iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	3.60e-12	47.2	284	341

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedek..slveCekCrewfHpaClkls....veeelpnsekwiCpkCrs 53
           ++C+vC + ++d++   +v+C++C++w+H +C ++s    ++ ++ ++ ++ C  Cr 
   Q: 284  NYCPVCLKVYRDSEstPMVCCDICQRWVHCHCDGISddkyMQFQVDGKLQYKCATCRG 341
           79*********9988899******************88766666777777******85 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MAFHVACPIT CRRICHCSLG FSRDLRGANA KHKFLKEVIR VEEFLKDPAV SSNVFIGGTV 60
QVRVPKVVPA PQTVSILGVG DGAIGSGVDE LAEEASAQKK RVALQRQAAV TVEAAEDYAR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTTCTTTGG CTGCATCTTA AAAACATCGT TGATTAAGGT TGAGATGAGA AAAGCACCTT 60
ATCTCTGCGT CCAAACCAAA ACTCACAGAG CTCACCAAAA GAGACGACCC TTTTTCTACT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

SMART

SM00249--PHD

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG

ath:AT3G08020

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001054	Aegilops tauschii	34.19	3.00e-77	282.00
IUUC-Atr-003006	Amborella trichopoda	60.83	3.00e-147	515.00
IUUC-Aca-004705	Anolis carolinensis	32.46	4.00e-25	112.00
IUUC-Aly-006363	Arabidopsis lyrata	97.18	0.00e+00	1492.00
IUUC-Bdi-014882	Brachypodium distachyon	71.60	2.00e-119	422.00
IUUC-Bol-015791	Brassica oleracea	78.62	0.00e+00	1190.00
IUUC-Bra-017422	Brassica rapa	78.57	0.00e+00	1184.00
IUUC-Cin-025528	Ciona intestinalis	31.13	1.00e-11	63.20
IUUC-Dme-031590	Drosophila melanogaster	28.10	2.00e-18	88.20
IUUC-Gma-044032	Glycine max	50.87	0.00e+00	734.00
IUUC-Hvu-047762	Hordeum vulgare	52.21	4.00e-109	387.00
IUUC-Lpe-051476	Leersia perrieri	39.58	9.00e-136	476.00
IUUC-Mtr-058482	Medicago truncatula	50.23	0.00e+00	649.00
IUUC-Mga-059541	Meleagris gallopavo	33.16	2.00e-27	119.00
IUUC-Mvi-060531	Microbotryum violaceum	31.48	3.00e-13	70.90
IUUC-Mdo-062610	Monodelphis domestica	30.89	3.00e-24	107.00
IUUC-Mac-064935	Musa acuminata	47.52	0.00e+00	661.00
IUUC-Oba-075328	Oryza barthii	41.23	4.00e-113	401.00
IUUC-Obr-076458	Oryza brachyantha	44.35	2.00e-140	492.00
IUUC-Ogl-077851	Oryza glaberrima	43.19	1.00e-143	503.00
IUUC-Ogu-078706	Oryza glumaepatula	43.80	1.00e-136	479.00
IUUC-Oin-079802	Oryza indica	63.51	5.00e-109	387.00
IUUC-Olo-080932	Oryza longistaminata	43.37	2.00e-136	479.00
IUUC-Ome-081954	Oryza meridionalis	36.36	1.00e-96	346.00
IUUC-Oni-082043	Oryza nivara	43.80	2.00e-136	479.00
IUUC-Opu-083679	Oryza punctata	43.33	2.00e-137	481.00
IUUC-Oru-084257	Oryza rufipogon	43.17	8.00e-138	483.00
IUUC-Osa-085421	Oryza sativa	43.69	4.00e-136	477.00
IUUC-Ola-086436	Oryzias latipes	32.46	1.00e-25	114.00
IUUC-Pma-094252	Petromyzon marinus	31.41	4.00e-20	94.40
IUUC-Ppa-095221	Physcomitrella patens	48.11	8.00e-120	423.00
IUUC-Pop-099620	Populus trichocarpa	50.70	0.00e+00	744.00
IUUC-Ppe-101920	Prunus persica	53.07	0.00e+00	758.00
IUUC-Pgr-103522	Puccinia graminis	30.30	3.00e-09	57.40
IUUC-Smo-109598	Selaginella moellendorffii	55.21	2.00e-89	322.00
IUUC-Sit-110552	Setaria italica	43.89	2.00e-149	522.00
IUUC-Sly-111109	Solanum lycopersicum	49.19	0.00e+00	707.00
IUUC-Sar-113183	Sorex araneus	28.80	1.00e-17	87.00
IUUC-Sre-115066	Sporisorium reilianum	32.46	1.00e-13	72.40
IUUC-Tca-121624	Theobroma cacao	62.05	0.00e+00	706.00
IUUC-Tae-125629	Triticum aestivum	54.14	7.00e-111	393.00
IUUC-Ttr-128754	Tursiops truncatus	31.71	1.00e-26	116.00
IUUC-Uma-129445	Ustilago maydis	34.91	4.00e-13	70.10
IUUC-Vpa-130660	Vicugna pacos	33.52	1.00e-26	116.00
IUUC-Vvi-131236	Vitis vinifera	55.23	0.00e+00	700.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence