iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113876

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000762

Gene Name

SORBI_003G379800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g041930	Sb03g041930.1	Sb03g041930.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.30e-28	99.6	230	301

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +p++f+Cp+slelM+dPv++++G+ty+r  I+kwl+ g + cP+trq+l +++l+Pn+t+++li++w e ++
   Q: 230  IPADFCCPLSLELMSDPVIVATGQTYERVFIRKWLDLGYNVCPKTRQTLGHSNLIPNYTVKQLIENWSEIHG 301
           8******************************************************************98775 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MEESVPVSII SSISNFRTLS TSSVVETELV KRYCRKIDEI LGLLKLVLDE VLPQITLDDR 60
KILLLEELDA TINDAIKLVG SWDLMMSKIY FVMQVESLIT KMQNYVLEVC QVVNSEVTPP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGTTCACAC TCCTCTAGGC GCCTGAGGCC TCACGGTCTT CGTCCTCGCC CCCGCGTCGC 60
AGGCTCTCAG ACCCGCGTGG AGCTCACGGC GGCGACCGCC ATTGGACTAT TGGAGTTCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_03g041930

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cho-024990	Choloepus hoffmanni	31.08	3.00e-06	44.70
IUUC-Lpe-051098	Leersia perrieri	62.63	0.00e+00	888.00
IUUC-Oba-075779	Oryza barthii	63.86	0.00e+00	942.00
IUUC-Obr-076379	Oryza brachyantha	64.20	0.00e+00	936.00
IUUC-Ogl-077086	Oryza glaberrima	63.18	0.00e+00	932.00
IUUC-Ogu-078798	Oryza glumaepatula	63.31	0.00e+00	934.00
IUUC-Oin-079685	Oryza indica	62.84	0.00e+00	941.00
IUUC-Olo-080718	Oryza longistaminata	61.96	0.00e+00	874.00
IUUC-Oni-082536	Oryza nivara	62.84	0.00e+00	940.00
IUUC-Opu-083410	Oryza punctata	63.51	0.00e+00	931.00
IUUC-Oru-084460	Oryza rufipogon	62.84	0.00e+00	939.00
IUUC-Osa-086040	Oryza sativa	63.43	0.00e+00	935.00
IUUC-Ptt-103922	Puccinia triticina	31.48	2.00e-08	52.40
IUUC-Sit-110210	Setaria italica	79.31	0.00e+00	1159.00
IUUC-Tbe-127244	Tupaia belangeri	28.04	1.00e-09	57.40

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence