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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Rno-105417
UUCD1 version UUC-RaN-00586
Ensembl Protein ID ENSRNOP00000018921.5
UniProt Accession F1LZZ1; F1LZZ1_RAT
Genbank Protein ID ENSRNOP00000018921
Protein Name WD repeat domain 38
Genbank Nucleotide ID AABR07051827
Gene Name Wdr38
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000014102.7 ENSRNOT00000018921.6 ENSRNOP00000018921.5
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.60e-48 160.9 57 95
UBD/Beta-Prp 4.80e-76 256.2 19 177
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
    gH+++v +++f +d +l++s+s D+ti++WD+ + ++l+
   Q: 57 GHKGPVKSCRFsPDgRLVASSSCDHTIRLWDVAKAKCLH 95
    8***********999999***************999987 PP
   


   UBD/Beta-Prp

   S: 12   vitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsl 100
    ++c +fspd++ l+t+s+dg++ vw +++g ll++l gh+++v++++fspdg + +++s D+ti++wd+ + kc+h+lkgh++sv ++
   Q: 19 EVNCSAFSPDGRNLITASDDGCVYVWGTKSGRLLWRLAGHKGPVKSCRFSPDGRLVASSSCDHTIRLWDVAKAKCLHVLKGHQRSVETV 107
    5789************************************************************************************* PP
   S: 101 sfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkl 171
    sfsp+++ l+sG++d+ + +w++++g ++ +l gh +++++ ++p+++ l++Gs D+tv +Wdl+ +
   Q: 108 SFSPDSKQLASGGWDKRVILWEVQSGRNVR-FLPGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASSP 177
    ******************************.***********************************98765 PP
   

Organism Rattus norvegicus
Protein Sequence
(Fasta)
MEELSHLPMP HPPGACFSEV NCSAFSPDGR NLITASDDGC VYVWGTKSGR LLWRLAGHKG 60
PVKSCRFSPD GRLVASSSCD HTIRLWDVAK AKCLHVLKGH QRSVETVSFS PDSKQLASGG 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Rno-105417|E3,WD_repeat;UBD,Beta-Prp|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGGAATCCTT GAATTTGACA CTCCCAAAGT TCTGCTGCCC TAGCCAACAC CATTGGGCCT 60
CCCACATCTG TCCGTGCCCA CTTTGGTCTG GTTGGGAAGC TGGCAGGCTT GGTTCTGGTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Rno-105417|E3,WD_repeat;UBD,Beta-Prp|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0002244--P:hematopoietic progenitor cell differentiation

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001664 Ailuropoda melanoleuca 77.98 1.00e-125 442.00
IUUC-Ame-010858 Astyanax mexicanus 50.00 3.00e-72 265.00
IUUC-Bta-012352 Bos taurus 75.18 7.00e-121 426.00
IUUC-Cja-019585 Callithrix jacchus 76.53 3.00e-126 444.00
IUUC-Cfa-020062 Canis familiaris 71.89 2.00e-113 402.00
IUUC-Csa-023528 Chlorocebus sabaeus 78.34 3.00e-127 447.00
IUUC-Cin-025426 Ciona intestinalis 36.99 1.00e-50 193.00
IUUC-Dre-027740 Danio rerio 51.09 5.00e-44 170.00
IUUC-Dno-030012 Dasypus novemcinctus 64.15 3.00e-112 397.00
IUUC-Dor-030536 Dipodomys ordii 74.89 1.00e-96 346.00
IUUC-Ete-032871 Echinops telfairi 73.71 1.00e-94 338.00
IUUC-Eca-033729 Equus caballus 77.74 7.00e-125 439.00
IUUC-Eeu-034740 Erinaceus europaeus 74.45 3.00e-118 417.00
IUUC-Fca-036514 Felis catus 76.53 4.00e-124 437.00
IUUC-Ggo-044793 Gorilla gorilla 76.17 1.00e-122 432.00
IUUC-Hsa-046414 Homo sapiens 78.42 8.00e-126 442.00
IUUC-Itr-048798 Ictidomys tridecemlineatus 72.89 1.00e-107 382.00
IUUC-Lch-049905 Latimeria chalumnae 52.55 3.00e-82 298.00
IUUC-Loc-052101 Lepisosteus oculatus 52.55 1.00e-78 286.00
IUUC-Laf-053443 Loxodonta africana 71.84 3.00e-113 401.00
IUUC-Mcc-055346 Macaca mulatta 77.98 4.00e-127 447.00
IUUC-Meu-056531 Macropus eugenii 63.09 4.00e-79 286.00
IUUC-Mmr-061721 Microcebus murinus 76.28 3.00e-121 427.00
IUUC-Mdo-062379 Monodelphis domestica 62.18 7.00e-97 347.00
IUUC-Mmu-064175 Mus musculus 87.77 4.00e-142 497.00
IUUC-Mpu-066361 Mustela putorius furo 77.74 3.00e-124 437.00
IUUC-Mlu-067300 Myotis lucifugus 54.84 1.00e-75 276.00
IUUC-Nle-070150 Nomascus leucogenys 77.09 9.00e-123 432.00
IUUC-Opr-071060 Ochotona princeps 66.79 2.00e-93 335.00
IUUC-Ocu-074101 Oryctolagus cuniculus 76.17 4.00e-121 427.00
IUUC-Oga-088479 Otolemur garnettii 76.92 2.00e-123 434.00
IUUC-Oar-089608 Ovis aries 75.28 3.00e-120 425.00
IUUC-Ptr-091521 Pan troglodytes 78.70 5.00e-127 446.00
IUUC-Pan-092092 Papio anubis 78.34 3.00e-127 447.00
IUUC-Pab-098454 Pongo abelii 78.34 7.00e-128 449.00
IUUC-Pca-100981 Procavia capensis 75.45 3.00e-120 424.00
IUUC-Pva-102491 Pteropus vampyrus 77.45 3.00e-125 441.00
IUUC-Sha-107649 Sarcophilus harrisii 64.23 5.00e-100 357.00
IUUC-Sar-113110 Sorex araneus 61.59 2.00e-73 268.00
IUUC-Ssc-116197 Sus scrofa 74.37 4.00e-120 424.00
IUUC-Tbe-127734 Tupaia belangeri 74.70 3.00e-71 261.00
IUUC-Ttr-128709 Tursiops truncatus 71.06 1.00e-110 392.00
Created Date 25-Jun-2017

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