iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007222

Ensembl Protein ID

AT5G11240.1

UniProt Accession

B5X503; B5X503_ARATH

Genbank Protein ID

ACI46510.1; AED91651.1

Protein Name

At5g11240; Transducin family protein / WD-40 repeat family protein

Genbank Nucleotide ID

BT046122; CP002688

Gene Name

At5g11240; F2I11.130; F2I11_130

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G11240	AT5G11240.1	AT5G11240.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.90e-09	37.7	16	37

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 13   d.tllvsGsdDgtikvWDlrtg 33
             ++l+ +++Dg ik+WD+ +g
   Q: 16   AlDYLALSTGDGRIKIWDTVKG 37
           34799999**********8766 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MNLVNIKDVL TSFSPALDYL ALSTGDGRIK IWDTVKGQVQ TEFADIASTE ETNIYTKVGK 60
GHLSVDYTCM KWLSLEKKKK RKLGTSVLVL GTGGGDVLAL DVASGQLKWR ISDCHPGGVN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CATTAAACCC GTAATAATTA AATTTGACTA ATCCAACCCT TTTCGCTTCG CCGTTTTGAA 60
ACTTCAGAAA ACAGAAAAAC CTCTCAAAAA CCCTAATTTG CTTTCTTCTT CTTCGCCGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011047--Quinoprotein_ADH-like_supfam
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005634--C:nucleus
GO:0006364--P:rRNA processing

KEGG

ath:AT5G11240

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001865	Ailuropoda melanoleuca	27.61	2.00e-24	107.00
IUUC-Atr-002533	Amborella trichopoda	44.66	2.00e-139	488.00
IUUC-Apl-003242	Anas platyrhynchos	25.17	1.00e-17	84.30
IUUC-Aca-004607	Anolis carolinensis	22.41	3.00e-25	109.00
IUUC-Aly-006074	Arabidopsis lyrata	95.81	0.00e+00	998.00
IUUC-Ame-011014	Astyanax mexicanus	30.35	4.00e-20	92.40
IUUC-Bta-012605	Bos taurus	26.94	3.00e-23	102.00
IUUC-Bdi-014072	Brachypodium distachyon	46.79	2.00e-137	482.00
IUUC-Bol-016255	Brassica oleracea	86.69	0.00e+00	1033.00
IUUC-Bra-017484	Brassica rapa	88.27	0.00e+00	1028.00
IUUC-Cja-019620	Callithrix jacchus	24.17	5.00e-26	112.00
IUUC-Cfa-020520	Canis familiaris	29.04	1.00e-24	107.00
IUUC-Cpo-022456	Cavia porcellus	26.60	7.00e-24	105.00
IUUC-Cho-024726	Choloepus hoffmanni	26.60	2.00e-23	103.00
IUUC-Dre-028051	Danio rerio	31.25	4.00e-24	105.00
IUUC-Dno-030031	Dasypus novemcinctus	28.31	3.00e-23	103.00
IUUC-Ete-032863	Echinops telfairi	29.20	5.00e-10	59.30
IUUC-Eca-033243	Equus caballus	27.18	2.00e-15	76.60
IUUC-Eeu-034970	Erinaceus europaeus	30.71	3.00e-09	56.60
IUUC-Fca-036009	Felis catus	27.27	6.00e-24	105.00
IUUC-Fal-037264	Ficedula albicollis	23.76	2.00e-20	93.20
IUUC-Gmo-039124	Gadus morhua	29.56	1.00e-27	117.00
IUUC-Gga-040862	Gallus gallus	26.04	4.00e-26	112.00
IUUC-Gac-041468	Gasterosteus aculeatus	32.36	3.00e-28	119.00
IUUC-Gma-042795	Glycine max	55.42	9.00e-166	576.00
IUUC-Ggo-044432	Gorilla gorilla	27.95	1.00e-24	107.00
IUUC-Hsa-047036	Homo sapiens	27.61	3.00e-24	105.00
IUUC-Hvu-047736	Hordeum vulgare	26.99	4.00e-22	98.20
IUUC-Itr-048644	Ictidomys tridecemlineatus	27.61	2.00e-24	106.00
IUUC-Lch-049553	Latimeria chalumnae	23.22	5.00e-23	102.00
IUUC-Laf-053462	Loxodonta africana	21.74	7.00e-24	104.00
IUUC-Mcc-055239	Macaca mulatta	27.95	1.00e-24	107.00
IUUC-Mtr-057977	Medicago truncatula	56.65	7.00e-173	600.00
IUUC-Mga-060079	Meleagris gallopavo	24.52	2.00e-18	87.00
IUUC-Mmr-061472	Microcebus murinus	27.27	5.00e-24	105.00
IUUC-Mdo-061972	Monodelphis domestica	25.00	4.00e-24	105.00
IUUC-Mmu-063354	Mus musculus	27.70	5.00e-24	105.00
IUUC-Mac-065064	Musa acuminata	54.41	8.00e-134	469.00
IUUC-Mpu-066877	Mustela putorius furo	26.87	3.00e-23	102.00
IUUC-Mlu-067476	Myotis lucifugus	23.00	7.00e-22	98.60
IUUC-Nle-069119	Nomascus leucogenys	27.95	1.00e-24	107.00
IUUC-Ont-072093	Oreochromis niloticus	23.43	7.00e-31	128.00
IUUC-Oan-072944	Ornithorhynchus anatinus	21.61	3.00e-17	82.80
IUUC-Ocu-074472	Oryctolagus cuniculus	29.04	4.00e-24	105.00
IUUC-Oba-075009	Oryza barthii	46.19	2.00e-132	465.00
IUUC-Ogl-077189	Oryza glaberrima	43.84	1.00e-130	459.00
IUUC-Oin-079064	Oryza indica	46.36	2.00e-132	465.00
IUUC-Opu-083604	Oryza punctata	46.52	2.00e-133	469.00
IUUC-Oru-084620	Oryza rufipogon	46.36	3.00e-133	468.00
IUUC-Osa-085345	Oryza sativa	46.36	8.00e-133	466.00
IUUC-Ola-086626	Oryzias latipes	25.09	3.00e-30	125.00
IUUC-Oga-087911	Otolemur garnettii	27.95	8.00e-24	104.00
IUUC-Ptr-091603	Pan troglodytes	27.61	4.00e-24	105.00
IUUC-Pan-092569	Papio anubis	27.95	1.00e-24	107.00
IUUC-Pma-094287	Petromyzon marinus	27.63	4.00e-23	102.00
IUUC-Ppa-095327	Physcomitrella patens	39.51	1.00e-64	240.00
IUUC-Pfo-097292	Poecilia formosa	30.98	7.00e-27	115.00
IUUC-Pab-097878	Pongo abelii	27.61	4.00e-24	105.00
IUUC-Pop-099418	Populus trichocarpa	59.86	0.00e+00	644.00
IUUC-Pca-100941	Procavia capensis	30.24	3.00e-18	86.30
IUUC-Ppe-101779	Prunus persica	60.13	0.00e+00	673.00
IUUC-Pva-102493	Pteropus vampyrus	30.37	2.00e-17	84.00
IUUC-Rno-105084	Rattus norvegicus	27.70	5.00e-24	105.00
IUUC-Sha-107486	Sarcophilus harrisii	23.44	4.00e-27	115.00
IUUC-Smo-108825	Selaginella moellendorffii	32.75	2.00e-66	246.00
IUUC-Sit-110825	Setaria italica	45.85	8.00e-137	479.00
IUUC-Sly-111365	Solanum lycopersicum	57.42	3.00e-172	597.00
IUUC-Stu-112812	Solanum tuberosum	57.59	3.00e-171	594.00
IUUC-Sar-113326	Sorex araneus	29.55	7.00e-22	98.20
IUUC-Sbi-114426	Sorghum bicolor	46.06	2.00e-143	502.00
IUUC-Tgu-116726	Taeniopygia guttata	24.20	5.00e-27	115.00
IUUC-Tru-117848	Takifugu rubripes	24.23	3.00e-28	119.00
IUUC-Tni-120591	Tetraodon nigroviridis	31.27	4.00e-28	119.00
IUUC-Tca-121576	Theobroma cacao	59.76	0.00e+00	678.00
IUUC-Tae-125648	Triticum aestivum	46.92	9.00e-138	483.00
IUUC-Tbe-127832	Tupaia belangeri	27.85	3.00e-17	82.80
IUUC-Ttr-128812	Tursiops truncatus	27.85	3.00e-17	83.20
IUUC-Xma-133557	Xiphophorus maculatus	31.76	1.00e-27	117.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence