iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114288

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog

Genbank Nucleotide ID

CM000761

Gene Name

SORBI_002G092300

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb02g007630	Sb02g007630.1	Sb02g007630.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.60e-45	150.4	206	238
UBD/Beta-Prp	1.20e-51	176.5	64	345

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlr 31
           gH++ v++l+f   ++++v++sdD t+k+WD++
   Q: 206  GHSSTVWALSFnfKGDRMVTCSDDQTLKIWDTS 238
           8**********9755899*************75 PP

UBD/Beta-Prp

   S: 5    lkghhksvitcvkfspdksllatgsrdgtikvwdvttgkl..lrslsgheaevtavkfspdgkilvtgseDrtikvw...dlstgkcvhtlkghed 95
           l+++h   +++ ++sp++++latgs d+t+ vw+++ g++  +++l+ghe+ev++v++sp+g++l+t+s+D+t+ +w   + + ++c ++l+gh++
   Q: 64   LEDTHNRTVRSCAWSPNGKMLATGSFDATTAVWEYKGGDFecVATLEGHENEVKSVSWSPSGSLLATCSRDKTAWIWevlPGNEFECASVLTGHTQ 159
           788999999999**************************9999***********************************666667************* PP
   S: 96   svlslsfspsgdklvsGshdrtirvwdletgqclee.......tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl.............ktgkl 171
           +v  ++++p  d lvs s d+tirvw  + + + +         + gh+++v+ ++++ +g+ +v++s+D+t+++Wd              ++ + 
   Q: 160  DVKMVQWHPVLDILVSVSYDNTIRVWADDGDDEWHCvqtlteaNNCGHSSTVWALSFNFKGDRMVTCSDDQTLKIWDTsadlsqpktgeghESWQH 255
           **************************88766555445559998999***************************************99999999999 PP
   S: 172  lrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec.........vrtlnghtdnvksvrfs.pnderlvsgssDgsiriWdlr 252
           l tltg+h + + s  ++s+   ++sg+ d  + l+  +++++         +++ ++h   ++svr + ++  +l+s+s+Dg +++W lr
   Q: 256  LSTLTGYHGRTIFSAHWSSE-DIIASGAGDDAICLFTEEKSTMverpsyrliLKKEKAHVMDINSVRWCpQDPRLLASASDDGMVKLWELR 345
           9999***************8.6****************97777788888888*****************55556678999********887 PP

Organism

Sorghum bicolor

Functional Description
(View)

Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.

Protein Sequence
(Fasta)

MDGGASELRE AHRLTGHGDR VWALAWNPAP GPGSGPVLAS CSGDKTVRIW KRAPDGAWQC 60
SDVLEDTHNR TVRSCAWSPN GKMLATGSFD ATTAVWEYKG GDFECVATLE GHENEVKSVS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTCCTCCGA GTGACCGTAC GCCGTAGCCC CCCCGAAACC CTAGGGGCGC CGCTGACTCG 60
CCGGAGGCCC AGCCATGGAC GGCGGCGCGT CGGAGCTGCG CGAGGCCCAC CGCCTGACGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR028608--CIAO1/Cia1
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0097361--C:CIA complex
GO:0043231--C:intracellular membrane-bounded organelle
GO:0004519--F:endonuclease activity
GO:0003723--F:RNA binding
GO:0016226--P:iron-sulfur cluster assembly
GO:0009451--P:RNA modification

KEGG

sbi:SORBI_02g007610

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000874	Aegilops tauschii	68.96	4.00e-141	494.00
IUUC-Aml-001317	Ailuropoda melanoleuca	49.55	3.00e-77	280.00
IUUC-Atr-003029	Amborella trichopoda	68.21	2.00e-133	467.00
IUUC-Aly-006458	Arabidopsis lyrata	64.72	5.00e-128	449.00
IUUC-Ath-006671	Arabidopsis thaliana	65.01	2.00e-128	450.00
IUUC-Ago-007820	Ashbya gossypii	38.51	1.00e-55	209.00
IUUC-Acl-008042	Aspergillus clavatus	30.93	2.00e-43	169.00
IUUC-Afl-008639	Aspergillus flavus	32.08	1.00e-45	176.00
IUUC-Afu-008899	Aspergillus fumigatus	30.29	1.00e-43	169.00
IUUC-Ani-009453	Aspergillus nidulans	30.42	3.00e-41	161.00
IUUC-Ang-009758	Aspergillus niger	33.67	2.00e-45	175.00
IUUC-Aor-010212	Aspergillus oryzae	32.08	1.00e-45	176.00
IUUC-Ate-010314	Aspergillus terreus	31.22	6.00e-43	167.00
IUUC-Ame-010676	Astyanax mexicanus	47.37	2.00e-86	311.00
IUUC-Bgr-012095	Blumeria graminis	28.43	9.00e-36	143.00
IUUC-Bta-012884	Bos taurus	48.66	4.00e-77	280.00
IUUC-Bci-013622	Botrytis cinerea	28.91	1.00e-31	129.00
IUUC-Bdi-014614	Brachypodium distachyon	85.39	1.00e-180	624.00
IUUC-Bol-016439	Brassica oleracea	66.28	7.00e-119	419.00
IUUC-Bra-016830	Brassica rapa	66.76	1.00e-119	421.00
IUUC-Cel-018709	Caenorhabditis elegans	39.82	1.00e-55	209.00
IUUC-Cja-019822	Callithrix jacchus	48.07	2.00e-77	281.00
IUUC-Cfa-020823	Canis familiaris	48.96	3.00e-77	280.00
IUUC-Cre-022811	Chlamydomonas reinhardtii	49.28	2.00e-86	311.00
IUUC-Csa-023754	Chlorocebus sabaeus	48.09	2.00e-77	281.00
IUUC-Cin-025395	Ciona intestinalis	45.83	4.00e-80	290.00
IUUC-Csv-025943	Ciona savignyi	45.03	3.00e-77	280.00
IUUC-Cgl-026435	Colletotrichum gloeosporioides	30.63	2.00e-36	145.00
IUUC-Cne-026939	Cryptococcus neoformans	31.32	3.00e-48	184.00
IUUC-Cme-027239	Cyanidioschyzon merolae	39.15	6.00e-42	164.00
IUUC-Dre-028172	Danio rerio	48.99	5.00e-88	316.00
IUUC-Dno-029472	Dasypus novemcinctus	48.12	1.00e-68	251.00
IUUC-Dor-031134	Dipodomys ordii	42.09	2.00e-60	225.00
IUUC-Dse-031535	Dothistroma septosporum	29.67	2.00e-40	159.00
IUUC-Dme-032020	Drosophila melanogaster	48.07	4.00e-86	310.00
IUUC-Eca-033700	Equus caballus	48.68	7.00e-78	283.00
IUUC-Eeu-035010	Erinaceus europaeus	47.18	9.00e-73	266.00
IUUC-Fca-036309	Felis catus	43.86	3.00e-70	257.00
IUUC-Fal-037243	Ficedula albicollis	51.79	2.00e-54	204.00
IUUC-Fox-038058	Fusarium oxysporum	31.52	5.00e-39	155.00
IUUC-Fso-038459	Fusarium solani	31.01	6.00e-38	150.00
IUUC-Gmo-039375	Gadus morhua	46.57	2.00e-78	284.00
IUUC-Ggr-040002	Gaeumannomyces graminis	33.52	9.00e-37	147.00
IUUC-Gga-040294	Gallus gallus	46.98	1.00e-61	229.00
IUUC-Gac-042499	Gasterosteus aculeatus	46.47	3.00e-77	280.00
IUUC-Gma-043543	Glycine max	66.86	5.00e-131	459.00
IUUC-Ggo-045181	Gorilla gorilla	48.09	2.00e-77	281.00
IUUC-Hsa-046528	Homo sapiens	48.09	2.00e-77	281.00
IUUC-Hvu-047341	Hordeum vulgare	82.67	2.00e-100	357.00
IUUC-Itr-048790	Ictidomys tridecemlineatus	48.39	4.00e-78	283.00
IUUC-Kpa-049353	Komagataella pastoris	36.91	2.00e-52	198.00
IUUC-Lch-049763	Latimeria chalumnae	48.67	8.00e-83	299.00
IUUC-Lpe-051500	Leersia perrieri	78.91	2.00e-178	617.00
IUUC-Loc-052021	Lepisosteus oculatus	47.98	6.00e-78	283.00
IUUC-Lma-053331	Leptosphaeria maculans	31.46	5.00e-43	169.00
IUUC-Laf-054558	Loxodonta africana	48.07	5.00e-76	276.00
IUUC-Mcc-055374	Macaca mulatta	48.96	4.00e-78	283.00
IUUC-Meu-056042	Macropus eugenii	52.29	5.00e-52	196.00
IUUC-Mor-057187	Magnaporthe oryzae	31.76	4.00e-45	174.00
IUUC-Mtr-058072	Medicago truncatula	66.57	2.00e-127	447.00
IUUC-Mla-059108	Melampsora laricipopulina	33.11	2.00e-56	212.00
IUUC-Mga-059370	Meleagris gallopavo	39.31	4.00e-43	167.00
IUUC-Mvi-060495	Microbotryum violaceum	33.94	3.00e-56	211.00
IUUC-Mmr-060902	Microcebus murinus	48.07	3.00e-77	280.00
IUUC-Mdo-062510	Monodelphis domestica	48.39	3.00e-75	274.00
IUUC-Mmu-063575	Mus musculus	48.67	2.00e-78	284.00
IUUC-Mac-065322	Musa acuminata	72.43	3.00e-146	510.00
IUUC-Mpu-065925	Mustela putorius furo	48.96	4.00e-77	280.00
IUUC-Mlu-067755	Myotis lucifugus	47.80	1.00e-75	275.00
IUUC-Nfi-068327	Neosartorya fischeri	29.91	2.00e-41	162.00
IUUC-Ncr-068845	Neurospora crassa	28.57	4.00e-34	138.00
IUUC-Nle-069406	Nomascus leucogenys	47.21	1.00e-74	272.00
IUUC-Opr-070416	Ochotona princeps	59.87	9.00e-41	159.00
IUUC-Ont-071936	Oreochromis niloticus	46.76	5.00e-78	283.00
IUUC-Oan-073452	Ornithorhynchus anatinus	50.88	6.00e-37	145.00
IUUC-Ocu-074791	Oryctolagus cuniculus	47.80	1.00e-76	278.00
IUUC-Oba-075636	Oryza barthii	86.89	0.00e+00	635.00
IUUC-Obr-076742	Oryza brachyantha	87.24	3.00e-153	533.00
IUUC-Ogl-077766	Oryza glaberrima	86.89	0.00e+00	635.00
IUUC-Ogu-079039	Oryza glumaepatula	86.53	0.00e+00	634.00
IUUC-Oin-079315	Oryza indica	79.55	1.00e-160	557.00
IUUC-Olo-080669	Oryza longistaminata	75.88	7.00e-175	605.00
IUUC-Ome-081490	Oryza meridionalis	86.89	0.00e+00	634.00
IUUC-Oni-082572	Oryza nivara	86.89	0.00e+00	635.00
IUUC-Opu-083732	Oryza punctata	85.75	0.00e+00	629.00
IUUC-Oru-084763	Oryza rufipogon	86.89	0.00e+00	635.00
IUUC-Osa-085372	Oryza sativa	86.89	0.00e+00	635.00
IUUC-Ola-087379	Oryzias latipes	47.04	2.00e-77	281.00
IUUC-Olu-087801	Ostreococcus lucimarinus	40.06	9.00e-56	209.00
IUUC-Oga-089076	Otolemur garnettii	47.51	4.00e-76	277.00
IUUC-Oar-090022	Ovis aries	48.96	1.00e-77	281.00
IUUC-Ptr-090809	Pan troglodytes	48.09	2.00e-77	281.00
IUUC-Pan-091685	Papio anubis	48.09	9.00e-78	283.00
IUUC-Psi-093046	Pelodiscus sinensis	47.80	6.00e-78	283.00
IUUC-Pma-094181	Petromyzon marinus	50.00	8.00e-88	316.00
IUUC-Pno-094882	Phaeosphaeria nodorum	31.12	8.00e-44	170.00
IUUC-Ppa-095172	Physcomitrella patens	59.31	3.00e-111	394.00
IUUC-Pfo-096396	Poecilia formosa	46.96	3.00e-80	290.00
IUUC-Pab-098427	Pongo abelii	47.65	4.00e-77	280.00
IUUC-Pop-100016	Populus trichocarpa	68.80	6.00e-137	479.00
IUUC-Pca-101048	Procavia capensis	48.66	2.00e-77	281.00
IUUC-Ppe-102050	Prunus persica	65.71	5.00e-130	456.00
IUUC-Pva-103117	Pteropus vampyrus	48.37	4.00e-77	280.00
IUUC-Pgr-103307	Puccinia graminis	33.55	8.00e-57	213.00
IUUC-Ptt-103938	Puccinia triticina	37.91	1.00e-44	172.00
IUUC-Pte-104315	Pyrenophora teres	31.49	7.00e-44	170.00
IUUC-Pyt-104825	Pyrenophora triticirepentis	30.66	2.00e-42	166.00
IUUC-Rno-105523	Rattus norvegicus	48.08	5.00e-77	280.00
IUUC-Sce-106297	Saccharomyces cerevisiae	34.99	3.00e-51	194.00
IUUC-Sha-106981	Sarcophilus harrisii	48.81	5.00e-65	239.00
IUUC-Sja-107715	Schizosaccharomyces japonicus	40.12	3.00e-57	215.00
IUUC-Spo-108214	Schizosaccharomyces pombe	35.84	8.00e-54	204.00
IUUC-Smo-109034	Selaginella moellendorffii	52.81	1.00e-99	355.00
IUUC-Sit-110663	Setaria italica	88.67	0.00e+00	642.00
IUUC-Sly-110898	Solanum lycopersicum	67.06	4.00e-126	443.00
IUUC-Stu-112647	Solanum tuberosum	65.43	7.00e-102	362.00
IUUC-Sre-115065	Sporisorium reilianum	39.25	4.00e-69	254.00
IUUC-Ssc-115960	Sus scrofa	45.16	4.00e-78	283.00
IUUC-Tru-118382	Takifugu rubripes	49.41	1.00e-89	322.00
IUUC-Tsy-119585	Tarsius syrichta	43.32	3.00e-64	237.00
IUUC-Tni-120133	Tetraodon nigroviridis	47.23	8.00e-82	296.00
IUUC-Tca-121167	Theobroma cacao	67.73	2.00e-128	451.00
IUUC-Tre-122119	Trichoderma reesei	29.72	3.00e-36	145.00
IUUC-Tvi-122407	Trichoderma virens	29.37	3.00e-39	155.00
IUUC-Tae-125748	Triticum aestivum	84.29	2.00e-171	593.00
IUUC-Tur-126176	Triticum urartu	70.11	7.00e-137	478.00
IUUC-Tme-127095	Tuber melanosporum	34.18	8.00e-51	193.00
IUUC-Tbe-128004	Tupaia belangeri	48.38	2.00e-76	278.00
IUUC-Ttr-129284	Tursiops truncatus	46.36	8.00e-74	269.00
IUUC-Uma-129527	Ustilago maydis	38.60	3.00e-69	254.00
IUUC-Vda-129854	Verticillium dahliae	30.71	2.00e-37	149.00
IUUC-Vpa-130681	Vicugna pacos	66.07	1.00e-31	129.00
IUUC-Vvi-131004	Vitis vinifera	69.41	2.00e-131	460.00
IUUC-Xtr-131928	Xenopus tropicalis	48.97	2.00e-78	285.00
IUUC-Xma-134290	Xiphophorus maculatus	46.96	7.00e-79	286.00
IUUC-Yli-134364	Yarrowia lipolytica	40.11	2.00e-56	211.00
IUUC-Zma-135658	Zea mays	93.14	0.00e+00	672.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence