iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000020643.7	ENSRNOT00000028020.5	ENSRNOP00000028020.5
ENSRNOG00000020643.7	ENSRNOT00000087065.1	ENSRNOP00000068979.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-13	50.6	107	140

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           H ++++c+++ ++ + +v+Gs+D t+k+WD+rt 
   Q: 107  HDAPIRCVEYcPEvNVMVTGSWDQTVKLWDPRTP 140
           999********999****************9985 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MDASLDQGGP ARCAGAGPGP PLLLRDSILA FVLQMTGSNE FKLNQPPEDG ISSVKFSPNT 60
SQFLLVSSWD TSVRLYDVPA NSMRLKYQHT GAVLDCAFYV ENLVGTHDAP IRCVEYCPEV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TATATTTTAT AAAACCTGCA ATTCCTCCGA GGTGACTTCA GATGGATGCT ACTCAAGAAT 60
GCACCCGACA ATACTAGGTT GGTTGACTTG CATTTATTTT ATTTTAGCTG TGTTCACATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000423	Aegilops tauschii	31.78	2.00e-27	115.00
IUUC-Aml-002418	Ailuropoda melanoleuca	62.15	9.00e-103	366.00
IUUC-Apl-003201	Anas platyrhynchos	59.33	7.00e-99	353.00
IUUC-Aca-004657	Anolis carolinensis	61.04	5.00e-101	360.00
IUUC-Ame-011039	Astyanax mexicanus	51.23	1.00e-83	302.00
IUUC-Bta-012959	Bos taurus	62.27	2.00e-103	369.00
IUUC-Cja-018807	Callithrix jacchus	62.15	5.00e-103	367.00
IUUC-Cfa-020279	Canis familiaris	60.76	1.00e-71	262.00
IUUC-Cpo-022411	Cavia porcellus	62.46	3.00e-103	367.00
IUUC-Csa-024046	Chlorocebus sabaeus	65.43	1.00e-82	299.00
IUUC-Cho-024930	Choloepus hoffmanni	62.15	2.00e-102	365.00
IUUC-Cin-025561	Ciona intestinalis	45.45	3.00e-68	251.00
IUUC-Csv-026129	Ciona savignyi	44.31	2.00e-66	245.00
IUUC-Dre-028257	Danio rerio	50.61	6.00e-72	264.00
IUUC-Dno-029433	Dasypus novemcinctus	62.58	1.00e-103	369.00
IUUC-Dor-030318	Dipodomys ordii	62.15	1.00e-102	365.00
IUUC-Dme-031609	Drosophila melanogaster	35.71	1.00e-47	183.00
IUUC-Ete-032903	Echinops telfairi	56.42	7.00e-42	164.00
IUUC-Eca-034333	Equus caballus	62.46	3.00e-103	367.00
IUUC-Fca-035848	Felis catus	62.46	3.00e-103	367.00
IUUC-Fal-037239	Ficedula albicollis	59.51	1.00e-99	356.00
IUUC-Gmo-039586	Gadus morhua	51.39	6.00e-83	300.00
IUUC-Gga-040565	Gallus gallus	59.88	4.00e-99	354.00
IUUC-Gac-041299	Gasterosteus aculeatus	50.46	3.00e-81	295.00
IUUC-Ggo-045135	Gorilla gorilla	62.46	3.00e-103	367.00
IUUC-Hsa-045788	Homo sapiens	62.46	3.00e-103	367.00
IUUC-Itr-048845	Ictidomys tridecemlineatus	62.35	7.00e-103	366.00
IUUC-Lch-050423	Latimeria chalumnae	55.75	2.00e-95	342.00
IUUC-Loc-052148	Lepisosteus oculatus	54.41	5.00e-90	324.00
IUUC-Laf-054429	Loxodonta africana	62.04	2.00e-102	365.00
IUUC-Mcc-055649	Macaca mulatta	62.46	3.00e-103	367.00
IUUC-Meu-056019	Macropus eugenii	63.09	1.00e-96	345.00
IUUC-Mga-059227	Meleagris gallopavo	59.51	6.00e-98	350.00
IUUC-Mmr-060811	Microcebus murinus	62.46	3.00e-103	367.00
IUUC-Mdo-062582	Monodelphis domestica	60.00	1.00e-101	362.00
IUUC-Mmu-064048	Mus musculus	62.27	2.00e-103	369.00
IUUC-Mpu-066592	Mustela putorius furo	62.46	3.00e-103	367.00
IUUC-Mlu-067466	Myotis lucifugus	60.92	3.00e-99	354.00
IUUC-Nle-069273	Nomascus leucogenys	62.46	3.00e-103	367.00
IUUC-Opr-070473	Ochotona princeps	60.92	1.00e-100	359.00
IUUC-Ont-072515	Oreochromis niloticus	51.23	3.00e-84	304.00
IUUC-Oan-073344	Ornithorhynchus anatinus	57.55	3.00e-78	284.00
IUUC-Ocu-073931	Oryctolagus cuniculus	62.15	7.00e-103	366.00
IUUC-Ola-086605	Oryzias latipes	51.54	2.00e-83	302.00
IUUC-Oga-088115	Otolemur garnettii	62.46	3.00e-103	367.00
IUUC-Oar-089301	Ovis aries	62.15	2.00e-102	365.00
IUUC-Pan-092156	Papio anubis	62.46	3.00e-103	367.00
IUUC-Psi-094031	Pelodiscus sinensis	60.74	1.00e-101	362.00
IUUC-Pma-094724	Petromyzon marinus	47.55	1.00e-76	280.00
IUUC-Pfo-096256	Poecilia formosa	51.53	6.00e-84	304.00
IUUC-Pab-097757	Pongo abelii	62.46	3.00e-103	367.00
IUUC-Pca-100326	Procavia capensis	59.75	3.00e-70	258.00
IUUC-Pva-102523	Pteropus vampyrus	62.46	3.00e-103	367.00
IUUC-Sha-106976	Sarcophilus harrisii	62.04	2.00e-102	365.00
IUUC-Ssl-108521	Sclerotinia sclerotiorum	29.47	8.00e-27	113.00
IUUC-Sar-113159	Sorex araneus	87.30	6.00e-29	120.00
IUUC-Ssc-116399	Sus scrofa	62.46	3.00e-103	367.00
IUUC-Tgu-117029	Taeniopygia guttata	59.13	1.00e-97	349.00
IUUC-Tru-118385	Takifugu rubripes	51.69	5.00e-84	304.00
IUUC-Tsy-118842	Tarsius syrichta	61.54	2.00e-101	362.00
IUUC-Tni-120539	Tetraodon nigroviridis	48.18	6.00e-75	274.00
IUUC-Tae-123436	Triticum aestivum	39.79	8.00e-51	193.00
IUUC-Tbe-128159	Tupaia belangeri	57.23	2.00e-88	318.00
IUUC-Ttr-128743	Tursiops truncatus	62.46	3.00e-103	367.00
IUUC-Vpa-130790	Vicugna pacos	61.18	7.00e-72	263.00
IUUC-Xtr-132887	Xenopus tropicalis	49.38	2.00e-71	262.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence