iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000048411.2	ENSRNOT00000083848.1	ENSRNOP00000070294.1
ENSRNOG00000048411.2	ENSRNOT00000075265.2	ENSRNOP00000066794.1

Annotation

mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	1.70e-17	63.5	56	131

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 1    vqvtvksldgs.eltlk.vnpsdtVaeLKekiekklgippeqqrLiykGkiLeddktLadyglkdgstihllekks 74
           ++++v+++dg+ ++t++ +++ + V+eL++kie+++++ p+ qrL y+Gk +ed++tL dy+++ ++ti ll+++s
   Q: 56   MWIQVRTMDGKeTHTVNsLSRLTKVQELRKKIEELFHVEPQLQRLFYRGKQMEDGHTLFDYDVRLNDTIQLLVRQS 131
           789*********************************************************************9976 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MESGIFGEGG SLPPLPVLLR GLQDLGLLGK LDIARRATLT GISLCFSVFL QHIGIMWIQV 60
RTMDGKETHT VNSLSRLTKV QELRKKIEEL FHVEPQLQRL FYRGKQMEDG HTLFDYDVRL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGAATAGGC ATGTAATGGA GTCAGGAATC TTTGGCGAGG GAGGATCCCT TCCTCCTCTC 60
CCGGTATTGC TACGGGGTTT ACAAGACCTG GGCCTTCTTG GTAAACTAGA TATAGCCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR015947--PUA-like_domain
IPR014722--Rib_L2_dom2
IPR003105--SRA_YDG
IPR021991--TTD_dom
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50053--UBIQUITIN_2
PS51015--YDG
PS50016--ZF_PHD_2
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00628--PHD
PF02182--SAD_SRA
PF12148--TTD
PF00240--ubiquitin

SMART

SM00249--PHD
SM00184--RING
SM00466--SRA
SM00213--UBQ

Gene Ontology

GO:0005720--C:nuclear heterochromatin
GO:0016363--C:nuclear matrix
GO:0005657--C:replication fork
GO:0044729--F:hemi-methylated DNA-binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0010390--P:histone monoubiquitination
GO:0010216--P:maintenance of DNA methylation
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0051865--P:protein autoubiquitination

KEGG

rno:316129

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000242	Aegilops tauschii	35.81	3.00e-46	179.00
IUUC-Aml-001285	Ailuropoda melanoleuca	72.83	0.00e+00	1137.00
IUUC-Atr-002603	Amborella trichopoda	34.80	2.00e-50	194.00
IUUC-Apl-003819	Anas platyrhynchos	66.26	0.00e+00	978.00
IUUC-Aly-006276	Arabidopsis lyrata	36.74	6.00e-53	202.00
IUUC-Ath-006667	Arabidopsis thaliana	35.52	8.00e-52	198.00
IUUC-Ame-011845	Astyanax mexicanus	63.56	0.00e+00	936.00
IUUC-Bta-012600	Bos taurus	73.58	0.00e+00	1118.00
IUUC-Bci-013703	Botrytis cinerea	30.20	3.00e-11	63.20
IUUC-Bdi-014586	Brachypodium distachyon	36.34	6.00e-48	186.00
IUUC-Bol-015519	Brassica oleracea	34.79	4.00e-51	196.00
IUUC-Bra-017110	Brassica rapa	35.04	1.00e-51	197.00
IUUC-Cja-018864	Callithrix jacchus	73.91	0.00e+00	1180.00
IUUC-Cfa-020558	Canis familiaris	73.77	0.00e+00	1140.00
IUUC-Cpo-022125	Cavia porcellus	75.51	0.00e+00	1195.00
IUUC-Cre-022645	Chlamydomonas reinhardtii	31.99	2.00e-20	94.40
IUUC-Csa-023649	Chlorocebus sabaeus	71.00	0.00e+00	1127.00
IUUC-Cin-025454	Ciona intestinalis	51.09	0.00e+00	725.00
IUUC-Cgl-026498	Colletotrichum gloeosporioides	31.25	3.00e-11	63.50
IUUC-Cne-026942	Cryptococcus neoformans	46.63	2.00e-29	121.00
IUUC-Dre-028200	Danio rerio	63.13	0.00e+00	972.00
IUUC-Dno-029523	Dasypus novemcinctus	73.81	0.00e+00	852.00
IUUC-Dor-031084	Dipodomys ordii	76.04	0.00e+00	1210.00
IUUC-Eca-033266	Equus caballus	73.83	0.00e+00	1125.00
IUUC-Eeu-035077	Erinaceus europaeus	63.40	5.00e-144	503.00
IUUC-Fca-035685	Felis catus	63.57	0.00e+00	996.00
IUUC-Fal-037550	Ficedula albicollis	66.12	0.00e+00	922.00
IUUC-Gmo-039452	Gadus morhua	61.38	0.00e+00	936.00
IUUC-Ggr-039874	Gaeumannomyces graminis	29.38	3.00e-09	57.00
IUUC-Gga-040484	Gallus gallus	66.75	0.00e+00	1062.00
IUUC-Gac-042196	Gasterosteus aculeatus	61.88	0.00e+00	944.00
IUUC-Ggo-045414	Gorilla gorilla	73.76	0.00e+00	1183.00
IUUC-Hsa-046236	Homo sapiens	73.88	0.00e+00	1184.00
IUUC-Hvu-047471	Hordeum vulgare	37.34	1.00e-45	177.00
IUUC-Itr-047867	Ictidomys tridecemlineatus	74.02	0.00e+00	1146.00
IUUC-Lch-050162	Latimeria chalumnae	59.52	0.00e+00	897.00
IUUC-Lpe-050756	Leersia perrieri	34.38	4.00e-44	172.00
IUUC-Loc-051806	Lepisosteus oculatus	63.92	0.00e+00	976.00
IUUC-Lma-052953	Leptosphaeria maculans	31.40	9.00e-11	62.00
IUUC-Laf-053671	Loxodonta africana	72.41	0.00e+00	1135.00
IUUC-Mcc-055513	Macaca mulatta	74.87	0.00e+00	1192.00
IUUC-Mpo-057318	Magnaporthe poae	30.72	5.00e-09	55.80
IUUC-Mtr-057930	Medicago truncatula	33.58	1.00e-48	187.00
IUUC-Mla-058836	Melampsora laricipopulina	41.85	2.00e-32	133.00
IUUC-Mga-059759	Meleagris gallopavo	65.86	0.00e+00	955.00
IUUC-Mvi-060378	Microbotryum violaceum	49.18	2.00e-34	139.00
IUUC-Mmr-060600	Microcebus murinus	68.60	0.00e+00	996.00
IUUC-Mdo-061911	Monodelphis domestica	68.35	0.00e+00	1048.00
IUUC-Mmu-063738	Mus musculus	93.48	0.00e+00	1459.00
IUUC-Mac-064788	Musa acuminata	35.84	7.00e-47	182.00
IUUC-Mpu-065696	Mustela putorius furo	72.29	0.00e+00	1120.00
IUUC-Mlu-067538	Myotis lucifugus	67.11	0.00e+00	1079.00
IUUC-Opr-070813	Ochotona princeps	61.57	2.00e-155	542.00
IUUC-Ont-072292	Oreochromis niloticus	62.64	0.00e+00	940.00
IUUC-Oba-075108	Oryza barthii	34.33	1.00e-44	174.00
IUUC-Obr-076572	Oryza brachyantha	33.90	2.00e-44	174.00
IUUC-Ogl-077177	Oryza glaberrima	34.33	1.00e-44	174.00
IUUC-Ogu-078298	Oryza glumaepatula	34.33	1.00e-44	174.00
IUUC-Oin-079911	Oryza indica	34.33	2.00e-44	174.00
IUUC-Oni-082510	Oryza nivara	35.03	2.00e-43	171.00
IUUC-Opu-083974	Oryza punctata	34.24	1.00e-44	175.00
IUUC-Oru-084985	Oryza rufipogon	35.03	2.00e-43	171.00
IUUC-Osa-085339	Oryza sativa	34.33	1.00e-44	174.00
IUUC-Ola-086416	Oryzias latipes	61.38	0.00e+00	930.00
IUUC-Oga-088221	Otolemur garnettii	73.95	0.00e+00	1175.00
IUUC-Oar-089604	Ovis aries	69.69	0.00e+00	1018.00
IUUC-Ptr-090559	Pan troglodytes	73.82	0.00e+00	1183.00
IUUC-Pan-092855	Papio anubis	75.00	0.00e+00	1191.00
IUUC-Psi-093763	Pelodiscus sinensis	69.15	0.00e+00	766.00
IUUC-Pma-094339	Petromyzon marinus	59.75	0.00e+00	868.00
IUUC-Ppa-095940	Physcomitrella patens	36.75	3.00e-51	197.00
IUUC-Pfo-096243	Poecilia formosa	61.43	0.00e+00	924.00
IUUC-Pab-098243	Pongo abelii	73.38	0.00e+00	1160.00
IUUC-Pop-099561	Populus trichocarpa	35.37	8.00e-52	198.00
IUUC-Pca-100503	Procavia capensis	68.25	0.00e+00	1059.00
IUUC-Ppe-101961	Prunus persica	36.91	5.00e-50	192.00
IUUC-Pva-102240	Pteropus vampyrus	70.11	0.00e+00	897.00
IUUC-Pgr-103644	Puccinia graminis	47.85	1.00e-32	134.00
IUUC-Ptt-103867	Puccinia triticina	45.11	3.00e-33	136.00
IUUC-Sha-106618	Sarcophilus harrisii	68.80	0.00e+00	1053.00
IUUC-Smo-109556	Selaginella moellendorffii	37.76	3.00e-44	173.00
IUUC-Sit-110588	Setaria italica	35.98	2.00e-46	181.00
IUUC-Sly-111415	Solanum lycopersicum	35.11	2.00e-52	200.00
IUUC-Stu-112842	Solanum tuberosum	35.27	2.00e-52	201.00
IUUC-Sar-113651	Sorex araneus	67.34	9.00e-81	294.00
IUUC-Sbi-114726	Sorghum bicolor	34.22	7.00e-46	179.00
IUUC-Sre-115182	Sporisorium reilianum	46.47	6.00e-35	141.00
IUUC-Ssc-116081	Sus scrofa	69.72	0.00e+00	1112.00
IUUC-Tgu-116538	Taeniopygia guttata	69.10	0.00e+00	870.00
IUUC-Tru-117599	Takifugu rubripes	60.93	0.00e+00	919.00
IUUC-Tca-121781	Theobroma cacao	33.59	2.00e-47	183.00
IUUC-Tae-124962	Triticum aestivum	35.81	7.00e-46	179.00
IUUC-Tme-127149	Tuber melanosporum	49.42	2.00e-27	117.00
IUUC-Ttr-128522	Tursiops truncatus	72.77	0.00e+00	1150.00
IUUC-Vvi-131413	Vitis vinifera	34.47	2.00e-49	190.00
IUUC-Xtr-132432	Xenopus tropicalis	62.93	0.00e+00	988.00
IUUC-Xma-133516	Xiphophorus maculatus	62.36	0.00e+00	947.00
IUUC-Zma-135894	Zea mays	35.97	5.00e-47	182.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence