iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress	GXD
DNA & RNA Element
AREsite	microRNA	TRANSFAC	RepTar
miRNAMap	RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
CPLM	dbPAF	PHOSIDA	mUbiSiDa
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/ZnF/NZF	8.00e-21	74.4	720	745

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/ZnF/NZF

   S: 4    qWaCsaCTflNePeavkCemCsrpRg 29
            W+C++C  +N+PeavkC++C++p++
   Q: 720  TWDCDTCLVQNKPEAVKCVACETPKP 745
           5************************8 PP

Organism

Mus musculus

Protein Sequence
(Fasta)

MASEAGGIGG GGGGGKIRTR RCHQGPVKPY QQGRPQHQGI LSRVTESVKN IVPGWLQRYF 60
NKSENACSCS PDADEVPPWP ENREDEHAIY ADENTNTDDG RITPDPAGSN TEEPSTTSTA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAGAGCGGC GGCGGCGGCG ACGACTGCAG GGACGACGAC GGCGGCGGCG GCGGTGGGGC 60
GGGCGCAGCG CGCACAGGGG GAGGGGTTGG CGGGCGGCGC CAGCGGCCTG GACTGCGGCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR026054--Nucleoporin
IPR013913--Nup153_N
IPR018892--Retro-transposon_transp_CS
IPR001876--Znf_RanBP2

PROSITE

PS01358--ZF_RANBP2_1
PS50199--ZF_RANBP2_2

Pfam

PF08604--Nup153
PF10599--Nup_retrotrp_bd
PF00641--zf-RanBP

SMART

SM00547--ZnF_RBZ

Gene Ontology

GO:0005829--C:cytosol
GO:0042405--C:nuclear inclusion body
GO:0031965--C:nuclear membrane
GO:0034399--C:nuclear periphery
GO:0005643--C:nuclear pore
GO:0044615--C:nuclear pore nuclear basket
GO:0005730--C:nucleolus
GO:0042802--F:identical protein binding
GO:0008139--F:nuclear localization sequence binding
GO:0005487--F:nucleocytoplasmic transporter activity
GO:0043495--F:protein anchor
GO:0017056--F:structural constituent of nuclear pore
GO:0008270--F:zinc ion binding
GO:0046832--P:negative regulation of RNA export from nucleus
GO:0051292--P:nuclear pore complex assembly
GO:0006606--P:protein import into nucleus
GO:0006405--P:RNA export from nucleus

KEGG

mmu:218210

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002264	Ailuropoda melanoleuca	73.69	0.00e+00	1630.00
IUUC-Aca-005186	Anolis carolinensis	50.27	0.00e+00	937.00
IUUC-Ate-010393	Aspergillus terreus	25.89	1.40e-02	34.30
IUUC-Ame-011895	Astyanax mexicanus	52.96	5.00e-90	326.00
IUUC-Bta-013564	Bos taurus	73.02	0.00e+00	972.00
IUUC-Cja-020012	Callithrix jacchus	78.48	0.00e+00	1885.00
IUUC-Cfa-020210	Canis familiaris	76.76	0.00e+00	1663.00
IUUC-Cpo-022504	Cavia porcellus	76.59	0.00e+00	1683.00
IUUC-Csa-023330	Chlorocebus sabaeus	79.21	0.00e+00	1946.00
IUUC-Cho-025048	Choloepus hoffmanni	56.55	0.00e+00	1033.00
IUUC-Cin-025240	Ciona intestinalis	29.48	6.00e-28	120.00
IUUC-Dre-027637	Danio rerio	46.84	6.00e-91	329.00
IUUC-Dno-028993	Dasypus novemcinctus	78.35	0.00e+00	1830.00
IUUC-Dor-030413	Dipodomys ordii	72.51	0.00e+00	918.00
IUUC-Ete-032242	Echinops telfairi	58.10	6.00e-144	505.00
IUUC-Eca-033932	Equus caballus	78.07	0.00e+00	1729.00
IUUC-Eeu-034837	Erinaceus europaeus	75.13	0.00e+00	937.00
IUUC-Fca-036100	Felis catus	75.61	0.00e+00	1688.00
IUUC-Fal-037573	Ficedula albicollis	54.80	0.00e+00	944.00
IUUC-Gmo-038683	Gadus morhua	43.48	6.00e-138	485.00
IUUC-Gga-040987	Gallus gallus	59.40	0.00e+00	1020.00
IUUC-Gac-041456	Gasterosteus aculeatus	49.78	1.00e-81	298.00
IUUC-Ggo-045401	Gorilla gorilla	79.12	0.00e+00	1833.00
IUUC-Hsa-046689	Homo sapiens	78.92	0.00e+00	1874.00
IUUC-Itr-048828	Ictidomys tridecemlineatus	76.68	0.00e+00	1771.00
IUUC-Lch-049785	Latimeria chalumnae	43.93	0.00e+00	661.00
IUUC-Loc-052225	Lepisosteus oculatus	50.42	0.00e+00	723.00
IUUC-Laf-053853	Loxodonta africana	77.57	0.00e+00	1660.00
IUUC-Mcc-054790	Macaca mulatta	78.34	0.00e+00	1965.00
IUUC-Meu-056865	Macropus eugenii	75.61	1.00e-147	518.00
IUUC-Mga-059887	Meleagris gallopavo	58.75	0.00e+00	999.00
IUUC-Mmr-061334	Microcebus murinus	81.07	0.00e+00	1915.00
IUUC-Mdo-062359	Monodelphis domestica	65.84	0.00e+00	1487.00
IUUC-Mpu-066696	Mustela putorius furo	74.80	0.00e+00	1520.00
IUUC-Mlu-067812	Myotis lucifugus	76.72	0.00e+00	1744.00
IUUC-Nle-069960	Nomascus leucogenys	80.94	0.00e+00	1887.00
IUUC-Opr-070987	Ochotona princeps	74.97	0.00e+00	1239.00
IUUC-Ont-072146	Oreochromis niloticus	43.84	9.00e-142	498.00
IUUC-Oan-072713	Ornithorhynchus anatinus	61.40	0.00e+00	1164.00
IUUC-Ocu-074420	Oryctolagus cuniculus	74.76	0.00e+00	1637.00
IUUC-Ola-086355	Oryzias latipes	44.81	6.00e-146	512.00
IUUC-Oga-089122	Otolemur garnettii	77.10	0.00e+00	1891.00
IUUC-Oar-089695	Ovis aries	76.65	0.00e+00	1682.00
IUUC-Ptr-091104	Pan troglodytes	79.45	0.00e+00	1839.00
IUUC-Pan-092205	Papio anubis	83.11	0.00e+00	1178.00
IUUC-Psi-093592	Pelodiscus sinensis	61.25	0.00e+00	1280.00
IUUC-Pma-094617	Petromyzon marinus	34.51	2.00e-82	300.00
IUUC-Pfo-097481	Poecilia formosa	44.88	8.00e-160	558.00
IUUC-Pab-098350	Pongo abelii	77.84	0.00e+00	1754.00
IUUC-Pca-100728	Procavia capensis	67.61	0.00e+00	656.00
IUUC-Pva-102856	Pteropus vampyrus	77.69	0.00e+00	1627.00
IUUC-Rno-105650	Rattus norvegicus	92.64	0.00e+00	2196.00
IUUC-Sha-107464	Sarcophilus harrisii	65.24	0.00e+00	936.00
IUUC-Sar-113578	Sorex araneus	69.74	0.00e+00	1497.00
IUUC-Ssc-115536	Sus scrofa	77.22	0.00e+00	1815.00
IUUC-Tgu-116947	Taeniopygia guttata	55.68	0.00e+00	1025.00
IUUC-Tru-117704	Takifugu rubripes	38.52	4.00e-156	546.00
IUUC-Tsy-119514	Tarsius syrichta	78.04	0.00e+00	1520.00
IUUC-Tni-120354	Tetraodon nigroviridis	47.76	2.00e-98	355.00
IUUC-Tbe-128064	Tupaia belangeri	69.67	1.00e-170	594.00
IUUC-Vpa-130533	Vicugna pacos	80.45	0.00e+00	1857.00
IUUC-Xtr-132016	Xenopus tropicalis	46.07	0.00e+00	881.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence