iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tae-123847

Ensembl Protein ID

TRIAE_CS42_2DS_TGACv1_177462_AA0577840.1

UniProt Accession

A0A1D5UWU0; A0A1D5UWU0_WHEAT

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TRIAE_CS42_2DS_TGACv1_177462_AA0577840	TRIAE_CS42_2DS_TGACv1_177462_AA0577840.1	TRIAE_CS42_2DS_TGACv1_177462_AA0577840.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.10e-34	116.6	272	307

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd.tllvsGsdDgtikvWDlrtgvl 35
           gHt  v+++a+++ +++ s+s+D++++ WD  tg+ 
   Q: 272  GHTQCVSSVAWPEqRTIYSASWDHSVRQWDAQTGRE 307
           8**********88899**************999875 PP

Organism

Triticum aestivum

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDADASRQVR VRFVTKLPPP LRAPPTAIAV PAELSRMGLS EIVNSLLLSA EPDHQAQPFD 60
FIVDGELVRM PLHQFLLAKG ISAERVLELE YIKAVAPRKQ EPPLPHDDWV SAVDGSNPSF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCCGCGAAC TCCAAAAACC CTAACCAAGC AAGCCCACCT TTCAGTCCCA AAACCCTCCC 60
CACACCCTTC CCGCCGCCGC ACGCCCGCCT CCCGTCCGCC GCCGCCGCCA TGGACGCCGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	100.00	0.00e+00	886.00
IUUC-Atr-002544	Amborella trichopoda	61.06	4.00e-156	545.00
IUUC-Acl-008177	Aspergillus clavatus	29.96	7.00e-43	169.00
IUUC-Bci-013953	Botrytis cinerea	28.40	1.00e-37	151.00
IUUC-Bol-016514	Brassica oleracea	64.67	6.00e-161	560.00
IUUC-Bra-016988	Brassica rapa	64.90	9.00e-162	563.00
IUUC-Cin-025789	Ciona intestinalis	31.30	2.00e-51	197.00
IUUC-Cne-027063	Cryptococcus neoformans	26.14	1.00e-24	108.00
IUUC-Dor-031082	Dipodomys ordii	30.86	6.00e-24	105.00
IUUC-Fal-036891	Ficedula albicollis	34.52	3.00e-51	196.00
IUUC-Fso-038244	Fusarium solani	26.25	9.00e-35	142.00
IUUC-Ggr-040093	Gaeumannomyces graminis	23.55	3.00e-25	110.00
IUUC-Gga-040610	Gallus gallus	34.36	1.00e-61	231.00
IUUC-Gma-043756	Glycine max	64.50	1.00e-167	583.00
IUUC-Lma-053258	Leptosphaeria maculans	30.83	9.00e-43	170.00
IUUC-Mpo-057463	Magnaporthe poae	31.07	9.00e-18	84.00
IUUC-Mla-059107	Melampsora laricipopulina	25.70	6.00e-37	149.00
IUUC-Nfi-068260	Neosartorya fischeri	30.08	3.00e-41	163.00
IUUC-Ncr-068719	Neurospora crassa	29.18	2.00e-33	137.00
IUUC-Pma-094189	Petromyzon marinus	35.05	2.00e-60	226.00
IUUC-Pno-094929	Phaeosphaeria nodorum	29.23	3.00e-40	159.00
IUUC-Pop-099977	Populus trichocarpa	65.98	3.00e-171	595.00
IUUC-Ptt-103781	Puccinia triticina	28.09	1.00e-35	145.00
IUUC-Pte-104135	Pyrenophora teres	29.61	4.00e-41	164.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	29.72	8.00e-44	171.00
IUUC-Rno-105114	Rattus norvegicus	32.14	1.00e-54	207.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence