iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Itr-048712

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ubiquitinyl hydrolase 1

Genbank Nucleotide ID

AGTP01097465

Gene Name

USP5

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSTOG00000015589.2	ENSSTOT00000015592.2	ENSSTOP00000013955.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.40e-63	215.1	326	856
UBD/Alpha-Helix/UBA	1.00e-22	79.6	726	763

Active Site

Position(s)	Description	Evidence
335	Nucleophile	{ECO:0000256\|PIRSR:PIRSR016308-1}
819	Proton acceptor	{ECO:0000256\|PIRSR:PIRSR016308-1}

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeel....................wkskkkavs 69
           tG++NlgN+CY+NSv+Q+L++ip++++ + + k ek+ +++p++p+++++++++kl + l                    +k+ +  ++
   Q: 326  TGIRNLGNSCYLNSVVQVLFSIPDFQRKYVD-KLEKIFQNAPTDPTQDFSTQVAKLGHGLlsgeyskpapesgdgeqvpeQKEVQDGIA 413
           7******************************.99999999********************66666666666666655443366666*** PP
   S: 70   prellkalkkeaeefsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikcle 158
           pr++++ ++k ++efs+++qqDaqEf+ +l++ +e+++                             ++++  +++F++ ++++ikcl+
   Q: 414  PRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNC-----------------------------RSSENPNEVFRFLVEEKIKCLA 473
           **************************************.............................6788899*************** PP
   S: 159  cdnvssreepfldlslpvpgkeetkke............................slqdcLesftkeeelegenkyycekckkkqeaek 219
            ++v+ ++   + ++lpvp++   +k                              +++cLe++ ++e++++   ++++  ++k+ a+k
   Q: 474  TEKVKYTQRVDYIMQLPVPMDAALNKAeelleyeekkrqaeeekvplpelvraqvPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVK 559
           ********************998887799*****************************************97...************** PP
   S: 220  klklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfcts......................................... 267
           ++++ ++P++L++++k+f+f  + ++++k++ ++e+p+eLd+s+   +                                         
   Q: 560  TTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLRGTglqpgeeelpdiapplvtpdepkgslgfygnededsfcsph 647
           ********************997.*******************9888878888888888888888888888888888888877777777 PP
   S: 268  ..................................................................................peekqke 274
                                                                                             +     +
   Q: 648  fssptspmldesviiqlvemgfpmdacrkavyytgnsgaeaamnwvmshmddpdfanplilpgssgpgstsaaadpppedcvT-----T 731
           77777777777777777777777777777777777666666666666666666666666666666665555555555555550.....0 PP
   S: 275  ...................................................................kkkYeLiavvvHsG.slssGHY 295
                                                                              + kY+L+a ++H+G s+ +GHY
   Q: 732  ivsmgfsrdqalkalratnnsleravdwifshiddldaeaamdisegrsaadsisesvpvgpkvrdgPGKYQLFAFISHMGtSTMCGHY 820
           5555555555555566666666667777777777777777777777777778888888888888888********************** PP
   S: 296  vayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
           v+++k+ +g+W+ ++D+kV ++  e+  +   + +Y++fY+r
   Q: 821  VCHIKK-EGRWVIYNDQKVCAS--EKPPK---DLGYIYFYQR 856
           ******.9***********999..78888...89******98 PP

UBD/Alpha-Helix/UBA

   S: 4    edkleqlveMGFdreealqaLraannnleaAveyLldg 41
           ed +  +v+MGF+r++al+aLra+nn+le+Av++++++
   Q: 726  EDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH 763
           889999******************************97 PP

Organism

Ictidomys tridecemlineatus

Protein Sequence
(Fasta)

MAELSEEALL SVLPTIRVPK AGDRVHKDEC AFSFDTPESE GGLYICMNTF LGFGKQYVER 60
HFNKTGQRVY LHLRRTRRPK EEDTTAGTGD PPRKKPTRLA IGVEGGFDLT EEKFEYDEDV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGACTGGGA ACGGTGGGAG CCGCCGTGTG TGGAGGAGCT GCTGCCGGTG TCATGGCGGA 60
GCTGAGTGAG GAGGCGCTGC TGTCAGTGTT ACCGACTATC CGGGTCCCCA AGGCTGGAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1015--Disulfide bond
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0645--Protease
KW-1185--Reference proteome
KW-0788--Thiol protease
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001394--Peptidase_C19_UCH
IPR015940--UBA
IPR009060--UBA-like
IPR016652--Ubiquitinyl_hydrolase
IPR018200--USP_CS
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS50030--UBA
PS00972--USP_1
PS00973--USP_2
PS50235--USP_3
PS50271--ZF_UBP

Pfam

PF00627--UBA
PF00443--UCH
PF02148--zf-UBP

SMART

SM00165--UBA
SM00290--ZnF_UBP

Gene Ontology

GO:0004843--F:thiol-dependent ubiquitin-specific protease activity
GO:0008270--F:zinc ion binding
GO:0032436--P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0071108--P:protein K48-linked deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000394	Aegilops tauschii	44.43	0.00e+00	659.00
IUUC-Aml-002104	Ailuropoda melanoleuca	97.88	0.00e+00	1646.00
IUUC-Atr-002580	Amborella trichopoda	46.09	0.00e+00	745.00
IUUC-Apl-003774	Anas platyrhynchos	90.46	0.00e+00	1538.00
IUUC-Aca-005368	Anolis carolinensis	85.22	0.00e+00	1515.00
IUUC-Aly-005727	Arabidopsis lyrata	47.28	0.00e+00	738.00
IUUC-Ath-006974	Arabidopsis thaliana	47.38	0.00e+00	739.00
IUUC-Ago-007890	Ashbya gossypii	29.11	1.00e-82	300.00
IUUC-Acl-008057	Aspergillus clavatus	33.68	9.00e-125	440.00
IUUC-Afl-008547	Aspergillus flavus	36.26	8.00e-118	417.00
IUUC-Afu-008805	Aspergillus fumigatus	34.60	1.00e-115	410.00
IUUC-Ani-009441	Aspergillus nidulans	32.61	6.00e-99	354.00
IUUC-Ang-009720	Aspergillus niger	34.30	4.00e-120	425.00
IUUC-Aor-010111	Aspergillus oryzae	34.18	1.00e-127	449.00
IUUC-Ate-010531	Aspergillus terreus	32.18	2.00e-104	373.00
IUUC-Ame-011893	Astyanax mexicanus	64.51	0.00e+00	996.00
IUUC-Bgr-012183	Blumeria graminis	33.41	5.00e-122	431.00
IUUC-Bta-013179	Bos taurus	98.23	0.00e+00	1653.00
IUUC-Bci-013858	Botrytis cinerea	34.92	6.00e-132	464.00
IUUC-Bdi-014904	Brachypodium distachyon	47.09	0.00e+00	723.00
IUUC-Bol-015296	Brassica oleracea	47.67	0.00e+00	749.00
IUUC-Bra-017939	Brassica rapa	47.67	0.00e+00	753.00
IUUC-Cel-018625	Caenorhabditis elegans	34.81	1.00e-135	477.00
IUUC-Cja-019063	Callithrix jacchus	97.88	0.00e+00	1634.00
IUUC-Cfa-020976	Canis familiaris	95.75	0.00e+00	1599.00
IUUC-Cpo-022265	Cavia porcellus	96.11	0.00e+00	1597.00
IUUC-Cre-022640	Chlamydomonas reinhardtii	39.39	5.00e-113	401.00
IUUC-Csa-024177	Chlorocebus sabaeus	95.18	0.00e+00	1458.00
IUUC-Cho-024702	Choloepus hoffmanni	88.97	0.00e+00	993.00
IUUC-Cin-025411	Ciona intestinalis	50.24	0.00e+00	845.00
IUUC-Csv-026347	Ciona savignyi	46.41	0.00e+00	803.00
IUUC-Cgl-026667	Colletotrichum gloeosporioides	34.52	2.00e-114	406.00
IUUC-Cne-026831	Cryptococcus neoformans	35.52	1.00e-129	457.00
IUUC-Dre-027982	Danio rerio	67.40	0.00e+00	1105.00
IUUC-Dno-029034	Dasypus novemcinctus	98.23	0.00e+00	1667.00
IUUC-Dor-030479	Dipodomys ordii	93.67	0.00e+00	715.00
IUUC-Dse-031467	Dothistroma septosporum	36.37	4.00e-132	465.00
IUUC-Dme-032075	Drosophila melanogaster	49.25	0.00e+00	802.00
IUUC-Ete-032865	Echinops telfairi	86.73	0.00e+00	1466.00
IUUC-Eca-034059	Equus caballus	98.25	0.00e+00	1664.00
IUUC-Eeu-035304	Erinaceus europaeus	92.10	0.00e+00	1499.00
IUUC-Fca-035515	Felis catus	98.47	0.00e+00	1659.00
IUUC-Fal-037271	Ficedula albicollis	87.08	0.00e+00	1439.00
IUUC-Fox-037745	Fusarium oxysporum	35.31	2.00e-129	456.00
IUUC-Fso-038158	Fusarium solani	36.00	6.00e-129	454.00
IUUC-Gmo-039071	Gadus morhua	65.22	0.00e+00	1086.00
IUUC-Ggr-040098	Gaeumannomyces graminis	34.56	6.00e-120	424.00
IUUC-Gga-040635	Gallus gallus	90.22	0.00e+00	1607.00
IUUC-Gac-042528	Gasterosteus aculeatus	64.19	0.00e+00	1096.00
IUUC-Gma-043614	Glycine max	46.62	0.00e+00	712.00
IUUC-Ggo-044602	Gorilla gorilla	98.23	0.00e+00	1650.00
IUUC-Hsa-045959	Homo sapiens	98.23	0.00e+00	1650.00
IUUC-Hvu-047563	Hordeum vulgare	47.23	1.00e-171	596.00
IUUC-Kpa-049156	Komagataella pastoris	33.49	1.00e-115	410.00
IUUC-Lch-049648	Latimeria chalumnae	81.96	0.00e+00	1382.00
IUUC-Lpe-051523	Leersia perrieri	46.77	0.00e+00	726.00
IUUC-Loc-052520	Lepisosteus oculatus	62.08	0.00e+00	1021.00
IUUC-Lma-053216	Leptosphaeria maculans	34.76	5.00e-115	409.00
IUUC-Laf-054327	Loxodonta africana	97.64	0.00e+00	1644.00
IUUC-Mcc-055443	Macaca mulatta	98.11	0.00e+00	1649.00
IUUC-Meu-056298	Macropus eugenii	92.20	0.00e+00	1071.00
IUUC-Mor-057106	Magnaporthe oryzae	35.13	8.00e-131	461.00
IUUC-Mpo-057589	Magnaporthe poae	34.75	4.00e-124	438.00
IUUC-Mtr-058680	Medicago truncatula	48.54	0.00e+00	743.00
IUUC-Mla-058903	Melampsora laricipopulina	32.54	1.00e-121	430.00
IUUC-Mga-059669	Meleagris gallopavo	89.35	0.00e+00	1525.00
IUUC-Mvi-060476	Microbotryum violaceum	34.54	3.00e-120	426.00
IUUC-Mmr-060575	Microcebus murinus	98.47	0.00e+00	1658.00
IUUC-Mdo-062183	Monodelphis domestica	92.33	0.00e+00	1548.00
IUUC-Mmu-063592	Mus musculus	98.82	0.00e+00	1662.00
IUUC-Mac-065634	Musa acuminata	42.90	0.00e+00	696.00
IUUC-Mpu-066082	Mustela putorius furo	94.93	0.00e+00	1583.00
IUUC-Mlu-067345	Myotis lucifugus	97.06	0.00e+00	1623.00
IUUC-Nfi-068558	Neosartorya fischeri	35.38	5.00e-124	438.00
IUUC-Ncr-068960	Neurospora crassa	34.96	9.00e-117	414.00
IUUC-Nle-070173	Nomascus leucogenys	95.52	0.00e+00	1589.00
IUUC-Opr-070556	Ochotona princeps	97.64	0.00e+00	1652.00
IUUC-Ont-071502	Oreochromis niloticus	64.85	0.00e+00	1092.00
IUUC-Ocu-074861	Oryctolagus cuniculus	95.99	0.00e+00	1604.00
IUUC-Oba-075109	Oryza barthii	46.49	0.00e+00	728.00
IUUC-Obr-076292	Oryza brachyantha	47.66	0.00e+00	721.00
IUUC-Ogl-077065	Oryza glaberrima	47.78	0.00e+00	758.00
IUUC-Ogu-078776	Oryza glumaepatula	46.49	0.00e+00	741.00
IUUC-Oin-080048	Oryza indica	47.31	0.00e+00	752.00
IUUC-Olo-080711	Oryza longistaminata	44.66	0.00e+00	671.00
IUUC-Ome-081506	Oryza meridionalis	45.71	0.00e+00	683.00
IUUC-Oni-082320	Oryza nivara	45.93	0.00e+00	727.00
IUUC-Opu-083801	Oryza punctata	46.67	0.00e+00	721.00
IUUC-Oru-085139	Oryza rufipogon	45.93	0.00e+00	728.00
IUUC-Osa-085713	Oryza sativa	47.90	0.00e+00	761.00
IUUC-Ola-086951	Oryzias latipes	65.69	0.00e+00	1088.00
IUUC-Olu-087822	Ostreococcus lucimarinus	41.27	0.00e+00	632.00
IUUC-Oga-088625	Otolemur garnettii	98.82	0.00e+00	1648.00
IUUC-Oar-089995	Ovis aries	97.41	0.00e+00	1637.00
IUUC-Ptr-090640	Pan troglodytes	95.99	0.00e+00	1640.00
IUUC-Pan-091974	Papio anubis	98.24	0.00e+00	1640.00
IUUC-Psi-093957	Pelodiscus sinensis	90.13	0.00e+00	1607.00
IUUC-Pma-094242	Petromyzon marinus	71.99	1.00e-166	578.00
IUUC-Pno-094835	Phaeosphaeria nodorum	34.98	3.00e-108	385.00
IUUC-Ppa-095901	Physcomitrella patens	48.91	0.00e+00	788.00
IUUC-Pfo-097148	Poecilia formosa	66.20	0.00e+00	1102.00
IUUC-Pab-098068	Pongo abelii	90.57	0.00e+00	1470.00
IUUC-Pop-098943	Populus trichocarpa	47.20	0.00e+00	727.00
IUUC-Pca-100738	Procavia capensis	98.01	0.00e+00	1141.00
IUUC-Ppe-101315	Prunus persica	47.33	0.00e+00	733.00
IUUC-Pva-102154	Pteropus vampyrus	96.58	0.00e+00	1625.00
IUUC-Pgr-103343	Puccinia graminis	33.61	2.00e-110	393.00
IUUC-Ptt-103928	Puccinia triticina	30.73	2.00e-107	382.00
IUUC-Pte-104306	Pyrenophora teres	32.64	2.00e-105	376.00
IUUC-Pyt-104696	Pyrenophora triticirepentis	33.76	3.00e-108	385.00
IUUC-Rno-105801	Rattus norvegicus	98.47	0.00e+00	1657.00
IUUC-Sce-106304	Saccharomyces cerevisiae	28.44	2.00e-73	270.00
IUUC-Sha-107635	Sarcophilus harrisii	91.16	0.00e+00	1551.00
IUUC-Sja-107678	Schizosaccharomyces japonicus	32.33	2.00e-109	389.00
IUUC-Spo-108144	Schizosaccharomyces pombe	32.22	1.00e-113	403.00
IUUC-Smo-108848	Selaginella moellendorffii	47.95	0.00e+00	743.00
IUUC-Sit-110728	Setaria italica	48.14	0.00e+00	779.00
IUUC-Sly-111523	Solanum lycopersicum	47.27	0.00e+00	765.00
IUUC-Sbi-114419	Sorghum bicolor	47.26	0.00e+00	760.00
IUUC-Sre-115225	Sporisorium reilianum	35.06	1.00e-127	450.00
IUUC-Ssc-115686	Sus scrofa	98.47	0.00e+00	1654.00
IUUC-Tgu-117346	Taeniopygia guttata	89.88	0.00e+00	1577.00
IUUC-Tru-118350	Takifugu rubripes	65.31	0.00e+00	1113.00
IUUC-Tni-120658	Tetraodon nigroviridis	66.40	0.00e+00	1102.00
IUUC-Tca-121585	Theobroma cacao	47.85	0.00e+00	732.00
IUUC-Tre-122043	Trichoderma reesei	34.53	1.00e-119	423.00
IUUC-Tvi-122303	Trichoderma virens	34.69	2.00e-126	446.00
IUUC-Tae-125686	Triticum aestivum	47.31	0.00e+00	741.00
IUUC-Tur-126732	Triticum urartu	44.84	0.00e+00	696.00
IUUC-Tme-126909	Tuber melanosporum	34.75	3.00e-120	425.00
IUUC-Tbe-127261	Tupaia belangeri	90.70	0.00e+00	1035.00
IUUC-Uma-129599	Ustilago maydis	34.13	3.00e-131	462.00
IUUC-Vda-129688	Verticillium dahliae	33.57	1.00e-120	427.00
IUUC-Vvi-131116	Vitis vinifera	47.50	0.00e+00	711.00
IUUC-Xtr-131953	Xenopus tropicalis	79.06	0.00e+00	1360.00
IUUC-Xma-133837	Xiphophorus maculatus	66.43	0.00e+00	1106.00
IUUC-Yli-134510	Yarrowia lipolytica	35.45	2.00e-130	459.00
IUUC-Zma-135786	Zea mays	47.38	0.00e+00	728.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence