iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Smo-108720

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

GL377597

Gene Name

SELMODRAFT_175982

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SELMODRAFT_175982	EFJ22134	EFJ22134

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-36	122.7	346	385
UBD/Beta-Prp	2.00e-40	139.6	252	410

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvllks 38
           Ht++++++++  ++ ++l+++s+Dgt+k+WD+r+ v+l++
   Q: 346  HTSWISACKWhrQSpKHLLTSSYDGTVKMWDIRSKVPLQT 385
           ***********9555*******************999986 PP

UBD/Beta-Prp

   S: 85   kcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlkt.gkllrtl..tgghtd 181
           + + t k+h++ v +l++ + + ++ s+s+d   r wd+et           +++  c++v ++g +l+++G++D ++r+Wd ++ g+++  l  t+ ht+
   Q: 252  TAFTTHKEHTQCVAALEWPE-DRYIFSASWDHSFRQWDVETSINTL--TMTCSKALHCLSVGGEGsSLVATGGADPVLRIWDTRMpGTVVPVLqlTS-HTS 348
           55677888999999999977.99****************9987775..777788999999999999*****************88345555557577.*** PP
   S: 182  svyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssD 243
            +   ++++++ k+l++ s+dgtvk+wd++++  ++t+++h+d v++ + + +++ +v+g++D
   Q: 349  WISACKWHRQSpKHLLTSSYDGTVKMWDIRSKVPLQTVEAHKDKVLCADWW-REDTVVTGGAD 410
           *********999***************************************.88888999888 PP

Organism

Selaginella moellendorffii

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDAGERQVQV RFTTRLGSDL RVEATAFSLP VHLNRYGLSQ IINTLLALDS PRPFDFLFDG 60
ELIRTTLEQL YLSKNLSAES ILVLEYILAV GPPELQSSQP EKDWVSAVNG VNPSLILSGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATGCTG GGGAGCGCCA AGTCCAGGTG CGCTTCACGA CGCGGCTGGG GAGCGATCTT 60
CGCGTGGAAG CCACCGCATT CTCGCTACCC GTGCATCTCA ATCGCTACGG CCTCTCGCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

smo:SELMODRAFT_175982

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	50.35	9.00e-120	422.00
IUUC-Aml-001997	Ailuropoda melanoleuca	33.33	3.00e-51	195.00
IUUC-Atr-002544	Amborella trichopoda	47.98	3.00e-114	404.00
IUUC-Apl-003981	Anas platyrhynchos	32.97	4.00e-49	187.00
IUUC-Aca-004370	Anolis carolinensis	33.81	1.00e-57	216.00
IUUC-Aly-006455	Arabidopsis lyrata	46.76	6.00e-115	406.00
IUUC-Ath-006669	Arabidopsis thaliana	46.28	1.00e-109	389.00
IUUC-Acl-008177	Aspergillus clavatus	28.37	5.00e-35	141.00
IUUC-Afl-008617	Aspergillus flavus	27.30	3.00e-31	129.00
IUUC-Ani-009136	Aspergillus nidulans	25.71	9.00e-33	134.00
IUUC-Ang-009701	Aspergillus niger	27.18	3.00e-29	122.00
IUUC-Aor-009884	Aspergillus oryzae	27.30	4.00e-31	128.00
IUUC-Ame-011432	Astyanax mexicanus	33.57	3.00e-63	234.00
IUUC-Bta-012829	Bos taurus	32.86	1.00e-52	199.00
IUUC-Bci-013953	Botrytis cinerea	27.66	5.00e-32	131.00
IUUC-Bdi-014351	Brachypodium distachyon	48.01	9.00e-110	389.00
IUUC-Bol-016514	Brassica oleracea	48.31	5.00e-106	377.00
IUUC-Bra-018095	Brassica rapa	48.33	1.00e-111	395.00
IUUC-Cja-019468	Callithrix jacchus	33.57	2.00e-51	195.00
IUUC-Cfa-020471	Canis familiaris	33.57	6.00e-53	200.00
IUUC-Cpo-022260	Cavia porcellus	34.52	1.00e-53	202.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	38.79	5.00e-67	247.00
IUUC-Csa-023989	Chlorocebus sabaeus	33.33	1.00e-51	196.00
IUUC-Cho-024426	Choloepus hoffmanni	33.55	7.00e-40	157.00
IUUC-Cne-027063	Cryptococcus neoformans	26.47	8.00e-26	110.00
IUUC-Dre-027907	Danio rerio	33.57	7.00e-62	230.00
IUUC-Dno-029225	Dasypus novemcinctus	33.10	5.00e-53	200.00
IUUC-Dor-031082	Dipodomys ordii	25.54	2.00e-28	119.00
IUUC-Dse-031308	Dothistroma septosporum	28.93	3.00e-38	152.00
IUUC-Dme-032189	Drosophila melanogaster	28.44	5.00e-40	157.00
IUUC-Ete-032247	Echinops telfairi	32.38	2.00e-48	186.00
IUUC-Eca-034285	Equus caballus	33.10	2.00e-52	199.00
IUUC-Eeu-035322	Erinaceus europaeus	31.16	3.00e-43	168.00
IUUC-Fca-036114	Felis catus	33.57	4.00e-53	201.00
IUUC-Fal-036891	Ficedula albicollis	34.25	6.00e-46	177.00
IUUC-Fox-037965	Fusarium oxysporum	27.59	3.00e-29	122.00
IUUC-Fso-038244	Fusarium solani	26.34	2.00e-28	119.00
IUUC-Gmo-039040	Gadus morhua	34.52	9.00e-64	236.00
IUUC-Ggr-040093	Gaeumannomyces graminis	27.23	3.00e-24	105.00
IUUC-Gga-040610	Gallus gallus	33.25	2.00e-53	202.00
IUUC-Gac-042117	Gasterosteus aculeatus	34.69	4.00e-57	214.00
IUUC-Gma-043425	Glycine max	48.95	3.00e-117	414.00
IUUC-Ggo-045179	Gorilla gorilla	33.57	5.00e-53	201.00
IUUC-Hsa-046114	Homo sapiens	33.33	3.00e-52	198.00
IUUC-Hvu-047331	Hordeum vulgare	50.26	1.00e-101	362.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	33.57	2.00e-53	202.00
IUUC-Lch-050655	Latimeria chalumnae	30.46	8.00e-36	143.00
IUUC-Lpe-051675	Leersia perrieri	49.64	5.00e-117	414.00
IUUC-Loc-052868	Lepisosteus oculatus	33.49	3.00e-57	215.00
IUUC-Lma-053258	Leptosphaeria maculans	30.00	2.00e-34	140.00
IUUC-Laf-053993	Loxodonta africana	33.33	4.00e-54	204.00
IUUC-Mcc-055128	Macaca mulatta	26.79	1.00e-31	129.00
IUUC-Meu-056501	Macropus eugenii	32.82	6.00e-43	167.00
IUUC-Mpo-057463	Magnaporthe poae	36.84	1.00e-16	79.00
IUUC-Mtr-058367	Medicago truncatula	46.99	4.00e-110	390.00
IUUC-Mla-059107	Melampsora laricipopulina	26.53	3.00e-32	132.00
IUUC-Mmu-063546	Mus musculus	34.05	2.00e-54	205.00
IUUC-Mac-065540	Musa acuminata	47.78	4.00e-113	400.00
IUUC-Mpu-066284	Mustela putorius furo	32.86	3.00e-52	198.00
IUUC-Mlu-067241	Myotis lucifugus	33.81	2.00e-53	202.00
IUUC-Nle-068981	Nomascus leucogenys	33.57	4.00e-52	197.00
IUUC-Opr-071218	Ochotona princeps	31.91	5.00e-48	184.00
IUUC-Ont-071646	Oreochromis niloticus	34.04	2.00e-58	218.00
IUUC-Oan-073453	Ornithorhynchus anatinus	31.98	1.00e-56	213.00
IUUC-Ocu-074008	Oryctolagus cuniculus	33.81	2.00e-54	205.00
IUUC-Oba-075712	Oryza barthii	41.87	3.00e-85	308.00
IUUC-Ogl-077229	Oryza glaberrima	49.30	9.00e-117	412.00
IUUC-Ogu-078977	Oryza glumaepatula	41.87	2.00e-85	308.00
IUUC-Oin-079683	Oryza indica	49.30	1.00e-117	416.00
IUUC-Olo-080291	Oryza longistaminata	43.67	2.00e-63	234.00
IUUC-Ome-081834	Oryza meridionalis	49.76	1.00e-116	412.00
IUUC-Oni-082507	Oryza nivara	47.66	4.00e-109	387.00
IUUC-Opu-083396	Oryza punctata	50.24	4.00e-118	417.00
IUUC-Oru-085220	Oryza rufipogon	47.90	1.00e-109	389.00
IUUC-Osa-085767	Oryza sativa	49.30	1.00e-117	416.00
IUUC-Ola-087420	Oryzias latipes	34.29	4.00e-62	231.00
IUUC-Olu-087740	Ostreococcus lucimarinus	33.64	5.00e-64	237.00
IUUC-Oga-088264	Otolemur garnettii	33.10	3.00e-53	201.00
IUUC-Oar-089335	Ovis aries	33.57	4.00e-54	204.00
IUUC-Ptr-091320	Pan troglodytes	33.33	3.00e-52	198.00
IUUC-Pan-092833	Papio anubis	33.57	6.00e-52	197.00
IUUC-Psi-093504	Pelodiscus sinensis	32.70	5.00e-53	200.00
IUUC-Pma-094189	Petromyzon marinus	33.57	1.00e-57	216.00
IUUC-Pno-094929	Phaeosphaeria nodorum	27.35	1.00e-32	133.00
IUUC-Ppa-095429	Physcomitrella patens	54.16	6.00e-132	463.00
IUUC-Pfo-096337	Poecilia formosa	34.20	5.00e-62	230.00
IUUC-Pab-097571	Pongo abelii	33.10	6.00e-52	197.00
IUUC-Pop-099977	Populus trichocarpa	47.74	1.00e-115	408.00
IUUC-Pca-100394	Procavia capensis	30.86	3.00e-43	168.00
IUUC-Ppe-101848	Prunus persica	45.48	3.00e-113	400.00
IUUC-Pva-102921	Pteropus vampyrus	31.51	9.00e-21	93.60
IUUC-Pte-104135	Pyrenophora teres	28.15	1.00e-32	134.00
IUUC-Rno-105114	Rattus norvegicus	33.57	7.00e-54	203.00
IUUC-Sha-107122	Sarcophilus harrisii	33.58	1.00e-54	206.00
IUUC-Spo-108134	Schizosaccharomyces pombe	29.64	6.00e-37	147.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	27.93	1.00e-35	143.00
IUUC-Sit-110354	Setaria italica	50.59	2.00e-118	418.00
IUUC-Sly-111178	Solanum lycopersicum	47.65	7.00e-111	392.00
IUUC-Stu-112778	Solanum tuberosum	48.23	2.00e-109	388.00
IUUC-Sar-113596	Sorex araneus	34.36	3.00e-38	151.00
IUUC-Sbi-114193	Sorghum bicolor	48.22	4.00e-112	397.00
IUUC-Sre-115002	Sporisorium reilianum	27.00	6.00e-15	74.70
IUUC-Ssc-116066	Sus scrofa	33.10	1.00e-52	199.00
IUUC-Tgu-117048	Taeniopygia guttata	33.51	5.00e-50	190.00
IUUC-Tni-119820	Tetraodon nigroviridis	33.41	9.00e-58	216.00
IUUC-Tca-121605	Theobroma cacao	50.48	7.00e-118	416.00
IUUC-Tre-121947	Trichoderma reesei	27.95	1.00e-32	133.00
IUUC-Tvi-122481	Trichoderma virens	28.16	4.00e-33	134.00
IUUC-Tae-123504	Triticum aestivum	50.35	2.00e-119	421.00
IUUC-Tur-126586	Triticum urartu	50.26	1.00e-109	388.00
IUUC-Tme-126900	Tuber melanosporum	30.75	1.00e-45	176.00
IUUC-Tbe-127736	Tupaia belangeri	26.59	3.00e-21	95.10
IUUC-Ttr-129041	Tursiops truncatus	28.10	3.00e-36	144.00
IUUC-Vpa-130260	Vicugna pacos	33.33	2.00e-53	201.00
IUUC-Vvi-131009	Vitis vinifera	48.38	4.00e-117	413.00
IUUC-Xtr-132083	Xenopus tropicalis	32.08	1.00e-52	199.00
IUUC-Xma-133094	Xiphophorus maculatus	33.49	1.00e-60	226.00
IUUC-Zma-135509	Zea mays	49.18	4.00e-117	413.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence