iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sja-107838

Ensembl Protein ID

EEB08898

UniProt Accession

B6K5U4; B6K5U4_SCHJY

Genbank Protein ID

EEB08898.1

Protein Name

Coatomer beta' subunit

Genbank Nucleotide ID

KE651167

Gene Name

SJAG_04070

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SJAG_04070	EEB08898	EEB08898

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.30e-33	109.3	11	49
UBD/Beta-Prp	7.10e-66	220.4	10	301

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           +Htd+v +++f ++ + ++s+ ++g + +W++ t++++k
   Q: 11   THTDRVKAIDFhPSePWILSSHYNGEVCIWNYETQTPVK 49
           5***********666*****************9998875 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgd 107
            +h++++++++f+p++++++++ ++g + +w+++t++ ++++  ++ +++a+ f+ +++++v gs+D  ++v++++tg+ v  +++h d++++l+++p++ 
   Q: 10   LTHTDRVKAIDFHPSEPWILSSHYNGEVCIWNYETQTPVKKFDINDVPIRACAFIARKNWFVCGSDDFQLRVYNYNTGEKVTQFEAHPDYIRALTVHPTQP 110
           579************************************************************************************************** PP
   S: 108  klvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng..kelvsgsldgtvk 205
           ++++ s+d  i++w++e++++  ++++gh++ v++++++p++ n ++s++lD+ v++W+  +     tl+  h++  + +s+ + g  ++lv++++d+ +k
   Q: 111  FVLTCSDDTKIKCWNWEQNWKCVQVFEGHSRYVMSLAINPKDtNTFASSCLDGSVKIWSFGSTVANFTLEA-HDKGANFVSYYPAGdkPYLVTAGDDRLIK 210
           *******************98888**********************************8766666666676.*********9998888************* PP
   S: 206  lwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkkne 298
           +wd+qt+ cvr l+ght+nv+   f+++  + +sgs+Dg+++iW + s +l+k+++ + ++ ++++    ++n lv++++ds + +++l ++e
   Q: 211  IWDYQTKACVRVLEGHTNNVSFALFHNKFPLAISGSEDGTVKIWHTLSYELVKSYNFSMERAWCISQ--NSENGLVTVGFDSGIIVFSLGRDE 301
           *****************************************************************99..99****************998776 PP

Organism

Schizosaccharomyces japonicus

Protein Sequence
(Fasta)

MRLDFKRKFL THTDRVKAID FHPSEPWILS SHYNGEVCIW NYETQTPVKK FDINDVPIRA 60
CAFIARKNWF VCGSDDFQLR VYNYNTGEKV TQFEAHPDYI RALTVHPTQP FVLTCSDDTK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCTACCTACC TAAGCCAACA GCACCCTACC AACTGCCTCT ACCCTCGTTT CCCTTCATTC 60
CGTAGAGTTT CTAATAGTCC TTTGAGGTTT TGGAGCCGTT GTAGACCTCC TTATAATAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0032511--P:late endosome to vacuole transport via multivesicular body sorting pathway
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	39.95	0.00e+00	632.00
IUUC-Aml-002154	Ailuropoda melanoleuca	47.34	0.00e+00	833.00
IUUC-Atr-003090	Amborella trichopoda	47.38	0.00e+00	763.00
IUUC-Apl-003976	Anas platyrhynchos	47.09	0.00e+00	831.00
IUUC-Aca-004301	Anolis carolinensis	47.59	0.00e+00	834.00
IUUC-Aly-005643	Arabidopsis lyrata	47.19	0.00e+00	757.00
IUUC-Ath-007630	Arabidopsis thaliana	47.59	0.00e+00	778.00
IUUC-Ago-007914	Ashbya gossypii	46.29	0.00e+00	723.00
IUUC-Acl-008237	Aspergillus clavatus	53.29	0.00e+00	882.00
IUUC-Afl-008535	Aspergillus flavus	52.25	0.00e+00	840.00
IUUC-Afu-008845	Aspergillus fumigatus	53.42	0.00e+00	862.00
IUUC-Ani-009135	Aspergillus nidulans	53.92	0.00e+00	865.00
IUUC-Ang-009654	Aspergillus niger	55.18	0.00e+00	783.00
IUUC-Aor-009939	Aspergillus oryzae	52.53	0.00e+00	890.00
IUUC-Ate-010355	Aspergillus terreus	53.04	0.00e+00	857.00
IUUC-Ame-010922	Astyanax mexicanus	43.89	0.00e+00	729.00
IUUC-Bgr-012249	Blumeria graminis	51.85	0.00e+00	840.00
IUUC-Bta-013579	Bos taurus	47.34	0.00e+00	756.00
IUUC-Bci-013866	Botrytis cinerea	54.05	0.00e+00	832.00
IUUC-Bdi-015046	Brachypodium distachyon	45.76	0.00e+00	763.00
IUUC-Bol-015466	Brassica oleracea	47.34	0.00e+00	762.00
IUUC-Bra-016617	Brassica rapa	47.47	0.00e+00	765.00
IUUC-Cel-018387	Caenorhabditis elegans	45.81	0.00e+00	761.00
IUUC-Cja-019145	Callithrix jacchus	47.34	0.00e+00	833.00
IUUC-Cfa-020564	Canis familiaris	47.34	0.00e+00	833.00
IUUC-Cpo-022201	Cavia porcellus	47.47	0.00e+00	835.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	45.69	0.00e+00	724.00
IUUC-Csa-023383	Chlorocebus sabaeus	48.76	0.00e+00	636.00
IUUC-Cho-024454	Choloepus hoffmanni	43.93	0.00e+00	713.00
IUUC-Cin-025681	Ciona intestinalis	46.52	0.00e+00	766.00
IUUC-Csv-026012	Ciona savignyi	47.88	0.00e+00	775.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	48.10	0.00e+00	740.00
IUUC-Cne-026986	Cryptococcus neoformans	49.45	0.00e+00	813.00
IUUC-Cme-027219	Cyanidioschyzon merolae	41.41	0.00e+00	697.00
IUUC-Dre-027846	Danio rerio	48.23	0.00e+00	840.00
IUUC-Dor-030462	Dipodomys ordii	43.94	0.00e+00	640.00
IUUC-Dse-031268	Dothistroma septosporum	53.02	0.00e+00	861.00
IUUC-Dme-031791	Drosophila melanogaster	46.09	0.00e+00	766.00
IUUC-Ete-033166	Echinops telfairi	43.45	3.00e-151	526.00
IUUC-Eca-034180	Equus caballus	46.02	0.00e+00	792.00
IUUC-Eeu-035086	Erinaceus europaeus	36.53	3.00e-79	288.00
IUUC-Fca-036265	Felis catus	47.34	0.00e+00	833.00
IUUC-Fal-037202	Ficedula albicollis	46.79	0.00e+00	791.00
IUUC-Fox-037711	Fusarium oxysporum	52.03	0.00e+00	779.00
IUUC-Fso-038268	Fusarium solani	51.64	0.00e+00	779.00
IUUC-Gmo-039046	Gadus morhua	47.47	0.00e+00	826.00
IUUC-Ggr-039863	Gaeumannomyces graminis	53.29	0.00e+00	819.00
IUUC-Gga-041112	Gallus gallus	47.34	0.00e+00	833.00
IUUC-Gac-041733	Gasterosteus aculeatus	47.15	0.00e+00	803.00
IUUC-Gma-042910	Glycine max	46.65	0.00e+00	778.00
IUUC-Ggo-044984	Gorilla gorilla	47.47	0.00e+00	833.00
IUUC-Hsa-046698	Homo sapiens	47.59	0.00e+00	835.00
IUUC-Hvu-047669	Hordeum vulgare	53.85	2.00e-123	433.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	47.34	0.00e+00	832.00
IUUC-Kpa-049265	Komagataella pastoris	51.64	0.00e+00	845.00
IUUC-Lch-050473	Latimeria chalumnae	47.72	0.00e+00	830.00
IUUC-Lpe-051579	Leersia perrieri	45.61	0.00e+00	755.00
IUUC-Loc-052675	Lepisosteus oculatus	47.59	0.00e+00	832.00
IUUC-Lma-053218	Leptosphaeria maculans	51.71	0.00e+00	826.00
IUUC-Laf-053757	Loxodonta africana	47.22	0.00e+00	826.00
IUUC-Mcc-054859	Macaca mulatta	47.34	0.00e+00	833.00
IUUC-Meu-056174	Macropus eugenii	39.51	6.00e-70	256.00
IUUC-Mor-057264	Magnaporthe oryzae	53.92	0.00e+00	811.00
IUUC-Mpo-057538	Magnaporthe poae	53.42	0.00e+00	840.00
IUUC-Mtr-058310	Medicago truncatula	46.65	0.00e+00	778.00
IUUC-Mla-058937	Melampsora laricipopulina	50.13	0.00e+00	839.00
IUUC-Mga-059875	Meleagris gallopavo	47.22	0.00e+00	828.00
IUUC-Mvi-060240	Microbotryum violaceum	49.18	0.00e+00	848.00
IUUC-Mmr-061261	Microcebus murinus	47.34	0.00e+00	833.00
IUUC-Mdo-062076	Monodelphis domestica	47.34	0.00e+00	834.00
IUUC-Mmu-063324	Mus musculus	47.59	0.00e+00	836.00
IUUC-Mac-064636	Musa acuminata	46.51	0.00e+00	763.00
IUUC-Mpu-065961	Mustela putorius furo	47.34	0.00e+00	833.00
IUUC-Mlu-067059	Myotis lucifugus	46.58	0.00e+00	802.00
IUUC-Nfi-068277	Neosartorya fischeri	52.99	0.00e+00	853.00
IUUC-Ncr-068659	Neurospora crassa	53.16	0.00e+00	870.00
IUUC-Nle-069034	Nomascus leucogenys	47.47	0.00e+00	834.00
IUUC-Opr-070334	Ochotona princeps	47.75	0.00e+00	780.00
IUUC-Ont-071563	Oreochromis niloticus	47.72	0.00e+00	829.00
IUUC-Oan-073416	Ornithorhynchus anatinus	47.18	0.00e+00	795.00
IUUC-Ocu-074522	Oryctolagus cuniculus	47.22	0.00e+00	829.00
IUUC-Oba-075760	Oryza barthii	45.39	0.00e+00	741.00
IUUC-Obr-076201	Oryza brachyantha	45.76	0.00e+00	758.00
IUUC-Ogl-077450	Oryza glaberrima	45.89	0.00e+00	764.00
IUUC-Ogu-078994	Oryza glumaepatula	45.39	0.00e+00	741.00
IUUC-Oin-079856	Oryza indica	45.61	0.00e+00	750.00
IUUC-Olo-080731	Oryza longistaminata	45.81	0.00e+00	728.00
IUUC-Ome-081762	Oryza meridionalis	43.29	0.00e+00	678.00
IUUC-Oni-082324	Oryza nivara	45.39	0.00e+00	740.00
IUUC-Opu-083400	Oryza punctata	44.24	0.00e+00	740.00
IUUC-Oru-084829	Oryza rufipogon	45.39	0.00e+00	741.00
IUUC-Osa-086026	Oryza sativa	46.14	0.00e+00	768.00
IUUC-Ola-087245	Oryzias latipes	47.09	0.00e+00	825.00
IUUC-Olu-087655	Ostreococcus lucimarinus	45.96	0.00e+00	751.00
IUUC-Oga-088163	Otolemur garnettii	46.09	0.00e+00	800.00
IUUC-Oar-089842	Ovis aries	47.34	0.00e+00	834.00
IUUC-Ptr-090501	Pan troglodytes	47.47	0.00e+00	833.00
IUUC-Pan-092011	Papio anubis	47.34	0.00e+00	833.00
IUUC-Psi-093308	Pelodiscus sinensis	47.09	0.00e+00	830.00
IUUC-Pma-094695	Petromyzon marinus	46.57	0.00e+00	767.00
IUUC-Pno-094785	Phaeosphaeria nodorum	51.89	1.00e-90	325.00
IUUC-Ppa-095638	Physcomitrella patens	47.41	0.00e+00	775.00
IUUC-Pfo-096587	Poecilia formosa	47.47	0.00e+00	829.00
IUUC-Pab-097926	Pongo abelii	46.61	0.00e+00	771.00
IUUC-Pop-099634	Populus trichocarpa	45.89	0.00e+00	766.00
IUUC-Pca-100965	Procavia capensis	46.46	0.00e+00	802.00
IUUC-Ppe-101470	Prunus persica	47.03	0.00e+00	778.00
IUUC-Pva-102451	Pteropus vampyrus	44.39	0.00e+00	651.00
IUUC-Pgr-103590	Puccinia graminis	49.87	0.00e+00	836.00
IUUC-Ptt-103868	Puccinia triticina	49.49	0.00e+00	833.00
IUUC-Pte-104274	Pyrenophora teres	52.84	0.00e+00	858.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	52.44	0.00e+00	812.00
IUUC-Rno-105979	Rattus norvegicus	40.47	0.00e+00	625.00
IUUC-Sce-106269	Saccharomyces cerevisiae	46.77	0.00e+00	748.00
IUUC-Sha-106905	Sarcophilus harrisii	47.34	0.00e+00	834.00
IUUC-Spo-108299	Schizosaccharomyces pombe	67.93	0.00e+00	1163.00
IUUC-Smo-108695	Selaginella moellendorffii	45.52	0.00e+00	751.00
IUUC-Sit-110239	Setaria italica	45.76	0.00e+00	763.00
IUUC-Sly-111775	Solanum lycopersicum	46.27	0.00e+00	767.00
IUUC-Stu-112906	Solanum tuberosum	45.76	0.00e+00	684.00
IUUC-Sar-113472	Sorex araneus	42.93	5.00e-166	575.00
IUUC-Sbi-114052	Sorghum bicolor	45.76	0.00e+00	769.00
IUUC-Sre-115040	Sporisorium reilianum	49.62	0.00e+00	816.00
IUUC-Ssc-115593	Sus scrofa	47.22	0.00e+00	832.00
IUUC-Tgu-117239	Taeniopygia guttata	47.22	0.00e+00	833.00
IUUC-Tru-118025	Takifugu rubripes	47.03	0.00e+00	823.00
IUUC-Tsy-118824	Tarsius syrichta	43.59	9.00e-174	601.00
IUUC-Tni-120142	Tetraodon nigroviridis	47.09	0.00e+00	820.00
IUUC-Tca-121613	Theobroma cacao	46.65	0.00e+00	775.00
IUUC-Tre-122072	Trichoderma reesei	52.91	0.00e+00	835.00
IUUC-Tvi-122546	Trichoderma virens	52.41	0.00e+00	836.00
IUUC-Tae-125488	Triticum aestivum	46.27	0.00e+00	769.00
IUUC-Tur-126283	Triticum urartu	40.00	0.00e+00	630.00
IUUC-Tme-127041	Tuber melanosporum	54.99	0.00e+00	900.00
IUUC-Tbe-127770	Tupaia belangeri	46.67	0.00e+00	679.00
IUUC-Ttr-129294	Tursiops truncatus	47.22	0.00e+00	830.00
IUUC-Uma-129351	Ustilago maydis	47.96	0.00e+00	808.00
IUUC-Vda-129716	Verticillium dahliae	52.41	0.00e+00	865.00
IUUC-Vpa-130037	Vicugna pacos	38.84	1.00e-91	328.00
IUUC-Vvi-131689	Vitis vinifera	46.90	0.00e+00	771.00
IUUC-Xtr-132633	Xenopus tropicalis	47.72	0.00e+00	835.00
IUUC-Xma-133347	Xiphophorus maculatus	47.59	0.00e+00	831.00
IUUC-Yli-134455	Yarrowia lipolytica	48.99	0.00e+00	783.00
IUUC-Zma-135706	Zea mays	46.40	0.00e+00	778.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence