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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Hsa-047030
UUCD1 version UUC-HoS-00074
Ensembl Protein ID ENSP00000309457.4
UniProt Accession P49754; E9PF36; Q86TP8; Q99851; Q99852; VPS41_HUMAN
Genbank Protein ID AAB47758.1; AAB47563.1; AAH44851.1; AAC42004.1
Protein Name Vacuolar protein sorting-associated protein 41 homolog; S53
Genbank Nucleotide ID U87281; U87309; AC004850; L40398
Gene Name VPS41
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSG00000006715.15 ENST00000310301.8 ENSP00000309457.4
ENSG00000006715.15 ENST00000395969.6 ENSP00000379297.2
ENSG00000006715.15 ENST00000448833.5 ENSP00000391980.1
ENSG00000006715.15 ENST00000439468.1 ENSP00000395410.1
ENSG00000006715.15 ENST00000413141.5 ENSP00000412974.1
ENSG00000006715.15 ENST00000265745.13 ENSP00000265745.9
ENSG00000006715.15 ENST00000414632.5 ENSP00000411919.1
ENSG00000006715.15 ENST00000418457.6 ENSP00000407835.2
Annotation
Cancer Mutation
TCGAICGCCOSMICCGAP
IntOGen
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressTCGAICGC
COSMICTHPAHPM
DNA & RNA Element
UTRdbAREsitecircBasecircRNADb
CircNetmiRTarBasemicroRNATRANSFAC
TargetScanRepTarSomamiRmiRcode
RAID2
Protein-protein Interaction
IIDiRefIndexPINAHINT
MenthaInWeb_IM
Disease-associated Information
GWASdbOMIM
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlusdbPTM
HPRDBioGRIDmUbiSiDa
DNA Methylation
TCGAICGCCOSMIC
Protein Expression/Proteomics
THPAHPMGPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/RING/RING RING 19690564
Classification
Family E-value Score Start End
E3 activity/RING/RING 0.13 14.5 791 838
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/RING

   S: 1    CaiCledf........kdgplvlpCgHvfhadClqkwpglknssskefrCPlC 45
    C Cl+++ + ++v C H+fh++Cl ++++ s ++ C +C
   Q: 791 CESCLSPIlpsdaakpFS-VVVFHCRHMFHKECL----PMPSMNSAAQFCNIC 838
    667888777776633333.66677*********9....444455555559999 PP
   

Organism Homo sapiens
Functional Description
(View)

Functional Description



     Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act in part as a core component of the putative HOPS endosomal tethering complex is proposed to be involved in the Rab5-to-Rab7 endosome conversion probably implicating MON1A/B, and via binding SNAREs and SNARE complexes to mediate tethering and docking events during SNARE-mediated membrane fusion. The HOPS complex is proposed to be recruited to Rab7 on the late endosomal membrane and to regulate late endocytic, phagocytic and autophagic traffic towards lysosomes (PubMed:23351085). Involved in homotypic vesicle fusions between late endosomes and in heterotypic fusions between late endosomes and lysosomes implicated in degradation of endocytosed cargo (PubMed:9159129, PubMed:23167963, PubMed:25445562, PubMed:25908847). Required for fusion of autophagosomes with lysosomes (PubMed:25783203). May link the HOPS complex to endosomal Rab7 via its association with RILP and to lysosomal membranes via its association with ARL8B, suggesting that these interactions may bring the compartments to close proximity for fusion (PubMed:25445562, PubMed:25908847). Involved in the direct trans-Golgi network to late endosomes transport of lysosomal membrane proteins independently of HOPS (PubMed:23322049). Involved in sorting to the regulated secretory pathway presumably implicating the AP-3 adaptor complex (By similarity). May play a role in HOPS-independent function in the regulated secretory pathway (PubMed:24210660).
Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act in part as a core component of the putative HOPS endosomal tethering complex is proposed to be involved in the Rab5-to-Rab7 endosome conversion probably implicating MON1A/B, and via binding SNAREs and SNARE complexes to mediate tethering and docking events during SNARE-mediated membrane fusion. The HOPS complex is proposed to be recruited to Rab7 on the late endosomal membrane and to regulate late endocytic, phagocytic and autophagic traffic towards lysosomes (PubMed:23351085). Involved in homotypic vesicle fusions between late endosomes and in heterotypic fusions between late endosomes and lysosomes implicated in degradation of endocytosed cargo (PubMed:9159129, PubMed:23167963, PubMed:25445562, PubMed:25908847). Required for fusion of autophagosomes with lysosomes (PubMed:25783203). May link the HOPS complex to endosomal Rab7 via its association with RILP and to lysosomal membranes via its association with ARL8B, suggesting that these interactions may bring the compartments to close proximity for fusion (PubMed:25445562, PubMed:25908847). Involved in the direct trans-Golgi network to late endosomes transport of lysosomal membrane proteins independently of HOPS (PubMed:23322049). Involved in sorting to the regulated secretory pathway presumably implicating the AP-3 adaptor complex (By similarity). May play a role in HOPS-independent function in the regulated secretory pathway (PubMed:24210660).
Protein Sequence
(Fasta)
MAEAEEQETG SLEESTDESE EEESEEEPKL KYERLSNGVT EILQKDAASC MTVHDKFLAL 60
GTHYGKVYLL DVQGNITQKF DVSPVKINQI SLDESGEHMG VCSEDGKVQV FGLYSGEEFH 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Hsa-047030|E3,RING|Homo sapiens
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ACATTTGCTT TTGCTAAGGG CACACTTGGC TTTTTAGGTT GTGCCTTTCC TCTATTCTAC 60
TTAAGTCAAG CACTAAGAAA TCTACTGTAA ATTCTGGACT TTCCACCATG TTTTCAGGTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Hsa-047030|E3,RING|Homo sapiens
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0072--Autophagy
KW-0181--Complete proteome
KW-0968--Cytoplasmic vesicle
KW-0967--Endosome
KW-0333--Golgi apparatus
KW-0458--Lysosome
KW-0472--Membrane
KW-0479--Metal-binding
KW-0621--Polymorphism
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR000547--Clathrin_H-chain/VPS_repeat
IPR011990--TPR-like_helical_dom
IPR016902--VPS41
IPR015943--WD40/YVTN_repeat-like_dom
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50236--CHCR
PS50089--ZF_RING_2

Pfam

PF00637--Clathrin

SMART

SM00299--CLH

Gene Ontology

GO:0030123--C:AP-3 adaptor complex
GO:0030136--C:clathrin-coated vesicle
GO:0033263--C:CORVET complex
GO:0005829--C:cytosol
GO:0005769--C:early endosome
GO:0010008--C:endosome membrane
GO:0005798--C:Golgi-associated vesicle
GO:0030897--C:HOPS complex
GO:0031902--C:late endosome membrane
GO:0005765--C:lysosomal membrane
GO:0016020--C:membrane
GO:0015630--C:microtubule cytoskeleton
GO:0051020--F:GTPase binding
GO:0042802--F:identical protein binding
GO:0008270--F:zinc ion binding
GO:0006914--P:autophagy
GO:0034058--P:endosomal vesicle fusion
GO:0008333--P:endosome to lysosome transport
GO:0048193--P:Golgi vesicle transport
GO:1902774--P:late endosome to lysosome transport
GO:0006623--P:protein targeting to vacuole
GO:0045055--P:regulated exocytosis
GO:0035542--P:regulation of SNARE complex assembly
GO:0042144--P:vacuole fusion, non-autophagic

KEGG hsa:27072
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000207 Aegilops tauschii 34.73 1.00e-135 477.00
IUUC-Aml-001435 Ailuropoda melanoleuca 97.46 0.00e+00 1679.00
IUUC-Atr-002975 Amborella trichopoda 37.07 1.00e-161 564.00
IUUC-Apl-003254 Anas platyrhynchos 91.75 0.00e+00 1596.00
IUUC-Aca-005067 Anolis carolinensis 89.11 0.00e+00 1563.00
IUUC-Aly-005839 Arabidopsis lyrata 35.97 3.00e-158 553.00
IUUC-Ath-006625 Arabidopsis thaliana 35.86 1.00e-158 553.00
IUUC-Ago-007960 Ashbya gossypii 25.39 4.00e-69 256.00
IUUC-Acl-008174 Aspergillus clavatus 29.91 6.00e-55 209.00
IUUC-Afl-008524 Aspergillus flavus 42.22 6.00e-38 153.00
IUUC-Afu-009054 Aspergillus fumigatus 28.59 1.00e-58 222.00
IUUC-Ani-009250 Aspergillus nidulans 27.53 6.00e-47 183.00
IUUC-Ang-009665 Aspergillus niger 29.14 3.00e-57 218.00
IUUC-Aor-010230 Aspergillus oryzae 42.22 7.00e-38 153.00
IUUC-Ate-010464 Aspergillus terreus 40.86 1.00e-39 159.00
IUUC-Ame-011311 Astyanax mexicanus 67.30 0.00e+00 1134.00
IUUC-Bgr-012099 Blumeria graminis 26.72 2.00e-49 192.00
IUUC-Bta-013327 Bos taurus 97.66 0.00e+00 1687.00
IUUC-Bci-013660 Botrytis cinerea 27.75 2.00e-50 194.00
IUUC-Bdi-014641 Brachypodium distachyon 36.21 2.00e-147 517.00
IUUC-Bol-015685 Brassica oleracea 35.86 9.00e-159 554.00
IUUC-Bra-016918 Brassica rapa 35.53 2.00e-157 549.00
IUUC-Cel-018385 Caenorhabditis elegans 28.45 3.00e-91 330.00
IUUC-Cja-018994 Callithrix jacchus 99.27 0.00e+00 1699.00
IUUC-Cfa-020405 Canis familiaris 97.82 0.00e+00 1681.00
IUUC-Cpo-022163 Cavia porcellus 97.22 0.00e+00 1666.00
IUUC-Cre-022626 Chlamydomonas reinhardtii 28.61 2.00e-41 164.00
IUUC-Csa-023134 Chlorocebus sabaeus 99.65 0.00e+00 1714.00
IUUC-Cho-024913 Choloepus hoffmanni 85.59 0.00e+00 1386.00
IUUC-Cin-025239 Ciona intestinalis 44.44 0.00e+00 718.00
IUUC-Cgl-026706 Colletotrichum gloeosporioides 29.29 2.00e-53 204.00
IUUC-Cne-026799 Cryptococcus neoformans 36.80 1.00e-163 570.00
IUUC-Cme-027200 Cyanidioschyzon merolae 24.10 3.00e-10 61.20
IUUC-Dre-028115 Danio rerio 82.20 0.00e+00 1437.00
IUUC-Dor-030947 Dipodomys ordii 91.33 0.00e+00 1549.00
IUUC-Dse-031544 Dothistroma septosporum 27.93 2.00e-45 178.00
IUUC-Dme-031830 Drosophila melanogaster 38.00 1.00e-155 543.00
IUUC-Ete-033051 Echinops telfairi 93.80 1.00e-143 504.00
IUUC-Eca-033501 Equus caballus 98.19 0.00e+00 1690.00
IUUC-Eeu-034555 Erinaceus europaeus 91.97 0.00e+00 888.00
IUUC-Fca-035809 Felis catus 96.96 0.00e+00 1675.00
IUUC-Fal-037056 Ficedula albicollis 92.50 0.00e+00 1600.00
IUUC-Fox-037949 Fusarium oxysporum 27.85 2.00e-48 188.00
IUUC-Fso-038282 Fusarium solani 26.78 1.00e-44 176.00
IUUC-Gmo-038540 Gadus morhua 81.14 0.00e+00 1400.00
IUUC-Ggr-039733 Gaeumannomyces graminis 29.25 3.00e-52 201.00
IUUC-Gga-040446 Gallus gallus 92.04 0.00e+00 1599.00
IUUC-Gac-041462 Gasterosteus aculeatus 81.62 0.00e+00 1414.00
IUUC-Gma-043148 Glycine max 36.59 8.00e-164 571.00
IUUC-Hvu-047693 Hordeum vulgare 36.08 2.00e-148 520.00
IUUC-Itr-048318 Ictidomys tridecemlineatus 97.15 0.00e+00 1666.00
IUUC-Kpa-049224 Komagataella pastoris 23.99 5.00e-55 209.00
IUUC-Lch-049444 Latimeria chalumnae 81.47 0.00e+00 1383.00
IUUC-Lpe-050942 Leersia perrieri 33.94 9.00e-129 454.00
IUUC-Loc-052260 Lepisosteus oculatus 81.52 0.00e+00 1432.00
IUUC-Lma-053173 Leptosphaeria maculans 26.97 2.00e-49 191.00
IUUC-Laf-054185 Loxodonta africana 97.46 0.00e+00 1677.00
IUUC-Mcc-054816 Macaca mulatta 99.65 0.00e+00 1714.00
IUUC-Meu-056483 Macropus eugenii 73.38 0.00e+00 652.00
IUUC-Mor-056979 Magnaporthe oryzae 27.39 1.00e-52 202.00
IUUC-Mpo-057312 Magnaporthe poae 29.35 9.00e-52 199.00
IUUC-Mtr-057630 Medicago truncatula 36.20 9.00e-161 561.00
IUUC-Mla-058930 Melampsora laricipopulina 32.76 2.00e-24 105.00
IUUC-Mga-059942 Meleagris gallopavo 91.91 0.00e+00 1585.00
IUUC-Mvi-060386 Microbotryum violaceum 36.19 5.00e-158 552.00
IUUC-Mmr-060640 Microcebus murinus 99.03 0.00e+00 1701.00
IUUC-Mdo-062934 Monodelphis domestica 85.59 0.00e+00 1429.00
IUUC-Mmu-063488 Mus musculus 97.34 0.00e+00 1686.00
IUUC-Mac-064975 Musa acuminata 37.19 1.00e-156 546.00
IUUC-Mpu-065777 Mustela putorius furo 98.07 0.00e+00 1685.00
IUUC-Mlu-068052 Myotis lucifugus 97.10 0.00e+00 1670.00
IUUC-Nfi-068436 Neosartorya fischeri 28.87 8.00e-60 226.00
IUUC-Ncr-068840 Neurospora crassa 29.32 4.00e-58 220.00
IUUC-Nle-070063 Nomascus leucogenys 99.65 0.00e+00 1707.00
IUUC-Opr-070385 Ochotona princeps 87.55 0.00e+00 1456.00
IUUC-Ont-072367 Oreochromis niloticus 81.40 0.00e+00 1407.00
IUUC-Oan-073085 Ornithorhynchus anatinus 91.67 0.00e+00 1575.00
IUUC-Ocu-074672 Oryctolagus cuniculus 98.07 0.00e+00 1686.00
IUUC-Oba-075574 Oryza barthii 36.54 4.00e-154 538.00
IUUC-Obr-076203 Oryza brachyantha 36.55 1.00e-153 537.00
IUUC-Ogl-077909 Oryza glaberrima 36.54 4.00e-154 538.00
IUUC-Ogu-078053 Oryza glumaepatula 36.13 2.00e-151 530.00
IUUC-Oin-079700 Oryza indica 36.54 5.00e-154 538.00
IUUC-Olo-080707 Oryza longistaminata 37.18 3.00e-160 559.00
IUUC-Oni-082754 Oryza nivara 36.47 4.00e-153 535.00
IUUC-Opu-083854 Oryza punctata 36.47 5.00e-153 535.00
IUUC-Oru-085071 Oryza rufipogon 36.24 4.00e-152 532.00
IUUC-Osa-085370 Oryza sativa 36.54 4.00e-154 538.00
IUUC-Ola-086362 Oryzias latipes 79.27 0.00e+00 1373.00
IUUC-Oga-088078 Otolemur garnettii 98.29 0.00e+00 1677.00
IUUC-Oar-089679 Ovis aries 97.78 0.00e+00 1689.00
IUUC-Ptr-091680 Pan troglodytes 100.00 0.00e+00 1718.00
IUUC-Pan-092816 Papio anubis 100.00 0.00e+00 1220.00
IUUC-Psi-093890 Pelodiscus sinensis 91.10 0.00e+00 1595.00
IUUC-Pma-094654 Petromyzon marinus 65.30 0.00e+00 1123.00
IUUC-Pno-095071 Phaeosphaeria nodorum 28.24 5.00e-57 216.00
IUUC-Ppa-095198 Physcomitrella patens 34.62 1.00e-145 510.00
IUUC-Pfo-097465 Poecilia formosa 80.09 0.00e+00 1391.00
IUUC-Pab-098686 Pongo abelii 99.88 0.00e+00 1716.00
IUUC-Pop-100066 Populus trichocarpa 36.35 8.00e-162 564.00
IUUC-Pca-100990 Procavia capensis 87.30 0.00e+00 1461.00
IUUC-Ppe-101500 Prunus persica 37.00 1.00e-163 570.00
IUUC-Pva-102809 Pteropus vampyrus 97.54 0.00e+00 1688.00
IUUC-Pgr-103404 Puccinia graminis 32.97 2.00e-143 503.00
IUUC-Ptt-103952 Puccinia triticina 31.74 3.00e-132 466.00
IUUC-Pte-104216 Pyrenophora teres 28.10 6.00e-57 216.00
IUUC-Rno-105949 Rattus norvegicus 97.42 0.00e+00 1496.00
IUUC-Sce-106462 Saccharomyces cerevisiae 24.79 8.00e-58 219.00
IUUC-Sha-106689 Sarcophilus harrisii 93.23 0.00e+00 1624.00
IUUC-Sja-107696 Schizosaccharomyces japonicus 30.15 2.00e-97 350.00
IUUC-Spo-108173 Schizosaccharomyces pombe 29.31 6.00e-105 375.00
IUUC-Smo-109505 Selaginella moellendorffii 37.00 2.00e-149 523.00
IUUC-Sit-110176 Setaria italica 36.38 1.00e-158 553.00
IUUC-Sly-111671 Solanum lycopersicum 34.89 4.00e-162 565.00
IUUC-Sar-113073 Sorex araneus 83.33 0.00e+00 1290.00
IUUC-Sbi-114139 Sorghum bicolor 37.19 1.00e-152 534.00
IUUC-Sre-115158 Sporisorium reilianum 36.01 1.00e-166 580.00
IUUC-Ssc-115894 Sus scrofa 95.78 0.00e+00 1652.00
IUUC-Tgu-117481 Taeniopygia guttata 92.14 0.00e+00 1597.00
IUUC-Tru-118468 Takifugu rubripes 79.55 0.00e+00 1382.00
IUUC-Tni-120478 Tetraodon nigroviridis 78.96 0.00e+00 1376.00
IUUC-Tca-121780 Theobroma cacao 36.43 3.00e-161 562.00
IUUC-Tre-121900 Trichoderma reesei 28.15 7.00e-55 209.00
IUUC-Tvi-122343 Trichoderma virens 27.87 3.00e-55 211.00
IUUC-Tae-123578 Triticum aestivum 36.61 6.00e-151 528.00
IUUC-Tur-126430 Triticum urartu 35.84 1.00e-142 500.00
IUUC-Tme-127007 Tuber melanosporum 29.07 2.00e-61 231.00
IUUC-Tbe-128073 Tupaia belangeri 89.11 0.00e+00 1509.00
IUUC-Ttr-128879 Tursiops truncatus 97.19 0.00e+00 1669.00
IUUC-Uma-129356 Ustilago maydis 35.49 3.00e-167 583.00
IUUC-Vda-129676 Verticillium dahliae 28.89 3.00e-54 207.00
IUUC-Vvi-131744 Vitis vinifera 36.03 2.00e-159 556.00
IUUC-Xtr-132093 Xenopus tropicalis 81.26 0.00e+00 1397.00
IUUC-Xma-133199 Xiphophorus maculatus 80.91 0.00e+00 1390.00
IUUC-Yli-134385 Yarrowia lipolytica 27.05 9.00e-76 278.00
IUUC-Zma-135567 Zea mays 36.93 6.00e-150 525.00
Created Date 25-Jun-2017

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