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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-007098
Ensembl Protein ID AT2G36170.1
UniProt Accession B9DHA6; O80715; P19232; P59263; Q38875; Q9LDJ2; Q9LYW1; Q9M0W3; Q9M1P9; Q9S7X3; RL40A_ARATH
Genbank Protein ID AAA32905.1; AAM15407.1; AEC09212.1; AAK26021.1; AAL07246.1; BAH20123.1
Protein Name Ubiquitin-60S ribosomal protein L40-1; Ubiquitin; 60S ribosomal protein L40-1; CEP52
Genbank Nucleotide ID J05508; AC006921; CP002685; AF360311; AY056360; AK317456
Gene Name RPL40B; RPL40A; UBQ2; At2g36170; F9C22.10
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT2G36170 AT2G36170.1 AT2G36170.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
Protein-protein Interaction
HINT
Post-translational Modifications (PTMs)
dbPTM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
ULD/UBL/NEDD8 1.80e-41 141.1 1 76
ULD/UDP/UBQ/UBQ_PIM 4.30e-28 97.9 1 73
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   ULD/UBL/NEDD8
   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdti+++k+++++keGiPP+qqrli+aGkqled++t+adyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP
   

   ULD/UDP/UBQ/UBQ_PIM
   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+ ++K+ki+++ g+pp+qq+LI+aGk+L+D +tL +++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
           99********************************************************************986 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Ribosomal protein L40-1 is part of the 60S ribosomal subunit.
 Ribosomal protein L40-1 is part of the 60S ribosomal subunit.
Protein Sequence
(Fasta)
MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60
IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY ARLHPRAVNC RKKKCGHSNQ 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007098|ULD,NEDD8;ULD,UBQ_PIM|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CAAAACCCTA AGAAATGGAT AAAGTATAAA GCTTCATTTT TTACACTGCA AACGCCGTTT 60
CGAGACTTCC GGCGAAGAAG ACGAACGCAA AGATGCAGAT TTTCGTGAAA ACGCTAACCG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007098|ULD,NEDD8;ULD,UBQ_PIM|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
Interpro

IPR001975--Ribosomal_L40e
IPR011332--Ribosomal_zn-bd
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom
PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2
Pfam

PF01020--Ribosomal_L40e
PF00240--ubiquitin
PRINTS

PR00348--UBIQUITIN
SMART

SM01377--Ribosomal_L40e
SM00213--UBQ
Gene Ontology

GO:0022625--C:cytosolic large ribosomal subunit
GO:0005730--C:nucleolus
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation
KEGG ath:AT2G36170; ath:AT3G52590
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001006 Aegilops tauschii 60.93 8.00e-47 178.00
IUUC-Aml-001246 Ailuropoda melanoleuca 92.19 7.00e-67 244.00
IUUC-Atr-003081 Amborella trichopoda 79.07 1.00e-49 187.00
IUUC-Apl-004069 Anas platyrhynchos 91.57 2.00e-41 159.00
IUUC-Ago-007932 Ashbya gossypii 89.84 3.00e-65 238.00
IUUC-Acl-008350 Aspergillus clavatus 84.21 2.00e-61 226.00
IUUC-Afl-008554 Aspergillus flavus 90.62 2.00e-65 239.00
IUUC-Afu-008984 Aspergillus fumigatus 90.62 8.00e-65 238.00
IUUC-Ang-009609 Aspergillus niger 89.84 1.00e-64 237.00
IUUC-Aor-009991 Aspergillus oryzae 88.98 2.00e-63 233.00
IUUC-Ate-010252 Aspergillus terreus 90.40 9.00e-64 236.00
IUUC-Ame-010785 Astyanax mexicanus 89.47 7.00e-48 181.00
IUUC-Bgr-012115 Blumeria graminis 89.60 8.00e-63 231.00
IUUC-Bta-013360 Bos taurus 92.19 7.00e-67 244.00
IUUC-Bci-013851 Botrytis cinerea 90.62 1.00e-65 240.00
IUUC-Bdi-014499 Brachypodium distachyon 97.66 6.00e-71 258.00
IUUC-Bol-015961 Brassica oleracea 99.22 4.00e-72 261.00
IUUC-Cel-018677 Caenorhabditis elegans 89.06 2.00e-63 233.00
IUUC-Cja-019572 Callithrix jacchus 92.19 7.00e-67 244.00
IUUC-Cfa-020339 Canis familiaris 92.19 7.00e-67 244.00
IUUC-Cpo-021534 Cavia porcellus 92.19 7.00e-67 244.00
IUUC-Cre-022567 Chlamydomonas reinhardtii 93.75 1.00e-68 250.00
IUUC-Csa-023398 Chlorocebus sabaeus 92.19 7.00e-67 244.00
IUUC-Cin-025266 Ciona intestinalis 89.06 6.00e-65 238.00
IUUC-Csv-026105 Ciona savignyi 88.98 7.00e-65 238.00
IUUC-Cgl-026502 Colletotrichum gloeosporioides 90.40 1.00e-62 233.00
IUUC-Cne-026913 Cryptococcus neoformans 88.28 6.00e-64 234.00
IUUC-Cme-027344 Cyanidioschyzon merolae 91.11 3.00e-44 169.00
IUUC-Dre-028761 Danio rerio 91.41 3.00e-66 242.00
IUUC-Dno-028899 Dasypus novemcinctus 92.19 6.00e-67 244.00
IUUC-Dme-031588 Drosophila melanogaster 91.41 2.00e-66 243.00
IUUC-Ete-033120 Echinops telfairi 92.19 7.00e-67 244.00
IUUC-Eca-033787 Equus caballus 92.19 7.00e-67 244.00
IUUC-Fca-035725 Felis catus 92.19 7.00e-67 244.00
IUUC-Fox-037870 Fusarium oxysporum 90.62 1.00e-65 240.00
IUUC-Fso-038461 Fusarium solani 97.47 2.00e-41 159.00
IUUC-Gmo-039163 Gadus morhua 92.97 2.00e-67 246.00
IUUC-Ggr-040034 Gaeumannomyces graminis 90.62 8.00e-66 241.00
IUUC-Gga-040909 Gallus gallus 92.19 1.00e-66 244.00
IUUC-Gac-041640 Gasterosteus aculeatus 92.19 9.00e-67 244.00
IUUC-Gma-043254 Glycine max 99.22 1.00e-72 264.00
IUUC-Ggo-045411 Gorilla gorilla 92.19 7.00e-67 244.00
IUUC-Hsa-046609 Homo sapiens 72.99 2.00e-51 193.00
IUUC-Hvu-047579 Hordeum vulgare 70.59 2.00e-51 193.00
IUUC-Itr-048586 Ictidomys tridecemlineatus 92.19 4.00e-67 246.00
IUUC-Kpa-049279 Komagataella pastoris 90.62 8.00e-66 241.00
IUUC-Lch-049971 Latimeria chalumnae 92.97 3.00e-67 246.00
IUUC-Lpe-051472 Leersia perrieri 82.58 3.00e-53 202.00
IUUC-Loc-052117 Lepisosteus oculatus 92.19 7.00e-67 244.00
IUUC-Lma-053049 Leptosphaeria maculans 92.97 7.00e-67 244.00
IUUC-Laf-054284 Loxodonta africana 92.19 3.00e-67 246.00
IUUC-Mcc-055710 Macaca mulatta 90.77 2.00e-65 241.00
IUUC-Meu-056411 Macropus eugenii 92.19 7.00e-67 244.00
IUUC-Mor-057008 Magnaporthe oryzae 90.62 2.00e-65 239.00
IUUC-Mpo-057360 Magnaporthe poae 90.62 1.00e-65 240.00
IUUC-Mtr-058437 Medicago truncatula 98.44 2.00e-71 259.00
IUUC-Mla-059080 Melampsora laricipopulina 89.32 3.00e-49 185.00
IUUC-Mmr-061335 Microcebus murinus 86.72 2.00e-60 223.00
IUUC-Mdo-062752 Monodelphis domestica 92.19 7.00e-67 244.00
IUUC-Mmu-063548 Mus musculus 92.19 5.00e-67 246.00
IUUC-Mac-064915 Musa acuminata 98.44 1.00e-71 260.00
IUUC-Mpu-066513 Mustela putorius furo 92.19 7.00e-67 244.00
IUUC-Mlu-068010 Myotis lucifugus 89.84 3.00e-65 239.00
IUUC-Nfi-068358 Neosartorya fischeri 90.48 6.00e-64 234.00
IUUC-Ncr-068799 Neurospora crassa 90.62 2.00e-65 239.00
IUUC-Opr-070655 Ochotona princeps 92.19 7.00e-67 244.00
IUUC-Ont-072180 Oreochromis niloticus 92.86 5.00e-66 241.00
IUUC-Oan-073196 Ornithorhynchus anatinus 92.19 7.00e-67 244.00
IUUC-Oba-075092 Oryza barthii 98.44 2.00e-71 259.00
IUUC-Obr-076156 Oryza brachyantha 98.44 1.00e-71 260.00
IUUC-Ogl-077471 Oryza glaberrima 98.44 2.00e-71 259.00
IUUC-Ogu-078259 Oryza glumaepatula 98.44 2.00e-71 259.00
IUUC-Oin-079901 Oryza indica 98.44 2.00e-71 259.00
IUUC-Ome-081343 Oryza meridionalis 98.44 2.00e-71 259.00
IUUC-Oni-082301 Oryza nivara 83.17 2.00e-34 138.00
IUUC-Opu-083839 Oryza punctata 66.92 3.00e-37 149.00
IUUC-Oru-085252 Oryza rufipogon 98.44 2.00e-71 259.00
IUUC-Osa-085747 Oryza sativa 80.60 3.00e-52 196.00
IUUC-Ola-086333 Oryzias latipes 91.41 1.00e-66 243.00
IUUC-Olu-087819 Ostreococcus lucimarinus 85.16 2.00e-62 229.00
IUUC-Oga-088027 Otolemur garnettii 92.19 7.00e-67 244.00
IUUC-Oar-090419 Ovis aries 92.19 7.00e-67 244.00
IUUC-Ptr-091593 Pan troglodytes 92.19 7.00e-67 244.00
IUUC-Pan-091806 Papio anubis 89.84 1.00e-65 240.00
IUUC-Psi-093654 Pelodiscus sinensis 92.19 7.00e-67 244.00
IUUC-Ppa-095174 Physcomitrella patens 97.66 4.00e-71 258.00
IUUC-Pfo-096492 Poecilia formosa 92.19 1.00e-66 243.00
IUUC-Pab-098004 Pongo abelii 92.19 7.00e-67 244.00
IUUC-Pop-098929 Populus trichocarpa 98.44 1.00e-71 260.00
IUUC-Ppe-101497 Prunus persica 98.44 6.00e-72 261.00
IUUC-Pva-102945 Pteropus vampyrus 92.19 7.00e-67 244.00
IUUC-Pgr-103268 Puccinia graminis 89.84 2.00e-65 240.00
IUUC-Ptt-103804 Puccinia triticina 92.08 3.00e-51 192.00
IUUC-Pte-104101 Pyrenophora teres 91.41 3.00e-66 243.00
IUUC-Pyt-104639 Pyrenophora triticirepentis 91.41 6.00e-66 241.00
IUUC-Rno-105290 Rattus norvegicus 92.19 7.00e-67 244.00
IUUC-Sce-106249 Saccharomyces cerevisiae 89.84 3.00e-65 239.00
IUUC-Sha-106570 Sarcophilus harrisii 92.19 7.00e-67 244.00
IUUC-Sja-107834 Schizosaccharomyces japonicus 91.41 5.00e-66 241.00
IUUC-Spo-108045 Schizosaccharomyces pombe 90.62 3.00e-65 239.00
IUUC-Ssl-108670 Sclerotinia sclerotiorum 91.41 6.00e-66 241.00
IUUC-Sit-110085 Setaria italica 95.24 1.00e-69 254.00
IUUC-Sly-111884 Solanum lycopersicum 98.44 1.00e-71 260.00
IUUC-Stu-112385 Solanum tuberosum 97.52 2.00e-67 246.00
IUUC-Sar-112942 Sorex araneus 90.62 7.00e-66 241.00
IUUC-Sbi-114790 Sorghum bicolor 97.66 1.00e-70 256.00
IUUC-Sre-114908 Sporisorium reilianum 91.41 2.00e-65 239.00
IUUC-Ssc-116417 Sus scrofa 92.19 7.00e-67 244.00
IUUC-Tru-117557 Takifugu rubripes 92.97 2.00e-67 246.00
IUUC-Tni-119715 Tetraodon nigroviridis 92.97 2.00e-67 246.00
IUUC-Tca-121404 Theobroma cacao 99.22 5.00e-72 262.00
IUUC-Tvi-122611 Trichoderma virens 89.84 1.00e-65 240.00
IUUC-Tae-125373 Triticum aestivum 79.62 5.00e-66 242.00
IUUC-Tur-126527 Triticum urartu 97.66 6.00e-71 258.00
IUUC-Tme-127138 Tuber melanosporum 91.20 1.00e-64 237.00
IUUC-Ttr-128939 Tursiops truncatus 92.19 7.00e-67 244.00
IUUC-Uma-129619 Ustilago maydis 91.41 2.00e-65 239.00
IUUC-Vda-129775 Verticillium dahliae 88.89 2.00e-63 233.00
IUUC-Vvi-130859 Vitis vinifera 99.22 4.00e-72 261.00
IUUC-Xtr-131921 Xenopus tropicalis 92.19 7.00e-67 244.00
IUUC-Xma-134071 Xiphophorus maculatus 92.19 1.00e-66 243.00
IUUC-Yli-134671 Yarrowia lipolytica 90.62 2.00e-65 239.00
Created Date 25-Jun-2017

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