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Tag Content
UUCD2 ID IUUC-Pab-097729
UUCD1 version UUC-PoA-00605
Ensembl Protein ID ENSPPYP00000016150.2
UniProt Accession H2PCF9; H2PCF9_PONAB
Genbank Protein ID ENSPPYP00000016150
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID ABGA01139041
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSPPYG00000014441.2 ENSPPYT00000016797.2 ENSPPYP00000016150.2
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 1.20e-12 47.2 168 191
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqqfa 24
    +++Q+++D+ELA++L+++++++++
   Q: 168 MEEQLKSDEELARKLSIDINNFCE 191
    89********************97 PP
   

Organism Pongo abelii
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MALPKDAIPS LSECQCGICM EILVEPVTFP CNHTLCKPCF QSTVEKASLC CPFCRRRVSS 60
WTRYHTRRNS LVNVELWKII QKHYPRECKL RAPGQESEEV ADDYQPVRLL SKPGELRREY 120
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Protein Fasta Sequence



>IUUC-Pab-097729|UBD,MIU|Pongo abelii
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Nucleotide Sequence
(Fasta)
CGGGCGGTTG TGACGTTACT AGCGCTTGTG CGGTGGCTGC TGCGCTGCCG CAACGAATAG 60
GGTTTCTGGC TGCGTAAGAG GGACAGGGGC GCGGAGCTCT GGGAAACTGC GCCAGGCGCC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Pab-097729|UBD,MIU|Pongo abelii
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 76.05 0.00e+00 716.00
IUUC-Atr-002992 Amborella trichopoda 38.36 1.00e-10 60.10
IUUC-Apl-003963 Anas platyrhynchos 45.52 3.00e-67 249.00
IUUC-Aca-004420 Anolis carolinensis 68.07 2.00e-46 180.00
IUUC-Ath-007019 Arabidopsis thaliana 41.33 2.00e-10 61.60
IUUC-Ame-011521 Astyanax mexicanus 56.03 6.00e-37 148.00
IUUC-Bta-013002 Bos taurus 74.22 0.00e+00 731.00
IUUC-Cja-019945 Callithrix jacchus 84.76 0.00e+00 833.00
IUUC-Cfa-020533 Canis familiaris 75.35 0.00e+00 716.00
IUUC-Cpo-021643 Cavia porcellus 61.87 2.00e-150 525.00
IUUC-Csa-023638 Chlorocebus sabaeus 87.92 0.00e+00 935.00
IUUC-Cho-024319 Choloepus hoffmanni 74.04 0.00e+00 671.00
IUUC-Cin-025679 Ciona intestinalis 37.04 1.00e-19 90.50
IUUC-Csv-026052 Ciona savignyi 34.55 1.00e-17 83.20
IUUC-Dre-028519 Danio rerio 45.54 1.00e-35 144.00
IUUC-Dno-029294 Dasypus novemcinctus 75.17 0.00e+00 716.00
IUUC-Ete-032714 Echinops telfairi 51.80 1.00e-87 317.00
IUUC-Eca-033343 Equus caballus 77.12 0.00e+00 734.00
IUUC-Eeu-034633 Erinaceus europaeus 36.01 8.00e-34 137.00
IUUC-Fca-036251 Felis catus 76.32 0.00e+00 743.00
IUUC-Fal-037048 Ficedula albicollis 45.89 2.00e-78 286.00
IUUC-Gmo-039400 Gadus morhua 46.09 1.00e-30 124.00
IUUC-Gga-040444 Gallus gallus 41.37 8.00e-70 258.00
IUUC-Gac-041735 Gasterosteus aculeatus 44.92 9.00e-34 136.00
IUUC-Gma-044332 Glycine max 36.46 6.00e-13 68.60
IUUC-Ggo-044940 Gorilla gorilla 95.75 0.00e+00 753.00
IUUC-Hsa-046424 Homo sapiens 96.15 0.00e+00 964.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 73.72 0.00e+00 681.00
IUUC-Lch-050649 Latimeria chalumnae 37.87 4.00e-54 205.00
IUUC-Loc-051847 Lepisosteus oculatus 34.83 2.00e-46 180.00
IUUC-Laf-053938 Loxodonta africana 70.38 0.00e+00 731.00
IUUC-Mcc-055360 Macaca mulatta 87.57 0.00e+00 908.00
IUUC-Meu-056684 Macropus eugenii 49.22 1.00e-114 406.00
IUUC-Mga-059699 Meleagris gallopavo 42.59 2.00e-71 263.00
IUUC-Mmr-060779 Microcebus murinus 77.97 0.00e+00 793.00
IUUC-Mdo-062225 Monodelphis domestica 50.60 2.00e-112 399.00
IUUC-Mmu-064239 Mus musculus 63.22 3.00e-155 541.00
IUUC-Mpu-066141 Mustela putorius furo 74.91 0.00e+00 729.00
IUUC-Mlu-067945 Myotis lucifugus 75.87 0.00e+00 742.00
IUUC-Nle-069769 Nomascus leucogenys 94.57 0.00e+00 967.00
IUUC-Opr-070905 Ochotona princeps 62.76 2.00e-172 599.00
IUUC-Ont-071477 Oreochromis niloticus 52.17 3.00e-33 135.00
IUUC-Oan-073531 Ornithorhynchus anatinus 42.78 1.00e-62 233.00
IUUC-Ocu-073832 Oryctolagus cuniculus 69.06 0.00e+00 634.00
IUUC-Ola-086478 Oryzias latipes 48.78 8.00e-33 132.00
IUUC-Oga-088318 Otolemur garnettii 76.48 0.00e+00 760.00
IUUC-Oar-089647 Ovis aries 73.17 0.00e+00 710.00
IUUC-Ptr-090516 Pan troglodytes 96.67 0.00e+00 1003.00
IUUC-Pan-092302 Papio anubis 86.89 0.00e+00 906.00
IUUC-Psi-093604 Pelodiscus sinensis 35.37 2.00e-54 206.00
IUUC-Pfo-096441 Poecilia formosa 47.11 7.00e-32 131.00
IUUC-Pca-100552 Procavia capensis 61.62 1.00e-117 416.00
IUUC-Pva-102780 Pteropus vampyrus 75.61 0.00e+00 746.00
IUUC-Rno-105461 Rattus norvegicus 63.60 2.00e-159 555.00
IUUC-Sha-106809 Sarcophilus harrisii 53.21 5.00e-128 451.00
IUUC-Sly-111317 Solanum lycopersicum 37.00 9.00e-15 74.70
IUUC-Stu-112446 Solanum tuberosum 37.27 3.00e-14 72.40
IUUC-Sar-113579 Sorex araneus 60.21 8.00e-157 546.00
IUUC-Tgu-117187 Taeniopygia guttata 65.61 5.00e-46 177.00
IUUC-Tru-118182 Takifugu rubripes 47.93 2.00e-32 133.00
IUUC-Tsy-119217 Tarsius syrichta 59.35 3.00e-69 254.00
IUUC-Tni-120205 Tetraodon nigroviridis 50.00 1.00e-32 133.00
IUUC-Tvi-122557 Trichoderma virens 30.49 4.00e-05 42.70
IUUC-Tbe-127622 Tupaia belangeri 75.00 0.00e+00 747.00
IUUC-Ttr-128988 Tursiops truncatus 79.20 0.00e+00 775.00
IUUC-Vpa-130302 Vicugna pacos 70.72 2.00e-133 469.00
Created Date 25-Jun-2017

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