iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Lpe-051579

Ensembl Protein ID

LPERR02G07080.3

UniProt Accession

A0A0D9VDL8; A0A0D9VDL8_9ORYZ

Protein Name

Coatomer subunit beta'

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
LPERR02G07080	LPERR02G07080.1	LPERR02G07080.1
LPERR02G07080	LPERR02G07080.2	LPERR02G07080.2
LPERR02G07080	LPERR02G07080.3	LPERR02G07080.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.00e-34	117.0	184	225
UBD/Beta-Prp	3.40e-66	224.3	15	289

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l++GsdD t kvWD+ t  ++++
   Q: 184  GHSKGVNCVDYftgGDrPYLITGSDDQTAKVWDYQTKSCVQT 225
           8********966*9778*******************999986 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
           +++++++v+ +p +++++++ ++g++ +w+++t+++++s++  e +v++ kf+ ++++ v g++D++i+v++++t + v ++++h+d+++++++
   Q: 15   RSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV 108
           5678999*************************************************************************************** PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngk 193
           +p++ +++s s+d  i++wd+++g+   ++++gh++ v+ v+++p++ n ++s+slDrtv++W+l + +   tl g h + v++++     +++
   Q: 109  HPTQPFVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTVKVWSLGSPDPNFTLDG-HSKGVNCVDyfTGGDRP 201
           *************************9999**********************************************9.*********7445566* PP
   S: 194  elvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlv 281
           +l++gs+d+t k+wd+qt++cv+tl+gh  nv+ v f+p+  ++++gs+Dg++r+W +++  l +tl++  ++v++  +++ +++v++
   Q: 202  YLITGSDDQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHPELPIILTGSEDGTVRLWHSTTYRLENTLNYGLERVWALGYMKGSRRVVI 289
           ***************************************************************************9998666666654 PP

Organism

Leersia perrieri

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MAVMSAAAPR KLAQRSERVK SVDLHPTEPW ILSSLYSGSV CIWNYQTQTM VKSFEVTELP 60
VRSAKFIARK QWVVAGADDM FIRVYNYNTM DKVKVFEAHT DYIRCVAVHP TQPFVLSSSD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTGTGA TGTCGGCAGC CGCTCCGGTT GGATATCAAG GTAGCTACGG TGCATCTCAC 60
TCGGATCTGC TTAGCTTAGT TTGGTTTGCT TTGGTATGTT TAGCTGATTG GGTGATCGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	73.19	0.00e+00	1353.00
IUUC-Aml-002154	Ailuropoda melanoleuca	61.05	0.00e+00	1097.00
IUUC-Atr-003090	Amborella trichopoda	79.08	0.00e+00	1445.00
IUUC-Apl-003976	Anas platyrhynchos	61.05	0.00e+00	1101.00
IUUC-Aca-004301	Anolis carolinensis	61.00	0.00e+00	1102.00
IUUC-Aly-006508	Arabidopsis lyrata	80.00	0.00e+00	1490.00
IUUC-Ath-007630	Arabidopsis thaliana	79.58	0.00e+00	1482.00
IUUC-Ago-007914	Ashbya gossypii	46.13	0.00e+00	720.00
IUUC-Acl-008237	Aspergillus clavatus	52.62	0.00e+00	897.00
IUUC-Afl-008535	Aspergillus flavus	51.00	0.00e+00	852.00
IUUC-Afu-008845	Aspergillus fumigatus	51.46	0.00e+00	885.00
IUUC-Ani-009135	Aspergillus nidulans	53.41	0.00e+00	872.00
IUUC-Ang-009654	Aspergillus niger	56.43	0.00e+00	813.00
IUUC-Aor-009939	Aspergillus oryzae	51.66	0.00e+00	906.00
IUUC-Ate-010355	Aspergillus terreus	51.51	0.00e+00	870.00
IUUC-Ame-010922	Astyanax mexicanus	53.77	0.00e+00	946.00
IUUC-Bgr-012249	Blumeria graminis	52.79	0.00e+00	869.00
IUUC-Bta-013579	Bos taurus	62.38	0.00e+00	971.00
IUUC-Bci-013866	Botrytis cinerea	53.00	0.00e+00	867.00
IUUC-Bdi-015046	Brachypodium distachyon	89.36	0.00e+00	1630.00
IUUC-Bol-016271	Brassica oleracea	80.20	0.00e+00	1507.00
IUUC-Cel-018387	Caenorhabditis elegans	55.00	0.00e+00	954.00
IUUC-Cja-019145	Callithrix jacchus	60.93	0.00e+00	1096.00
IUUC-Cfa-020564	Canis familiaris	61.05	0.00e+00	1098.00
IUUC-Cpo-022201	Cavia porcellus	61.05	0.00e+00	1098.00
IUUC-Csa-023383	Chlorocebus sabaeus	65.84	0.00e+00	832.00
IUUC-Cho-024454	Choloepus hoffmanni	59.45	0.00e+00	920.00
IUUC-Cin-025681	Ciona intestinalis	57.71	0.00e+00	983.00
IUUC-Csv-026012	Ciona savignyi	59.60	0.00e+00	961.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	48.96	0.00e+00	785.00
IUUC-Cne-026986	Cryptococcus neoformans	50.00	0.00e+00	857.00
IUUC-Cme-027219	Cyanidioschyzon merolae	51.88	0.00e+00	870.00
IUUC-Dre-027846	Danio rerio	61.35	0.00e+00	1092.00
IUUC-Dor-030462	Dipodomys ordii	59.33	0.00e+00	840.00
IUUC-Dse-031268	Dothistroma septosporum	52.03	0.00e+00	868.00
IUUC-Dme-031791	Drosophila melanogaster	57.44	0.00e+00	998.00
IUUC-Ete-033166	Echinops telfairi	58.51	0.00e+00	697.00
IUUC-Eca-034180	Equus caballus	59.43	0.00e+00	1054.00
IUUC-Eeu-035086	Erinaceus europaeus	49.06	5.00e-122	431.00
IUUC-Fca-036265	Felis catus	61.05	0.00e+00	1097.00
IUUC-Fal-037202	Ficedula albicollis	60.66	0.00e+00	1065.00
IUUC-Fox-037711	Fusarium oxysporum	53.17	0.00e+00	837.00
IUUC-Fso-038268	Fusarium solani	51.82	0.00e+00	840.00
IUUC-Gmo-039046	Gadus morhua	60.14	0.00e+00	1087.00
IUUC-Ggr-039863	Gaeumannomyces graminis	52.88	0.00e+00	859.00
IUUC-Gga-041112	Gallus gallus	61.65	0.00e+00	1107.00
IUUC-Gac-041733	Gasterosteus aculeatus	61.17	0.00e+00	1056.00
IUUC-Gma-044086	Glycine max	82.62	0.00e+00	1547.00
IUUC-Ggo-044984	Gorilla gorilla	60.93	0.00e+00	1096.00
IUUC-Hsa-046698	Homo sapiens	60.81	0.00e+00	1095.00
IUUC-Hvu-047669	Hordeum vulgare	95.97	0.00e+00	715.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	61.79	0.00e+00	1095.00
IUUC-Kpa-049265	Komagataella pastoris	50.44	0.00e+00	834.00
IUUC-Lch-050473	Latimeria chalumnae	60.69	0.00e+00	1095.00
IUUC-Loc-052675	Lepisosteus oculatus	60.62	0.00e+00	1093.00
IUUC-Lma-053218	Leptosphaeria maculans	52.03	0.00e+00	854.00
IUUC-Laf-053757	Loxodonta africana	61.03	0.00e+00	1094.00
IUUC-Mcc-054859	Macaca mulatta	60.93	0.00e+00	1096.00
IUUC-Meu-056174	Macropus eugenii	52.39	2.00e-107	383.00
IUUC-Mor-057264	Magnaporthe oryzae	53.06	0.00e+00	848.00
IUUC-Mpo-057538	Magnaporthe poae	51.96	0.00e+00	861.00
IUUC-Mtr-058618	Medicago truncatula	83.32	0.00e+00	1518.00
IUUC-Mga-059875	Meleagris gallopavo	61.38	0.00e+00	1102.00
IUUC-Mvi-060240	Microbotryum violaceum	51.11	0.00e+00	880.00
IUUC-Mmr-061261	Microcebus murinus	61.05	0.00e+00	1097.00
IUUC-Mdo-062076	Monodelphis domestica	61.29	0.00e+00	1102.00
IUUC-Mmu-063324	Mus musculus	61.05	0.00e+00	1100.00
IUUC-Mac-064636	Musa acuminata	83.44	0.00e+00	1542.00
IUUC-Mpu-065961	Mustela putorius furo	60.76	0.00e+00	1097.00
IUUC-Mlu-067059	Myotis lucifugus	60.22	0.00e+00	1082.00
IUUC-Nfi-068277	Neosartorya fischeri	51.51	0.00e+00	886.00
IUUC-Ncr-068659	Neurospora crassa	53.01	0.00e+00	880.00
IUUC-Nle-069034	Nomascus leucogenys	60.93	0.00e+00	1096.00
IUUC-Opr-070334	Ochotona princeps	63.29	0.00e+00	995.00
IUUC-Ont-071563	Oreochromis niloticus	61.23	0.00e+00	1091.00
IUUC-Oan-073416	Ornithorhynchus anatinus	60.66	0.00e+00	1053.00
IUUC-Ocu-074522	Oryctolagus cuniculus	61.79	0.00e+00	1092.00
IUUC-Oba-075751	Oryza barthii	90.43	0.00e+00	1637.00
IUUC-Obr-076163	Oryza brachyantha	95.67	0.00e+00	1701.00
IUUC-Ogl-077450	Oryza glaberrima	83.83	0.00e+00	1537.00
IUUC-Ogu-078994	Oryza glumaepatula	83.06	0.00e+00	1513.00
IUUC-Oin-079856	Oryza indica	94.72	0.00e+00	1700.00
IUUC-Olo-080731	Oryza longistaminata	83.90	0.00e+00	1503.00
IUUC-Ome-081554	Oryza meridionalis	90.21	0.00e+00	1589.00
IUUC-Oni-082324	Oryza nivara	83.06	0.00e+00	1513.00
IUUC-Opu-083400	Oryza punctata	92.28	0.00e+00	1696.00
IUUC-Oru-085196	Oryza rufipogon	92.28	0.00e+00	1645.00
IUUC-Osa-086026	Oryza sativa	83.56	0.00e+00	1531.00
IUUC-Ola-087245	Oryzias latipes	60.99	0.00e+00	1090.00
IUUC-Olu-087655	Ostreococcus lucimarinus	65.88	0.00e+00	1118.00
IUUC-Oga-088163	Otolemur garnettii	59.00	0.00e+00	1042.00
IUUC-Oar-089842	Ovis aries	60.93	0.00e+00	1097.00
IUUC-Ptr-090501	Pan troglodytes	60.93	0.00e+00	1097.00
IUUC-Pan-092011	Papio anubis	60.93	0.00e+00	1096.00
IUUC-Psi-093308	Pelodiscus sinensis	61.17	0.00e+00	1102.00
IUUC-Pma-094695	Petromyzon marinus	55.69	0.00e+00	964.00
IUUC-Pno-094785	Phaeosphaeria nodorum	57.73	1.00e-102	366.00
IUUC-Ppa-095911	Physcomitrella patens	75.11	0.00e+00	1350.00
IUUC-Pfo-096587	Poecilia formosa	60.99	0.00e+00	1089.00
IUUC-Pab-097926	Pongo abelii	59.55	0.00e+00	1025.00
IUUC-Pop-099634	Populus trichocarpa	82.96	0.00e+00	1526.00
IUUC-Pca-100965	Procavia capensis	60.10	0.00e+00	1062.00
IUUC-Ppe-101470	Prunus persica	82.90	0.00e+00	1563.00
IUUC-Pva-102451	Pteropus vampyrus	58.27	0.00e+00	833.00
IUUC-Pgr-103453	Puccinia graminis	53.33	0.00e+00	908.00
IUUC-Ptt-103868	Puccinia triticina	53.45	0.00e+00	908.00
IUUC-Pte-104274	Pyrenophora teres	52.75	0.00e+00	877.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	52.54	0.00e+00	833.00
IUUC-Rno-105979	Rattus norvegicus	53.35	0.00e+00	800.00
IUUC-Sce-106269	Saccharomyces cerevisiae	46.98	0.00e+00	738.00
IUUC-Sha-106905	Sarcophilus harrisii	61.29	0.00e+00	1104.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	45.61	0.00e+00	755.00
IUUC-Spo-108299	Schizosaccharomyces pombe	46.81	0.00e+00	782.00
IUUC-Smo-108695	Selaginella moellendorffii	79.48	0.00e+00	1362.00
IUUC-Sit-110692	Setaria italica	89.86	0.00e+00	1612.00
IUUC-Sly-111775	Solanum lycopersicum	81.37	0.00e+00	1526.00
IUUC-Stu-112906	Solanum tuberosum	80.57	0.00e+00	1390.00
IUUC-Sar-113472	Sorex araneus	56.94	0.00e+00	758.00
IUUC-Sbi-113801	Sorghum bicolor	88.72	0.00e+00	1626.00
IUUC-Sre-115040	Sporisorium reilianum	52.09	0.00e+00	882.00
IUUC-Ssc-115593	Sus scrofa	60.93	0.00e+00	1096.00
IUUC-Tgu-117239	Taeniopygia guttata	61.29	0.00e+00	1104.00
IUUC-Tru-118025	Takifugu rubripes	61.10	0.00e+00	1085.00
IUUC-Tsy-118824	Tarsius syrichta	58.52	0.00e+00	785.00
IUUC-Tni-120142	Tetraodon nigroviridis	61.29	0.00e+00	1083.00
IUUC-Tca-121613	Theobroma cacao	83.66	0.00e+00	1568.00
IUUC-Tre-122072	Trichoderma reesei	52.87	0.00e+00	868.00
IUUC-Tvi-122546	Trichoderma virens	51.75	0.00e+00	857.00
IUUC-Tae-125385	Triticum aestivum	90.00	0.00e+00	1631.00
IUUC-Tur-126283	Triticum urartu	74.09	0.00e+00	1355.00
IUUC-Tme-127041	Tuber melanosporum	52.88	0.00e+00	888.00
IUUC-Tbe-127770	Tupaia belangeri	60.64	0.00e+00	877.00
IUUC-Ttr-129294	Tursiops truncatus	60.81	0.00e+00	1094.00
IUUC-Uma-129351	Ustilago maydis	50.49	0.00e+00	872.00
IUUC-Vda-129716	Verticillium dahliae	53.51	0.00e+00	892.00
IUUC-Vpa-130037	Vicugna pacos	50.00	4.00e-128	451.00
IUUC-Vvi-131689	Vitis vinifera	86.08	0.00e+00	1524.00
IUUC-Xtr-132633	Xenopus tropicalis	62.35	0.00e+00	1100.00
IUUC-Xma-133347	Xiphophorus maculatus	62.34	0.00e+00	1091.00
IUUC-Yli-134455	Yarrowia lipolytica	50.38	0.00e+00	789.00
IUUC-Zma-135706	Zea mays	89.47	0.00e+00	1655.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence