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Tag Content
UUCD2 ID IUUC-Cfa-020533
UUCD1 version UUC-CaF-00246
Ensembl Protein ID ENSCAFP00000019168.2
UniProt Accession E2R9S2; E2R9S2_CANLF
Genbank Protein ID ENSCAFP00000019168
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Genbank Nucleotide ID AAEX03017096
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSCAFG00000013013.3 ENSCAFT00000020652.2 ENSCAFP00000019168.2
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/MIU 6.90e-11 41.9 438 461
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqqfa 24
    r+kQ+++D++LA+qLQ+E++++++
   Q: 438 RHKQEEQDRLLALQLQKEVDKEQM 461
    8********************997 PP
   

Organism Canis familiaris
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MAAARRAVPS LSECQCRICV DILVEPITLP CGHTLCSPCF QATVEKASLC CPFCRRRVSS 60
WTRYHTRRNS LVNAELWAVI QKHYARECKR RASGQEPEDV VDDYQPVRLL SKPGELRREY 120
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Protein Fasta Sequence



>IUUC-Cfa-020533|UBD,MIU|Canis familiaris
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Nucleotide Sequence
(Fasta)
GGGTCGATGG CGGGGGGGCC CGGCTAGCTT CCGGAAATGG CGGCCGCCCG ACGCGCCGTC 60
CCCTCCCTGT CGGAGTGCCA GTGCCGCATC TGCGTGGACA TCCTCGTCGA GCCCATCACG 120
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Nucleotide Fasta Sequence



>IUUC-Cfa-020533|UBD,MIU|Canis familiaris
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Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG cfa:488029
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 85.26 0.00e+00 843.00
IUUC-Apl-003963 Anas platyrhynchos 45.60 7.00e-71 261.00
IUUC-Aca-004420 Anolis carolinensis 70.34 7.00e-49 188.00
IUUC-Ame-011521 Astyanax mexicanus 51.72 8.00e-35 141.00
IUUC-Bta-013002 Bos taurus 75.74 0.00e+00 737.00
IUUC-Cja-019945 Callithrix jacchus 75.13 0.00e+00 692.00
IUUC-Cpo-021643 Cavia porcellus 60.21 6.00e-137 481.00
IUUC-Csa-023638 Chlorocebus sabaeus 75.52 0.00e+00 726.00
IUUC-Cho-024319 Choloepus hoffmanni 74.22 0.00e+00 672.00
IUUC-Cin-025679 Ciona intestinalis 34.15 5.00e-20 91.70
IUUC-Csv-026052 Ciona savignyi 36.61 1.00e-18 86.30
IUUC-Dre-028519 Danio rerio 47.50 8.00e-33 134.00
IUUC-Dno-029294 Dasypus novemcinctus 77.49 0.00e+00 741.00
IUUC-Ete-032714 Echinops telfairi 53.09 3.00e-87 315.00
IUUC-Eca-033343 Equus caballus 79.24 0.00e+00 763.00
IUUC-Eeu-034633 Erinaceus europaeus 36.08 7.00e-27 114.00
IUUC-Fca-036251 Felis catus 85.06 0.00e+00 851.00
IUUC-Fal-037048 Ficedula albicollis 44.80 1.00e-78 287.00
IUUC-Gmo-039400 Gadus morhua 44.35 5.00e-29 119.00
IUUC-Gga-040444 Gallus gallus 40.84 1.00e-72 267.00
IUUC-Gac-041735 Gasterosteus aculeatus 47.97 6.00e-33 134.00
IUUC-Ggo-044940 Gorilla gorilla 72.57 1.00e-142 499.00
IUUC-Hsa-046424 Homo sapiens 76.40 0.00e+00 698.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 75.09 0.00e+00 695.00
IUUC-Lch-050649 Latimeria chalumnae 37.47 2.00e-55 209.00
IUUC-Loc-051847 Lepisosteus oculatus 36.36 1.00e-49 191.00
IUUC-Laf-053938 Loxodonta africana 69.44 0.00e+00 714.00
IUUC-Mcc-055360 Macaca mulatta 75.17 0.00e+00 701.00
IUUC-Meu-056684 Macropus eugenii 50.70 1.00e-116 413.00
IUUC-Mga-059699 Meleagris gallopavo 41.23 2.00e-72 266.00
IUUC-Mmr-060779 Microcebus murinus 77.93 0.00e+00 786.00
IUUC-Mdo-062225 Monodelphis domestica 53.86 1.00e-120 427.00
IUUC-Mmu-064239 Mus musculus 64.32 1.00e-158 553.00
IUUC-Mpu-066141 Mustela putorius furo 85.49 0.00e+00 874.00
IUUC-Mlu-067945 Myotis lucifugus 77.76 0.00e+00 736.00
IUUC-Nle-069769 Nomascus leucogenys 77.45 0.00e+00 716.00
IUUC-Opr-070905 Ochotona princeps 63.11 6.00e-169 587.00
IUUC-Ont-071477 Oreochromis niloticus 51.33 3.00e-32 132.00
IUUC-Oan-073531 Ornithorhynchus anatinus 43.50 8.00e-63 234.00
IUUC-Ocu-073832 Oryctolagus cuniculus 69.76 0.00e+00 636.00
IUUC-Ola-086478 Oryzias latipes 48.78 5.00e-32 129.00
IUUC-Oga-088318 Otolemur garnettii 75.57 0.00e+00 729.00
IUUC-Oar-089647 Ovis aries 74.35 0.00e+00 723.00
IUUC-Ptr-090516 Pan troglodytes 76.40 0.00e+00 716.00
IUUC-Pan-092302 Papio anubis 73.82 0.00e+00 692.00
IUUC-Psi-093604 Pelodiscus sinensis 43.41 2.00e-82 300.00
IUUC-Pfo-096441 Poecilia formosa 47.46 1.00e-31 130.00
IUUC-Pab-097729 Pongo abelii 75.35 0.00e+00 696.00
IUUC-Pca-100552 Procavia capensis 62.18 9.00e-117 414.00
IUUC-Pva-102780 Pteropus vampyrus 79.62 0.00e+00 787.00
IUUC-Rno-105461 Rattus norvegicus 65.03 1.00e-164 572.00
IUUC-Sha-106809 Sarcophilus harrisii 55.98 5.00e-136 478.00
IUUC-Sly-111317 Solanum lycopersicum 36.00 2.00e-13 70.50
IUUC-Stu-112783 Solanum tuberosum 32.71 2.00e-12 67.00
IUUC-Sar-113579 Sorex araneus 62.52 5.00e-159 554.00
IUUC-Tgu-117187 Taeniopygia guttata 62.12 1.00e-46 179.00
IUUC-Tru-118182 Takifugu rubripes 48.76 6.00e-32 131.00
IUUC-Tsy-119217 Tarsius syrichta 59.70 2.00e-68 252.00
IUUC-Tni-120205 Tetraodon nigroviridis 48.06 3.00e-33 135.00
IUUC-Tvi-122557 Trichoderma virens 25.77 1.00e-04 41.60
IUUC-Tbe-127622 Tupaia belangeri 72.85 0.00e+00 709.00
IUUC-Ttr-128988 Tursiops truncatus 83.36 0.00e+00 825.00
IUUC-Vpa-130302 Vicugna pacos 78.49 2.00e-152 532.00
Created Date 25-Jun-2017

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