iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tae-125861

Ensembl Protein ID

TRIAE_CS42_2BS_TGACv1_146271_AA0460950.1

UniProt Accession

A0A1D5U903; A0A1D5U903_WHEAT

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TRIAE_CS42_2BS_TGACv1_146271_AA0460950	TRIAE_CS42_2BS_TGACv1_146271_AA0460950.1	TRIAE_CS42_2BS_TGACv1_146271_AA0460950.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.40e-34	117.1	272	307

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclafsd.tllvsGsdDgtikvWDlrtgvl 35
           gHt  v+++a+++ +++ s+s+D++i+ WD  tg+ 
   Q: 272  GHTQCVSSVAWPEqRTIYSASWDHSIRQWDAQTGRE 307
           8**********88899**************999875 PP

Organism

Triticum aestivum

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDADTSRQVR VRFITKLPPP LRAPPTAIAV PAELSRMGLS EIVNSLLLSA EPDHQAQPFD 60
FIVDGELVRM PLHQFLLAKG ISAERVLELE YIKAVAPRKQ EPPLPHDDWV SAVDGSNPSF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGAACTCCAA AAACCCTAAC CAAACAAGCC CACCTTTCAG TCCCAAAACC CTCCCCACAC 60
CCTTCCCGCC GCCGCACACC CGCCTCCCGT CCGCCGCCGC CGCCATGGAC GCCGACACGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001997	Ailuropoda melanoleuca	34.41	4.00e-55	209.00
IUUC-Apl-003981	Anas platyrhynchos	34.84	9.00e-58	218.00
IUUC-Aca-004370	Anolis carolinensis	32.86	2.00e-63	236.00
IUUC-Ago-007864	Ashbya gossypii	30.82	2.00e-46	180.00
IUUC-Ame-011432	Astyanax mexicanus	33.49	1.00e-65	244.00
IUUC-Bta-012829	Bos taurus	32.78	1.00e-55	211.00
IUUC-Bdi-014351	Brachypodium distachyon	91.44	0.00e+00	788.00
IUUC-Cel-018569	Caenorhabditis elegans	24.19	8.00e-24	105.00
IUUC-Cja-019468	Callithrix jacchus	33.49	1.00e-53	204.00
IUUC-Cfa-020471	Canis familiaris	32.38	1.00e-53	204.00
IUUC-Cpo-022260	Cavia porcellus	34.44	2.00e-55	210.00
IUUC-Csa-023989	Chlorocebus sabaeus	33.25	9.00e-54	204.00
IUUC-Cho-024426	Choloepus hoffmanni	30.94	9.00e-40	158.00
IUUC-Dre-027907	Danio rerio	33.97	1.00e-65	243.00
IUUC-Dno-029225	Dasypus novemcinctus	33.25	1.00e-55	211.00
IUUC-Dme-032189	Drosophila melanogaster	29.00	1.00e-44	174.00
IUUC-Ete-032247	Echinops telfairi	31.12	1.00e-48	187.00
IUUC-Eca-034285	Equus caballus	33.49	2.00e-55	210.00
IUUC-Eeu-035322	Erinaceus europaeus	29.06	1.00e-44	174.00
IUUC-Fca-036114	Felis catus	33.25	7.00e-55	208.00
IUUC-Gmo-039040	Gadus morhua	33.10	9.00e-66	244.00
IUUC-Gac-042117	Gasterosteus aculeatus	32.08	2.00e-62	233.00
IUUC-Ggo-045179	Gorilla gorilla	33.02	3.00e-53	202.00
IUUC-Hsa-046114	Homo sapiens	33.25	1.00e-53	204.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	33.49	6.00e-56	212.00
IUUC-Lch-050655	Latimeria chalumnae	30.59	1.00e-40	160.00
IUUC-Loc-052868	Lepisosteus oculatus	33.97	3.00e-65	243.00
IUUC-Laf-053993	Loxodonta africana	33.49	6.00e-56	212.00
IUUC-Mcc-055128	Macaca mulatta	25.30	7.00e-31	128.00
IUUC-Meu-056501	Macropus eugenii	33.92	5.00e-48	185.00
IUUC-Mga-059745	Meleagris gallopavo	34.65	9.00e-60	224.00
IUUC-Mdo-062257	Monodelphis domestica	33.73	3.00e-61	229.00
IUUC-Mmu-063546	Mus musculus	31.90	4.00e-55	209.00
IUUC-Mpu-066284	Mustela putorius furo	33.02	4.00e-55	209.00
IUUC-Mlu-067241	Myotis lucifugus	33.73	3.00e-56	213.00
IUUC-Nle-068981	Nomascus leucogenys	33.49	9.00e-53	201.00
IUUC-Opr-071218	Ochotona princeps	32.02	4.00e-51	196.00
IUUC-Ont-071646	Oreochromis niloticus	31.90	8.00e-57	214.00
IUUC-Oan-073453	Ornithorhynchus anatinus	34.12	3.00e-65	243.00
IUUC-Ocu-074008	Oryctolagus cuniculus	33.49	5.00e-56	212.00
IUUC-Ola-087420	Oryzias latipes	32.54	1.00e-64	240.00
IUUC-Olu-087740	Ostreococcus lucimarinus	32.63	1.00e-62	234.00
IUUC-Oga-088264	Otolemur garnettii	32.38	2.00e-53	204.00
IUUC-Oar-089335	Ovis aries	33.02	2.00e-56	213.00
IUUC-Ptr-091320	Pan troglodytes	33.25	1.00e-53	204.00
IUUC-Pan-092833	Papio anubis	33.02	2.00e-53	204.00
IUUC-Psi-093504	Pelodiscus sinensis	32.30	4.00e-56	212.00
IUUC-Pfo-096337	Poecilia formosa	32.78	8.00e-64	238.00
IUUC-Pab-097571	Pongo abelii	33.25	2.00e-53	204.00
IUUC-Pca-100394	Procavia capensis	31.92	8.00e-46	178.00
IUUC-Sce-106401	Saccharomyces cerevisiae	30.72	2.00e-47	184.00
IUUC-Sha-107122	Sarcophilus harrisii	34.04	9.00e-61	228.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	28.73	5.00e-41	162.00
IUUC-Spo-108134	Schizosaccharomyces pombe	28.35	9.00e-39	155.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	28.78	5.00e-42	166.00
IUUC-Sly-111023	Solanum lycopersicum	59.18	5.00e-156	544.00
IUUC-Stu-112778	Solanum tuberosum	64.88	2.00e-164	572.00
IUUC-Sar-113596	Sorex araneus	30.75	2.00e-40	160.00
IUUC-Ssc-116066	Sus scrofa	33.02	2.00e-55	210.00
IUUC-Tgu-117048	Taeniopygia guttata	34.48	6.00e-57	215.00
IUUC-Tni-119820	Tetraodon nigroviridis	34.12	1.00e-60	227.00
IUUC-Tbe-127736	Tupaia belangeri	37.01	6.00e-20	92.40
IUUC-Ttr-129041	Tursiops truncatus	29.05	7.00e-40	158.00
IUUC-Vpa-130260	Vicugna pacos	33.25	9.00e-56	211.00
IUUC-Xtr-132083	Xenopus tropicalis	34.52	2.00e-61	230.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence