iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ata-000488

Ensembl Protein ID

EMT10525

UniProt Accession

M8BA49; M8BA49_AEGTA

Genbank Protein ID

EMT10525.1

Protein Name

DEAD-box ATP-dependent RNA helicase 29

Genbank Nucleotide ID

KD558278

Gene Name

F775_28932

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
F775_28932	EMT10525	EMT10525

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-23	82.7	1026	1055
UBD/Beta-Prp	4.30e-43	148.4	982	1197

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWD 29
           H+ ++t+l+f   d ll++Gs D+t++vW 
   Q: 1026 HSKKITSLKFvpRDELLITGSADKTVRVWQ 1055
           999********877***************5 PP

UBD/Beta-Prp

   S: 49   sgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqclee..tlsghdgvvncvvv 145
           + +++++ +++++++++i++tg+ D ++ ++d  +g+ + tl+ h+++++sl+f p ++ l++Gs+d+t+rvw+ +++  +    t + h + v  v+v
   Q: 982  KTNKPGILSIDIHHSKDIIATGGIDTNAVLFDRPSGQVLCTLTDHSKKITSLKFVPRDELLITGSADKTVRVWQGNEDGSYGCrhTMRDHGAEVEAVTV 1080
           455666666666666666666666666666666666666666666666666666666666666666666666655544333222366666666666666 PP
   S: 146  hpdgnllvsGslDrtvrlWdlktgkllrtl.tgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlng...htdnvksvrfspnderlvsg 240
           h ++++++++s D+t  ++d++tg++l++  +   +d  +s +f+++g  l +g   g +k+wd++++  v +++g   h  +v+ + fs+n+ +l+++
   Q: 1081 HASQKYFATASRDSTWCFYDISTGSCLTQVgEASGQDGYTSAAFHPDGLILGTGTSEGVIKIWDVKSQARVAKFEGevgHVGTVTAMSFSENGYFLATA 1179
           666666666666666666666666666666522235555566666666666666666666666666666666665433355666666666666666666 PP
   S: 241  ssDgsiriWdlrsgdllkt 259
           + Dg +++Wdlr+  + +t
   Q: 1180 ALDG-VKLWDLRKLRNFRT 1197
           6654.56666666555544 PP

Organism

Aegilops tauschii

Protein Sequence
(Fasta)

MARTGSGKTA AFLVPMLQRL RHRDPGAGIR ALILSPTRDL ATQTLKFTHQ LGKFSDLKTG 60
LIVGGGSMES QFEVLADNPD IIIATPGRFE HILSMVDDLS LRSVEYVVFD EADSLFSLGF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCCGCA CGGGCTCCGG CAAGACCGCC GCCTTCCTCG TGCCCATGCT CCAGCGCCTC 60
CGCCACCGCG ACCCCGGCGC CGGCATCCGC GCCCTCATCC TCTCCCCCAC CCGCGACCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0067--ATP-binding
KW-0347--Helicase
KW-0378--Hydrolase
KW-0547--Nucleotide-binding
KW-0853--WD repeat

Interpro

IPR012541--DBP10_C
IPR033517--DDX54/DBP10
IPR011545--DEAD/DEAH_box_helicase_dom
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR013915--Pre-mRNA_splic_Prp19
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08147--DBP10CT
PF00270--DEAD
PF00271--Helicase_C
PF08606--Prp19
PF00400--WD40

SMART

SM01123--DBP10CT
SM00487--DEXDc
SM00490--HELICc
SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0004004--F:ATP-dependent RNA helicase activity
GO:0003723--F:RNA binding

KEGG

ats:F775_28932

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001230	Ailuropoda melanoleuca	38.82	7.00e-86	310.00
IUUC-Atr-002594	Amborella trichopoda	68.34	0.00e+00	725.00
IUUC-Apl-003686	Anas platyrhynchos	38.90	5.00e-75	274.00
IUUC-Aca-005272	Anolis carolinensis	40.97	6.00e-93	333.00
IUUC-Aly-005586	Arabidopsis lyrata	65.58	0.00e+00	707.00
IUUC-Ath-007693	Arabidopsis thaliana	65.45	0.00e+00	703.00
IUUC-Acl-008335	Aspergillus clavatus	29.07	6.00e-49	187.00
IUUC-Afl-008527	Aspergillus flavus	29.65	2.00e-46	179.00
IUUC-Afu-008957	Aspergillus fumigatus	28.57	5.00e-50	191.00
IUUC-Aor-009905	Aspergillus oryzae	29.38	2.00e-48	185.00
IUUC-Bgr-012283	Blumeria graminis	27.14	1.00e-35	143.00
IUUC-Bta-013242	Bos taurus	39.53	5.00e-92	330.00
IUUC-Bci-013901	Botrytis cinerea	29.53	6.00e-48	184.00
IUUC-Bdi-014896	Brachypodium distachyon	86.68	0.00e+00	916.00
IUUC-Bol-016045	Brassica oleracea	65.00	0.00e+00	700.00
IUUC-Bra-017902	Brassica rapa	64.62	0.00e+00	698.00
IUUC-Cel-018271	Caenorhabditis elegans	39.26	4.00e-63	234.00
IUUC-Cja-019879	Callithrix jacchus	39.46	3.00e-91	328.00
IUUC-Cfa-020175	Canis familiaris	39.34	4.00e-92	331.00
IUUC-Cpo-022379	Cavia porcellus	39.53	8.00e-92	330.00
IUUC-Cre-022993	Chlamydomonas reinhardtii	45.66	7.00e-84	303.00
IUUC-Csa-023500	Chlorocebus sabaeus	39.34	1.00e-91	329.00
IUUC-Cin-025699	Ciona intestinalis	42.11	4.00e-87	314.00
IUUC-Csv-026128	Ciona savignyi	44.07	8.00e-76	277.00
IUUC-Cne-026860	Cryptococcus neoformans	35.89	8.00e-80	290.00
IUUC-Dre-028187	Danio rerio	40.19	8.00e-92	330.00
IUUC-Dno-029453	Dasypus novemcinctus	39.34	2.00e-91	329.00
IUUC-Dme-031906	Drosophila melanogaster	40.49	2.00e-87	315.00
IUUC-Eca-033478	Equus caballus	39.53	5.00e-92	330.00
IUUC-Eeu-034974	Erinaceus europaeus	42.73	9.00e-70	256.00
IUUC-Fca-036194	Felis catus	39.34	4.00e-92	331.00
IUUC-Fal-037417	Ficedula albicollis	39.73	3.00e-93	335.00
IUUC-Fso-038256	Fusarium solani	28.04	1.00e-46	180.00
IUUC-Gmo-038713	Gadus morhua	39.61	1.00e-92	332.00
IUUC-Gga-041143	Gallus gallus	39.73	5.00e-93	334.00
IUUC-Gac-042129	Gasterosteus aculeatus	40.00	1.00e-92	332.00
IUUC-Gma-043635	Glycine max	69.31	0.00e+00	749.00
IUUC-Ggo-045262	Gorilla gorilla	39.34	1.00e-91	329.00
IUUC-Hsa-046036	Homo sapiens	39.34	1.00e-91	329.00
IUUC-Itr-048169	Ictidomys tridecemlineatus	42.17	2.00e-72	265.00
IUUC-Lch-050105	Latimeria chalumnae	39.84	2.00e-90	325.00
IUUC-Lpe-050976	Leersia perrieri	80.46	0.00e+00	858.00
IUUC-Loc-052042	Lepisosteus oculatus	36.13	7.00e-71	260.00
IUUC-Lma-053143	Leptosphaeria maculans	30.93	5.00e-48	186.00
IUUC-Laf-053451	Loxodonta africana	37.90	3.00e-88	318.00
IUUC-Mcc-055786	Macaca mulatta	39.34	1.00e-91	329.00
IUUC-Meu-056161	Macropus eugenii	41.38	9.00e-46	177.00
IUUC-Mtr-057756	Medicago truncatula	67.64	0.00e+00	725.00
IUUC-Mla-059085	Melampsora laricipopulina	33.96	6.00e-64	237.00
IUUC-Mga-060158	Meleagris gallopavo	39.52	7.00e-87	313.00
IUUC-Mvi-060441	Microbotryum violaceum	34.72	5.00e-61	228.00
IUUC-Mmr-061085	Microcebus murinus	39.34	1.00e-91	329.00
IUUC-Mdo-061804	Monodelphis domestica	39.34	1.00e-91	329.00
IUUC-Mmu-063608	Mus musculus	37.94	3.00e-88	318.00
IUUC-Mac-064972	Musa acuminata	75.49	0.00e+00	807.00
IUUC-Mpu-065700	Mustela putorius furo	39.34	4.00e-92	331.00
IUUC-Mlu-068223	Myotis lucifugus	38.79	8.00e-90	323.00
IUUC-Nfi-068504	Neosartorya fischeri	30.23	5.00e-52	197.00
IUUC-Nle-069754	Nomascus leucogenys	39.34	1.00e-91	329.00
IUUC-Opr-070621	Ochotona princeps	40.56	2.00e-86	312.00
IUUC-Ont-071377	Oreochromis niloticus	40.19	4.00e-92	331.00
IUUC-Ocu-074182	Oryctolagus cuniculus	37.80	7.00e-88	317.00
IUUC-Oba-075509	Oryza barthii	80.50	0.00e+00	865.00
IUUC-Obr-076480	Oryza brachyantha	81.01	0.00e+00	865.00
IUUC-Ogl-077052	Oryza glaberrima	80.50	0.00e+00	865.00
IUUC-Ogu-078919	Oryza glumaepatula	80.69	0.00e+00	866.00
IUUC-Oin-079357	Oryza indica	77.41	0.00e+00	808.00
IUUC-Olo-080376	Oryza longistaminata	80.35	0.00e+00	867.00
IUUC-Ome-081973	Oryza meridionalis	80.35	0.00e+00	866.00
IUUC-Oni-082849	Oryza nivara	80.12	0.00e+00	861.00
IUUC-Opu-083243	Oryza punctata	81.27	0.00e+00	873.00
IUUC-Oru-084613	Oryza rufipogon	80.31	0.00e+00	862.00
IUUC-Osa-085407	Oryza sativa	80.31	0.00e+00	862.00
IUUC-Ola-086566	Oryzias latipes	40.15	4.00e-93	334.00
IUUC-Olu-087757	Ostreococcus lucimarinus	41.11	1.00e-97	349.00
IUUC-Oga-089010	Otolemur garnettii	38.39	2.00e-86	312.00
IUUC-Oar-089638	Ovis aries	39.53	5.00e-92	330.00
IUUC-Ptr-091141	Pan troglodytes	39.34	1.00e-91	329.00
IUUC-Pan-092662	Papio anubis	39.34	1.00e-91	329.00
IUUC-Psi-093777	Pelodiscus sinensis	39.91	6.00e-80	290.00
IUUC-Pno-095115	Phaeosphaeria nodorum	30.60	2.00e-48	186.00
IUUC-Ppa-095924	Physcomitrella patens	65.42	0.00e+00	685.00
IUUC-Pfo-096390	Poecilia formosa	40.97	4.00e-94	337.00
IUUC-Pab-098250	Pongo abelii	39.55	4.00e-87	314.00
IUUC-Pop-099854	Populus trichocarpa	70.18	0.00e+00	753.00
IUUC-Pca-100553	Procavia capensis	39.15	2.00e-89	322.00
IUUC-Ppe-101383	Prunus persica	67.57	0.00e+00	724.00
IUUC-Pva-102189	Pteropus vampyrus	39.53	4.00e-92	331.00
IUUC-Pgr-103304	Puccinia graminis	32.77	6.00e-62	231.00
IUUC-Ptt-103984	Puccinia triticina	33.08	2.00e-63	236.00
IUUC-Pte-104385	Pyrenophora teres	29.15	9.00e-45	173.00
IUUC-Pyt-104697	Pyrenophora triticirepentis	29.64	8.00e-45	174.00
IUUC-Rno-105581	Rattus norvegicus	39.34	1.00e-91	329.00
IUUC-Sha-107071	Sarcophilus harrisii	37.55	2.00e-87	315.00
IUUC-Ssl-108628	Sclerotinia sclerotiorum	28.99	4.00e-45	175.00
IUUC-Smo-109648	Selaginella moellendorffii	60.63	0.00e+00	651.00
IUUC-Sit-109873	Setaria italica	79.92	0.00e+00	860.00
IUUC-Sly-111673	Solanum lycopersicum	69.13	0.00e+00	733.00
IUUC-Stu-112125	Solanum tuberosum	69.51	0.00e+00	730.00
IUUC-Sbi-114696	Sorghum bicolor	72.97	0.00e+00	750.00
IUUC-Sre-115134	Sporisorium reilianum	33.64	8.00e-67	247.00
IUUC-Ssc-116260	Sus scrofa	39.53	3.00e-92	331.00
IUUC-Tgu-116533	Taeniopygia guttata	39.53	1.00e-92	333.00
IUUC-Tru-117800	Takifugu rubripes	39.50	9.00e-92	330.00
IUUC-Tsy-118980	Tarsius syrichta	37.40	6.00e-80	290.00
IUUC-Tni-120334	Tetraodon nigroviridis	42.12	8.00e-71	260.00
IUUC-Tca-121807	Theobroma cacao	68.34	0.00e+00	733.00
IUUC-Tre-121920	Trichoderma reesei	29.32	2.00e-42	166.00
IUUC-Tvi-122294	Trichoderma virens	28.54	6.00e-33	134.00
IUUC-Tae-125174	Triticum aestivum	94.46	0.00e+00	994.00
IUUC-Tur-126199	Triticum urartu	97.71	0.00e+00	1045.00
IUUC-Tme-127026	Tuber melanosporum	31.36	1.00e-54	207.00
IUUC-Tbe-127582	Tupaia belangeri	42.43	1.00e-69	256.00
IUUC-Ttr-128313	Tursiops truncatus	40.04	3.00e-91	328.00
IUUC-Uma-129626	Ustilago maydis	33.27	1.00e-65	243.00
IUUC-Vda-129699	Verticillium dahliae	28.91	1.00e-41	163.00
IUUC-Vpa-130593	Vicugna pacos	40.77	1.00e-86	312.00
IUUC-Vvi-131668	Vitis vinifera	70.76	0.00e+00	767.00
IUUC-Xtr-132186	Xenopus tropicalis	43.39	5.00e-81	294.00
IUUC-Xma-133212	Xiphophorus maculatus	40.97	3.00e-94	338.00
IUUC-Zma-135662	Zea mays	78.96	0.00e+00	859.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence