lucimarinus	41.64	3.00e-63	234.00
IUUC-Oga-088773	Otolemur garnettii	98.88	0.00e+00	655.00
IUUC-Oar-089677	Ovis aries	98.06	0.00e+00	646.00
IUUC-Pan-092683	Papio anubis	96.37	0.00e+00	655.00
IUUC-Psi-093415	Pelodiscus sinensis	97.72	3.00e-176	610.00
IUUC-Pma-094562	Petromyzon marinus	76.60	2.00e-170	591.00
IUUC-Pno-095014	Phaeosphaeria nodorum	47.58	1.00e-89	323.00
IUUC-Ppa-095728	Physcomitrella patens	57.79	4.00e-122	431.00
IUUC-Pfo-096579	Poecilia formosa	82.22	1.00e-168	585.00
IUUC-Pab-098313	Pongo abelii	96.37	0.00e+00	655.00
IUUC-Pop-099747	Populus trichocarpa	61.49	2.00e-123	435.00
IUUC-Pca-100871	Procavia capensis	85.00	6.00e-130	456.00
IUUC-Ppe-101389	Prunus persica	62.14	3.00e-124	437.00
IUUC-Pva-102468	Pteropus vampyrus	84.64	2.00e-149	521.00
IUUC-Pgr-103523	Puccinia graminis	41.77	6.00e-73	267.00
IUUC-Ptt-103930	Puccinia triticina	39.15	8.00e-73	267.00
IUUC-Pte-104299	Pyrenophora teres	48.42	4.00e-94	338.00
IUUC-Pyt-104564	Pyrenophora triticirepentis	48.73	1.00e-93	336.00
IUUC-Rno-105796	Rattus norvegicus	98.32	0.00e+00	654.00
IUUC-Sha-107191	Sarcophilus harrisii	90.86	0.00e+00	632.00
IUUC-Sja-107952	Schizosaccharomyces japonicus	37.92	2.00e-63	236.00
IUUC-Spo-108249	Schizosaccharomyces pombe	43.53	2.00e-80	292.00
IUUC-Ssl-108448	Sclerotinia sclerotiorum	49.53	2.00e-94	338.00
IUUC-Sit-110805	Setaria italica	57.59	7.00e-120	424.00
IUUC-Sly-111567	Solanum lycopersicum	61.71	1.00e-125	442.00
IUUC-Stu-112562	Solanum tuberosum	61.71	2.00e-126	444.00
IUUC-Sar-112991	Sorex araneus	98.63	1.00e-120	425.00
IUUC-Sbi-114010	Sorghum bicolor	58.58	7.00e-119	420.00
IUUC-Sre-114947	Sporisorium reilianum	42.99	3.00e-74	271.00
IUUC-Ssc-115371	Sus scrofa	98.88	0.00e+00	651.00
IUUC-Tgu-117429	Taeniopygia guttata	94.14	2.00e-174	604.00
IUUC-Tru-118081	Takifugu rubripes	83.06	7.00e-173	599.00
IUUC-Tsy-119101	Tarsius syrichta	86.87	4.00e-159	553.00
IUUC-Tni-120532	Tetraodon nigroviridis	82.78	1.00e-169	588.00
IUUC-Tca-121373	Theobroma cacao	62.14	6.00e-125	440.00
IUUC-Tre-122050	Trichoderma reesei	45.31	5.00e-90	324.00
IUUC-Tvi-122394	Trichoderma virens	42.65	1.00e-84	306.00
IUUC-Tae-124661	Triticum aestivum	56.18	5.00e-120	424.00
IUUC-Tme-126998	Tuber melanosporum	51.46	3.00e-94	338.00
IUUC-Tbe-128032	Tupaia belangeri	98.60	0.00e+00	656.00
IUUC-Ttr-129102	Tursiops truncatus	88.27	5.00e-159	553.00
IUUC-Uma-129363	Ustilago maydis	43.61	1.00e-77	283.00
IUUC-Vda-129891	Verticillium dahliae	48.90	3.00e-93	335.00
IUUC-Vpa-130827	Vicugna pacos	98.04	0.00e+00	648.00
IUUC-Vvi-131202	Vitis vinifera	56.70	6.00e-124	436.00
IUUC-Xtr-132769	Xenopus tropicalis	85.56	2.00e-170	591.00
IUUC-Xma-133147	Xiphophorus maculatus	82.22	3.00e-168	584.00
IUUC-Yli-134352	Yarrowia lipolytica	33.77	2.00e-36	145.00
IUUC-Zma-135294	Zea mays	58.39	1.00e-118	419.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence