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Tag Content
iUUCD ID IUUC-Csa-023638
Ensembl Protein ID ENSCSAP00000004863.1
UniProt Accession A0A0D9R8C4; A0A0D9R8C4_CHLSB
Genbank Protein ID ENSCSAP00000004863
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AQIB01076803
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSCSAG00000008602.1 ENSCSAT00000006662.1 ENSCSAP00000004863.1
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 1.00e-15 56.7 168 191
E3 activity/RING/RING 1.70e-06 28.4 16 55
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqqfa 24
    +++Q+r+D+ELA++L+++++++++
   Q: 168 MEEQLRSDEELARKLSIDINNFCE 191
    89********************97 PP
   


   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
    C iC++ + + p++lpCgH+ ++ C+q+ +++ + CP Cr
   Q: 16 CGICMDILVE-PVTLPCGHTLCRPCFQAT-----VEKASLCCPFCR 55
    9*********.9**************877.....7**********8 PP
   

Organism Chlorocebus sabaeus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MALPKGAVPS RSECQCGICM DILVEPVTLP CGHTLCRPCF QATVEKASLC CPFCRRRVSS 60
WTRYHTRRNS LVNVDLWKVI QKHYPRECKL RASGQEAEEV ADDCQPVRLL SKPGELRREY 120
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Protein Fasta Sequence



>IUUC-Csa-023638|E3,RING;UBD,MIU|Chlorocebus sabaeus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGAATAGGGC TTCTGGCTGC GTAAGAGGGA CCCGGGCGCG GAGCTCTGGG AAACTGCGCC 60
AGGCGCCGGG AAGCTGAACC CGGGAGTCGC GCGTCGCCCC CGCAGCAGCG CCAAAGCGGA 120
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Nucleotide Fasta Sequence



>IUUC-Csa-023638|E3,RING;UBD,MIU|Chlorocebus sabaeus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG csab:103241996
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000755 Aegilops tauschii 37.04 4.00e-12 66.20
IUUC-Aml-001573 Ailuropoda melanoleuca 74.13 0.00e+00 697.00
IUUC-Atr-002992 Amborella trichopoda 40.00 4.00e-12 65.50
IUUC-Apl-003963 Anas platyrhynchos 44.69 1.00e-65 244.00
IUUC-Aca-004420 Anolis carolinensis 68.64 3.00e-47 182.00
IUUC-Ame-011521 Astyanax mexicanus 53.11 2.00e-37 150.00
IUUC-Bta-013002 Bos taurus 71.95 0.00e+00 706.00
IUUC-Cja-019945 Callithrix jacchus 81.26 0.00e+00 800.00
IUUC-Cfa-020533 Canis familiaris 75.52 0.00e+00 714.00
IUUC-Cpo-021643 Cavia porcellus 60.49 6.00e-146 510.00
IUUC-Cre-022560 Chlamydomonas reinhardtii 60.71 8.00e-06 45.80
IUUC-Cho-024319 Choloepus hoffmanni 71.60 0.00e+00 646.00
IUUC-Cin-025679 Ciona intestinalis 38.73 3.00e-22 99.40
IUUC-Csv-026052 Ciona savignyi 36.19 8.00e-18 83.60
IUUC-Dre-028519 Danio rerio 44.89 2.00e-35 143.00
IUUC-Dno-029294 Dasypus novemcinctus 73.69 0.00e+00 704.00
IUUC-Ete-032714 Echinops telfairi 52.58 1.00e-89 323.00
IUUC-Eca-033343 Equus caballus 74.41 0.00e+00 707.00
IUUC-Eeu-034633 Erinaceus europaeus 35.49 8.00e-29 120.00
IUUC-Fca-036251 Felis catus 74.08 0.00e+00 722.00
IUUC-Fal-037048 Ficedula albicollis 45.25 3.00e-77 282.00
IUUC-Gmo-039400 Gadus morhua 44.44 3.00e-30 123.00
IUUC-Gga-040444 Gallus gallus 55.27 3.00e-56 213.00
IUUC-Gac-041735 Gasterosteus aculeatus 49.72 1.00e-37 149.00
IUUC-Gma-044332 Glycine max 34.19 2.00e-14 73.60
IUUC-Ggo-044940 Gorilla gorilla 87.00 0.00e+00 668.00
IUUC-Hsa-046424 Homo sapiens 88.44 0.00e+00 872.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 72.66 0.00e+00 669.00
IUUC-Lch-050649 Latimeria chalumnae 38.32 2.00e-51 196.00
IUUC-Loc-051847 Lepisosteus oculatus 34.94 9.00e-48 184.00
IUUC-Laf-053938 Loxodonta africana 67.59 0.00e+00 711.00
IUUC-Mcc-055360 Macaca mulatta 95.97 0.00e+00 1014.00
IUUC-Meu-056684 Macropus eugenii 50.09 1.00e-119 423.00
IUUC-Mtr-058007 Medicago truncatula 39.51 8.00e-14 71.20
IUUC-Mga-059699 Meleagris gallopavo 41.89 2.00e-70 259.00
IUUC-Mmr-060779 Microcebus murinus 75.17 0.00e+00 768.00
IUUC-Mdo-062225 Monodelphis domestica 51.11 3.00e-115 408.00
IUUC-Mmu-064239 Mus musculus 62.87 3.00e-156 545.00
IUUC-Mpu-066141 Mustela putorius furo 73.87 0.00e+00 721.00
IUUC-Mlu-067945 Myotis lucifugus 73.78 0.00e+00 723.00
IUUC-Nle-069769 Nomascus leucogenys 88.27 0.00e+00 890.00
IUUC-Opr-070905 Ochotona princeps 62.06 1.00e-169 589.00
IUUC-Ont-071477 Oreochromis niloticus 41.96 3.00e-34 139.00
IUUC-Oan-073531 Ornithorhynchus anatinus 44.27 5.00e-61 228.00
IUUC-Ocu-073832 Oryctolagus cuniculus 67.66 6.00e-179 620.00
IUUC-Ogu-078203 Oryza glumaepatula 40.00 2.00e-11 63.50
IUUC-Oru-084946 Oryza rufipogon 32.41 1.00e-08 54.30
IUUC-Ola-086478 Oryzias latipes 48.31 5.00e-32 129.00
IUUC-Oga-088318 Otolemur garnettii 73.52 0.00e+00 730.00
IUUC-Oar-089647 Ovis aries 70.91 0.00e+00 683.00
IUUC-Ptr-090516 Pan troglodytes 88.79 0.00e+00 909.00
IUUC-Pan-092302 Papio anubis 95.28 0.00e+00 1013.00
IUUC-Psi-093604 Pelodiscus sinensis 42.30 4.00e-79 288.00
IUUC-Pfo-096441 Poecilia formosa 50.00 2.00e-32 133.00
IUUC-Pab-097729 Pongo abelii 87.92 0.00e+00 891.00
IUUC-Pca-100552 Procavia capensis 64.34 2.00e-124 439.00
IUUC-Ppe-102024 Prunus persica 38.10 4.00e-12 67.00
IUUC-Pva-102780 Pteropus vampyrus 73.74 0.00e+00 725.00
IUUC-Rno-105461 Rattus norvegicus 63.07 5.00e-158 550.00
IUUC-Sha-106809 Sarcophilus harrisii 52.42 2.00e-128 452.00
IUUC-Sly-111317 Solanum lycopersicum 37.25 1.00e-15 77.40
IUUC-Stu-112783 Solanum tuberosum 39.29 1.00e-14 74.30
IUUC-Sar-113579 Sorex araneus 59.69 5.00e-155 540.00
IUUC-Sbi-113834 Sorghum bicolor 37.35 3.00e-12 66.20
IUUC-Tgu-117187 Taeniopygia guttata 64.55 2.00e-45 175.00
IUUC-Tru-118182 Takifugu rubripes 50.44 1.00e-31 130.00
IUUC-Tsy-119217 Tarsius syrichta 57.57 1.00e-72 266.00
IUUC-Tni-120205 Tetraodon nigroviridis 50.86 7.00e-34 137.00
IUUC-Tae-123092 Triticum aestivum 37.04 4.00e-12 66.20
IUUC-Tur-126688 Triticum urartu 35.80 4.00e-12 65.50
IUUC-Tbe-127622 Tupaia belangeri 71.50 0.00e+00 708.00
IUUC-Ttr-128988 Tursiops truncatus 76.22 0.00e+00 743.00
IUUC-Vpa-130302 Vicugna pacos 69.28 1.00e-128 453.00
IUUC-Xtr-132196 Xenopus tropicalis 39.33 1.00e-67 250.00
Created Date 25-Jun-2017

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