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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Mmu-063939
Ensembl Protein ID ENSMUSP00000042433.5
UniProt Accession Q6Q899; A2AP28; Q8C320; Q8C5I3; Q8C7T2; DDX58_MOUSE
Genbank Protein ID AAS59532.1; CAM27574.1; EDL05445.1; BAC33670.1; BAC37205.1; BAC39830.1
Protein Name Probable ATP-dependent RNA helicase DDX58; DEAD box protein 58; RIG-I-like receptor 1; Retinoic acid-inducible gene 1 protein; Retinoic acid-inducible gene I protein
Genbank Nucleotide ID AY553221; AL831793; CH466538; AK049305; AK078287; AK087261
Gene Name Ddx58
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMUSG00000040296.15 ENSMUST00000037907.12 ENSMUSP00000042433.5
ENSMUSG00000040296.15 ENSMUST00000142055.1 ENSMUSP00000115052.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressGXD
DNA & RNA Element
AREsitemiRTarBasemicroRNATRANSFAC
RepTarRAID2
Protein-protein Interaction
IIDiRefIndexPINAHINT
Mentha
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlusBioGRID
mUbiSiDa
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/CARD 2.30e-44 150.9 1 74
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/CARD

   S: 1    tdeeyrlllstlqdrvrklLdvtdvldkylseflleeekelilaaaetkgnmqaaelLLktL..vqkegWfrefl 73
    ++ e+r+ l++++d+++k+Ld+t++l+ y+s +l ee+++i+a++++kg+m+aa l+L+ L +q egWf++fl
   Q: 1 MTAEQRQNLQAFRDYIKKILDPTYILS-YMSSWLEDEEVQYIQAEKNNKGPMEAASLFLQYLlkLQSEGWFQAFL 74
    5679***********************.*********************************************96 PP
   

Organism Mus musculus
Functional Description
(View)

Functional Description



     Innate immune receptor which acts as a cytoplasmic sensor of viral nucleic acids and plays a major role in sensing viral infection and in the activation of a cascade of antiviral responses including the induction of type I interferons and proinflammatory cytokines. Its ligands include: 5'-triphosphorylated ssRNA and dsRNA and short dsRNA (<1 kb in length). In addition to the 5'-triphosphate moiety, blunt-end base pairing at the 5'-end of the RNA is very essential. Overhangs at the non-triphosphorylated end of the dsRNA RNA have no major impact on its activity. A 3'overhang at the 5'triphosphate end decreases and any 5'overhang at the 5' triphosphate end abolishes its activity. Upon ligand binding it associates with mitochondria antiviral signaling protein (MAVS/IPS1) which activates the IKK-related kinases: TBK1 and IKBKE which phosphorylate interferon regulatory factors: IRF3 and IRF7 which in turn activate transcription of antiviral immunological genes, including interferons (IFNs); IFN-alpha and IFN-beta. Detects both positive and negative strand RNA viruses including members of the families Paramyxoviridae: newcastle disease virus (NDV) and Sendai virus (SeV), Rhabdoviridae: vesicular stomatitis virus (VSV), Orthomyxoviridae: influenza A and B virus, Flaviviridae: Japanese encephalitis virus (JEV), hepatitis C virus (HCV), dengue virus (DENV) and west Nile virus (WNV). It also detects rotavirus and orthoreovirus. Also involved in antiviral signaling in response to viruses containing a dsDNA genome such as Epstein-Barr virus (EBV). Detects dsRNA produced from non-self dsDNA by RNA polymerase III, such as Epstein-Barr virus-encoded RNAs (EBERs). May play important roles in granulocyte production and differentiation, bacterial phagocytosis and in the regulation of cell migration.
Innate immune receptor which acts as a cytoplasmic sensor of viral nucleic acids and plays a major role in sensing viral infection and in the activation of a cascade of antiviral responses including the induction of type I interferons and proinflammatory cytokines. Its ligands include: 5'-triphosphorylated ssRNA and dsRNA and short dsRNA (<1 kb in length). In addition to the 5'-triphosphate moiety, blunt-end base pairing at the 5'-end of the RNA is very essential. Overhangs at the non-triphosphorylated end of the dsRNA RNA have no major impact on its activity. A 3'overhang at the 5'triphosphate end decreases and any 5'overhang at the 5' triphosphate end abolishes its activity. Upon ligand binding it associates with mitochondria antiviral signaling protein (MAVS/IPS1) which activates the IKK-related kinases: TBK1 and IKBKE which phosphorylate interferon regulatory factors: IRF3 and IRF7 which in turn activate transcription of antiviral immunological genes, including interferons (IFNs); IFN-alpha and IFN-beta. Detects both positive and negative strand RNA viruses including members of the families Paramyxoviridae: newcastle disease virus (NDV) and Sendai virus (SeV), Rhabdoviridae: vesicular stomatitis virus (VSV), Orthomyxoviridae: influenza A and B virus, Flaviviridae: Japanese encephalitis virus (JEV), hepatitis C virus (HCV), dengue virus (DENV) and west Nile virus (WNV). It also detects rotavirus and orthoreovirus. Also involved in antiviral signaling in response to viruses containing a dsDNA genome such as Epstein-Barr virus (EBV). Detects dsRNA produced from non-self dsDNA by RNA polymerase III, such as Epstein-Barr virus-encoded RNAs (EBERs). May play important roles in granulocyte production and differentiation, bacterial phagocytosis and in the regulation of cell migration.
Protein Sequence
(Fasta)
MTAEQRQNLQ AFRDYIKKIL DPTYILSYMS SWLEDEEVQY IQAEKNNKGP MEAASLFLQY 60
LLKLQSEGWF QAFLDALYHA GYCGLCEAIE SWDFQKIEKL EEHRLLLRRL EPEFKATVDP 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Mmu-063939|UBD,CARD|Mus musculus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGCAGTTTCG ATTTCCTATG GCCAGCCGGC TAGGCAGCTT TTTCATCGGG ACTCCTTGGA 60
AAGTCCCCAC TTCGTTCATC TCTGGCGGAT TTGCGGGAGC CAGGGCGCTC ATCGATCGCC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mmu-063939|UBD,CARD|Mus musculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0007--Acetylation
KW-0025--Alternative splicing
KW-0051--Antiviral defense
KW-0067--ATP-binding
KW-0965--Cell junction
KW-1003--Cell membrane
KW-0966--Cell projection
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0347--Helicase
KW-0378--Hydrolase
KW-0391--Immunity
KW-0399--Innate immunity
KW-1017--Isopeptide bond
KW-0472--Membrane
KW-0479--Metal-binding
KW-0547--Nucleotide-binding
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0694--RNA-binding
KW-0796--Tight junction
KW-0832--Ubl conjugation
KW-0862--Zinc

Interpro

IPR031964--CARD_dom
IPR011029--DEATH-like_dom
IPR006935--Helicase/UvrB_N
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR021673--RLR_CTR

PROSITE

PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS51789--RLR_CTR

Pfam

PF16739--CARD_2
PF00271--Helicase_C
PF04851--ResIII
PF11648--RIG-I_C-RD

SMART

SM00487--DEXDc
SM00490--HELICc

Gene Ontology

GO:0015629--C:actin cytoskeleton
GO:0005923--C:bicellular tight junction
GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0032587--C:ruffle membrane
GO:0005524--F:ATP binding
GO:0003690--F:double-stranded DNA binding
GO:0003725--F:double-stranded RNA binding
GO:0004386--F:helicase activity
GO:0042802--F:identical protein binding
GO:0003727--F:single-stranded RNA binding
GO:0031625--F:ubiquitin protein ligase binding
GO:0008270--F:zinc ion binding
GO:0009597--P:detection of virus
GO:0045087--P:innate immune response
GO:0032480--P:negative regulation of type I interferon production
GO:0002230--P:positive regulation of defense response to virus by host
GO:0010628--P:positive regulation of gene expression
GO:0032725--P:positive regulation of granulocyte macrophage colony-stimulating factor production
GO:0032727--P:positive regulation of interferon-alpha production
GO:0032728--P:positive regulation of interferon-beta production
GO:0032755--P:positive regulation of interleukin-6 production
GO:0032757--P:positive regulation of interleukin-8 production
GO:0042993--P:positive regulation of transcription factor import into nucleus
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0030334--P:regulation of cell migration
GO:0043330--P:response to exogenous dsRNA
GO:0009615--P:response to virus
GO:0039529--P:RIG-I signaling pathway

KEGG mmu:230073
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001898 Ailuropoda melanoleuca 73.44 0.00e+00 1358.00
IUUC-Apl-003966 Anas platyrhynchos 52.84 0.00e+00 920.00
IUUC-Aca-004499 Anolis carolinensis 46.25 0.00e+00 795.00
IUUC-Ath-007558 Arabidopsis thaliana 31.94 1.10e+00 27.30
IUUC-Ani-009308 Aspergillus nidulans 31.88 1.50e+00 26.90
IUUC-Ame-011950 Astyanax mexicanus 43.27 0.00e+00 693.00
IUUC-Bta-012489 Bos taurus 72.27 0.00e+00 1302.00
IUUC-Cel-018230 Caenorhabditis elegans 29.29 3.00e-67 250.00
IUUC-Cja-018716 Callithrix jacchus 76.54 0.00e+00 1410.00
IUUC-Cfa-020269 Canis familiaris 74.38 0.00e+00 1387.00
IUUC-Cpo-022507 Cavia porcellus 74.33 0.00e+00 1381.00
IUUC-Csa-024209 Chlorocebus sabaeus 76.97 0.00e+00 1428.00
IUUC-Cho-025104 Choloepus hoffmanni 68.37 0.00e+00 1065.00
IUUC-Cin-025792 Ciona intestinalis 31.75 2.00e-81 296.00
IUUC-Cgl-026385 Colletotrichum gloeosporioides 26.05 6.00e-28 120.00
IUUC-Dno-028954 Dasypus novemcinctus 72.29 0.00e+00 1289.00
IUUC-Eca-034039 Equus caballus 74.70 0.00e+00 1373.00
IUUC-Eeu-035009 Erinaceus europaeus 65.14 0.00e+00 843.00
IUUC-Fca-036169 Felis catus 74.27 0.00e+00 1389.00
IUUC-Fal-037579 Ficedula albicollis 54.78 0.00e+00 911.00
IUUC-Fso-038398 Fusarium solani 25.19 2.00e-24 108.00
IUUC-Ggo-045318 Gorilla gorilla 75.31 0.00e+00 1294.00
IUUC-Hsa-046671 Homo sapiens 77.08 0.00e+00 1399.00
IUUC-Itr-047996 Ictidomys tridecemlineatus 74.21 0.00e+00 1340.00
IUUC-Lch-050461 Latimeria chalumnae 51.12 0.00e+00 865.00
IUUC-Loc-052582 Lepisosteus oculatus 46.72 0.00e+00 805.00
IUUC-Laf-054324 Loxodonta africana 72.88 0.00e+00 1319.00
IUUC-Mcc-055390 Macaca mulatta 76.22 0.00e+00 1410.00
IUUC-Meu-056365 Macropus eugenii 52.58 4.00e-170 592.00
IUUC-Mor-057000 Magnaporthe oryzae 23.81 3.10e-01 31.20
IUUC-Mpo-057328 Magnaporthe poae 23.81 2.00e-01 32.00
IUUC-Mmr-061407 Microcebus murinus 75.46 0.00e+00 1428.00
IUUC-Mpu-066226 Mustela putorius furo 73.58 0.00e+00 1268.00
IUUC-Mlu-068092 Myotis lucifugus 74.01 0.00e+00 1332.00
IUUC-Opr-070246 Ochotona princeps 63.25 3.00e-177 615.00
IUUC-Oan-072742 Ornithorhynchus anatinus 60.66 0.00e+00 969.00
IUUC-Ocu-073959 Oryctolagus cuniculus 72.00 0.00e+00 1347.00
IUUC-Oga-089173 Otolemur garnettii 73.59 0.00e+00 1348.00
IUUC-Oar-089369 Ovis aries 73.33 0.00e+00 1300.00
IUUC-Ptr-091032 Pan troglodytes 77.08 0.00e+00 1399.00
IUUC-Pan-092383 Papio anubis 76.78 0.00e+00 1421.00
IUUC-Psi-093432 Pelodiscus sinensis 55.22 0.00e+00 1033.00
IUUC-Pma-094367 Petromyzon marinus 42.66 8.00e-113 400.00
IUUC-Pab-098416 Pongo abelii 76.46 0.00e+00 1301.00
IUUC-Pca-101006 Procavia capensis 73.35 6.00e-169 588.00
IUUC-Pva-102966 Pteropus vampyrus 74.78 0.00e+00 1360.00
IUUC-Pgr-103529 Puccinia graminis 27.81 1.00e-28 122.00
IUUC-Rno-105059 Rattus norvegicus 89.00 0.00e+00 1061.00
IUUC-Ssl-108450 Sclerotinia sclerotiorum 28.57 8.00e-05 44.30
IUUC-Sar-113202 Sorex araneus 64.75 0.00e+00 974.00
IUUC-Ssc-116120 Sus scrofa 72.80 0.00e+00 1313.00
IUUC-Tgu-117314 Taeniopygia guttata 53.05 0.00e+00 926.00
IUUC-Tsy-119453 Tarsius syrichta 75.58 0.00e+00 783.00
IUUC-Ttr-128421 Tursiops truncatus 68.54 0.00e+00 1061.00
IUUC-Vpa-130602 Vicugna pacos 72.67 0.00e+00 1265.00
Created Date 25-Jun-2017

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