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Tag Content
UUCD2 ID IUUC-Gma-043146
UUCD1 version UUC-GlM-01398
Ensembl Protein ID GLYMA19G03590.1
UniProt Accession I1N6B4; I1N6B4_SOYBN
Genbank Protein ID KRG93638.1
Protein Name Ribosome biogenesis protein WDR12 homolog
Genbank Nucleotide ID CM000852
Gene Name LOC100789690; GLYMA_19G029400
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
GLYMA19G03590 GLYMA19G03590.1 GLYMA19G03590.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.30e-31 108.1 359 393
UBD/Beta-Prp 1.30e-40 141.1 264 426
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           Ht++++++++  ++  +l+s+s+Dg++++WDlrt 
   Q: 359  HTSWISACKWhdQSwFHLLSASYDGKVMLWDLRTA 393
           **********9744577***************986 PP
   

   UBD/Beta-Prp
   S: 84   gkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl...ktgkllr 173
           g+ + tl gh++ v ++ + + ++++ s+s+d  ir wd+etg+ l +++    +v nc+ + ++g  l+++G+ D ++r+Wd     t   + 
   Q: 264  GEAFTTLVGHTQCVSAVVWPQ-QESIYSASWDHSIRKWDVETGKNLTDLF--CGKVLNCLDIGGEGsALIAAGGSDPVIRIWDPrkpGTSAPVF 354
           78899***********99988.99**********************7555..5578****************************8777788888 PP
   S: 174  tltgghtdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsi 246
           ++++ ht+ +   ++++++ ++l+s+s+dg+v lwdl+t   +   + h+d v+s + + +++ ++sg++D  +
   Q: 355  QFSS-HTSWISACKWHDQSwFHLLSASYDGKVMLWDLRTAWPLSVIESHSDKVLSADWW-KSNSVISGGADSKL 426
           8899.************99****************************************.9*********9876 PP
   
Organism Glycine max
Functional Description
(View)

Functional Description


     Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Protein Sequence
(Fasta)
MNMNEESVEG SARRIQVRFV TKLGEPYKVP TTAIAIPADL ARFGLSSLVN ALLQSNDADH 60
QLEPFDFLID GEFVRMSLEQ FLLAKGISAE RILEIEYTRA VAPRKEEDPS LHDDWVSAVD 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Gma-043146|E3,WD_repeat;UBD,Beta-Prp|Glycine max
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATTCGACAAA ATTTGGGGGT ATTAACGTAA TTTGCTCTAA ATTCTAAAAC CCATGGCAAC 60
TGAACTCGCA GGTTGAGAAC CGTTAAACCC TAGCTTCTTC TTCCTCTTCC TCTTCGCTTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Gma-043146|E3,WD_repeat;UBD,Beta-Prp|Glycine max
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08154--NLE
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000460--P:maturation of 5.8S rRNA
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000470--P:maturation of LSU-rRNA
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
KEGG gmx:100789690
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001997 Ailuropoda melanoleuca 36.63 2.00e-61 229.00
IUUC-Apl-003981 Anas platyrhynchos 36.56 7.00e-60 224.00
IUUC-Aca-004370 Anolis carolinensis 35.41 5.00e-66 244.00
IUUC-Aly-006455 Arabidopsis lyrata 70.11 0.00e+00 647.00
IUUC-Ame-011432 Astyanax mexicanus 36.14 1.00e-69 256.00
IUUC-Bta-012829 Bos taurus 36.69 2.00e-64 239.00
IUUC-Cja-019468 Callithrix jacchus 37.17 1.00e-61 230.00
IUUC-Cfa-020471 Canis familiaris 35.25 2.00e-59 223.00
IUUC-Cpo-022260 Cavia porcellus 36.93 6.00e-63 234.00
IUUC-Csa-023989 Chlorocebus sabaeus 36.93 1.00e-61 230.00
IUUC-Dre-027907 Danio rerio 36.14 3.00e-69 255.00
IUUC-Dno-029225 Dasypus novemcinctus 36.90 8.00e-64 237.00
IUUC-Dor-031082 Dipodomys ordii 32.53 2.00e-28 119.00
IUUC-Ete-032247 Echinops telfairi 34.05 8.00e-56 211.00
IUUC-Eca-034285 Equus caballus 36.21 1.00e-62 233.00
IUUC-Eeu-035322 Erinaceus europaeus 32.84 5.00e-52 198.00
IUUC-Fca-036114 Felis catus 36.21 1.00e-62 233.00
IUUC-Gmo-039040 Gadus morhua 36.71 7.00e-73 267.00
IUUC-Gga-040610 Gallus gallus 35.34 2.00e-63 236.00
IUUC-Gac-042117 Gasterosteus aculeatus 36.45 2.00e-68 252.00
IUUC-Ggo-045179 Gorilla gorilla 36.93 2.00e-62 233.00
IUUC-Hsa-046114 Homo sapiens 36.93 7.00e-62 231.00
IUUC-Itr-048275 Ictidomys tridecemlineatus 36.69 9.00e-64 237.00
IUUC-Lch-050655 Latimeria chalumnae 33.62 3.00e-48 185.00
IUUC-Laf-053993 Loxodonta africana 35.73 5.00e-63 234.00
IUUC-Mga-059745 Meleagris gallopavo 35.64 4.00e-61 228.00
IUUC-Mdo-062257 Monodelphis domestica 35.34 2.00e-65 243.00
IUUC-Mmu-063546 Mus musculus 35.61 4.00e-64 238.00
IUUC-Mpu-066284 Mustela putorius furo 36.21 3.00e-63 236.00
IUUC-Mlu-067241 Myotis lucifugus 37.17 3.00e-64 238.00
IUUC-Nle-068981 Nomascus leucogenys 36.54 2.00e-60 226.00
IUUC-Opr-071218 Ochotona princeps 34.41 3.00e-57 215.00
IUUC-Ont-071646 Oreochromis niloticus 35.89 4.00e-65 241.00
IUUC-Oan-073453 Ornithorhynchus anatinus 36.45 4.00e-73 268.00
IUUC-Ocu-074008 Oryctolagus cuniculus 36.69 3.00e-64 239.00
IUUC-Ola-087420 Oryzias latipes 36.69 4.00e-70 258.00
IUUC-Oga-088264 Otolemur garnettii 35.58 2.00e-60 226.00
IUUC-Oar-089335 Ovis aries 36.45 5.00e-64 238.00
IUUC-Ptr-091320 Pan troglodytes 36.93 7.00e-62 231.00
IUUC-Pan-092833 Papio anubis 37.17 5.00e-62 231.00
IUUC-Psi-093504 Pelodiscus sinensis 34.84 2.00e-61 229.00
IUUC-Pfo-096337 Poecilia formosa 36.45 1.00e-69 256.00
IUUC-Pab-097571 Pongo abelii 36.69 1.00e-61 230.00
IUUC-Pca-100394 Procavia capensis 34.90 3.00e-52 199.00
IUUC-Pva-102921 Pteropus vampyrus 33.48 2.00e-26 113.00
IUUC-Rno-105114 Rattus norvegicus 36.43 8.00e-64 237.00
IUUC-Stu-112169 Solanum tuberosum 70.32 0.00e+00 629.00
IUUC-Sar-113596 Sorex araneus 33.51 1.00e-46 181.00
IUUC-Sre-115002 Sporisorium reilianum 25.26 7.00e-18 85.50
IUUC-Ssc-116066 Sus scrofa 36.21 2.00e-63 236.00
IUUC-Tgu-117048 Taeniopygia guttata 36.02 8.00e-58 217.00
IUUC-Tsy-119573 Tarsius syrichta 26.80 1.00e-21 97.40
IUUC-Tni-119820 Tetraodon nigroviridis 36.78 5.00e-66 244.00
IUUC-Tca-121605 Theobroma cacao 73.79 0.00e+00 678.00
IUUC-Tme-126900 Tuber melanosporum 33.71 2.00e-55 210.00
IUUC-Ttr-129041 Tursiops truncatus 31.65 1.00e-46 181.00
IUUC-Uma-129628 Ustilago maydis 27.94 5.00e-10 59.30
IUUC-Vpa-130260 Vicugna pacos 36.45 6.00e-64 238.00
IUUC-Xtr-132083 Xenopus tropicalis 37.26 3.00e-67 248.00
Created Date 25-Jun-2017

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