iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121185

Ensembl Protein ID

EOX98980

UniProt Accession

A0A061E1Y6; A0A061E1Y6_THECC

Genbank Protein ID

EOX98980.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM001880

Gene Name

TCM_007630

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_007630	EOX98980	EOX98980

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.00e-36	122.1	141	179
UBD/Beta-Prp	1.60e-58	199.2	14	253

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+ +kvWDl+ g+ll+
   Q: 141  GHTRGVNAIRFtPDgRWVVSGGEDNIVKVWDLTAGKLLH 179
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgd 107
           +h+s ++c+k+  +++++l+tg++d+++ +w + +++++ slsgh++++ +v+f++++ + + g+  +tik+wdl+  k+v+tl+gh ++  s++f+p g+
   Q: 14   AHSSSVNCLKIgRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 114
           7999999****99*********************************************999999999********************************** PP
   S: 108  klvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwd 208
           +++sGs d  +++wd++++ c++ t +gh++ vn +++ pdg+ +vsG+ D++v++Wdl  gkll++++  h++++++l+f++  + l++gs d+tvk+wd
   Q: 115  FFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNIVKVWDLTAGKLLHDFKY-HEGQIQCLDFHPHEFLLATGSADRTVKFWD 213
           ***********************.********************************************97.****************************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW 249
           l+t e + +    t+ v+++ f p++  +++g  ++s++++
   Q: 214  LETFELIGSAGPETTGVRCLTFNPDGRTVLCG-LHESLKVF 253
           ***********************888877777.57777774 PP

Organism

Theobroma cacao

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTKRAYKLQ EFVAHSSSVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLSGHTS 60
GIDSVSFDSS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH RSNCISVDFH PFGEFFASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGTGGGGTAT GGTTGCGTAG TCTTTTCGAT TTTGAGTTGC TGATGGAGGG ATCCCCCATT 60
GGGCTGGGCC CGGTTTTATC CCAACAAATT TTTTTTTAAT TTTATTTTAA TTTCCCTCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR008507--DUF789
IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF05623--DUF789
PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	45.00	0.00e+00	716.00
IUUC-Aml-002187	Ailuropoda melanoleuca	50.83	1.00e-98	353.00
IUUC-Atr-002899	Amborella trichopoda	59.79	0.00e+00	977.00
IUUC-Apl-003305	Anas platyrhynchos	52.20	3.00e-101	361.00
IUUC-Aca-004635	Anolis carolinensis	51.19	2.00e-90	326.00
IUUC-Aly-005711	Arabidopsis lyrata	61.07	0.00e+00	985.00
IUUC-Ath-007606	Arabidopsis thaliana	60.85	0.00e+00	984.00
IUUC-Acl-008307	Aspergillus clavatus	30.50	2.00e-27	116.00
IUUC-Bgr-012225	Blumeria graminis	33.16	6.00e-29	121.00
IUUC-Bta-012527	Bos taurus	51.50	2.00e-101	362.00
IUUC-Bdi-014652	Brachypodium distachyon	53.26	0.00e+00	902.00
IUUC-Bol-016374	Brassica oleracea	61.46	0.00e+00	991.00
IUUC-Bra-017068	Brassica rapa	60.32	0.00e+00	966.00
IUUC-Cja-019706	Callithrix jacchus	51.50	4.00e-101	361.00
IUUC-Cfa-020139	Canis familiaris	44.26	1.00e-93	336.00
IUUC-Cpo-021710	Cavia porcellus	51.83	2.00e-102	365.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	43.59	2.00e-82	299.00
IUUC-Csa-023546	Chlorocebus sabaeus	51.89	5.00e-98	350.00
IUUC-Cin-025156	Ciona intestinalis	45.97	9.00e-86	310.00
IUUC-Csv-025962	Ciona savignyi	48.11	8.00e-85	305.00
IUUC-Dre-028215	Danio rerio	51.83	6.00e-101	360.00
IUUC-Dno-029314	Dasypus novemcinctus	51.83	3.00e-101	361.00
IUUC-Dor-030482	Dipodomys ordii	51.50	6.00e-102	363.00
IUUC-Dme-032188	Drosophila melanogaster	37.38	5.00e-57	215.00
IUUC-Eca-034143	Equus caballus	51.16	1.00e-98	353.00
IUUC-Fca-035924	Felis catus	51.83	1.00e-101	363.00
IUUC-Fal-037387	Ficedula albicollis	53.16	2.00e-104	372.00
IUUC-Gmo-038692	Gadus morhua	50.67	4.00e-101	361.00
IUUC-Gga-040597	Gallus gallus	49.23	6.00e-103	367.00
IUUC-Gac-042004	Gasterosteus aculeatus	51.50	6.00e-98	350.00
IUUC-Gma-044134	Glycine max	66.67	0.00e+00	1044.00
IUUC-Ggo-044761	Gorilla gorilla	51.50	4.00e-101	361.00
IUUC-Hsa-045698	Homo sapiens	51.50	2.00e-101	362.00
IUUC-Hvu-047649	Hordeum vulgare	52.82	0.00e+00	892.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	51.50	1.00e-101	363.00
IUUC-Lch-049674	Latimeria chalumnae	52.33	9.00e-105	373.00
IUUC-Lpe-051554	Leersia perrieri	54.05	0.00e+00	932.00
IUUC-Loc-052623	Lepisosteus oculatus	52.16	7.00e-99	353.00
IUUC-Laf-054587	Loxodonta africana	51.50	9.00e-102	363.00
IUUC-Mcc-055851	Macaca mulatta	51.50	4.00e-101	361.00
IUUC-Meu-056704	Macropus eugenii	52.49	2.00e-102	366.00
IUUC-Mpo-057381	Magnaporthe poae	34.38	5.00e-27	115.00
IUUC-Mtr-058053	Medicago truncatula	66.20	0.00e+00	1039.00
IUUC-Mga-059608	Meleagris gallopavo	51.35	2.00e-100	358.00
IUUC-Mmr-061154	Microcebus murinus	51.50	3.00e-101	362.00
IUUC-Mdo-062365	Monodelphis domestica	52.16	1.00e-101	362.00
IUUC-Mmu-063754	Mus musculus	51.50	9.00e-102	363.00
IUUC-Mac-065100	Musa acuminata	57.26	0.00e+00	927.00
IUUC-Mpu-066245	Mustela putorius furo	52.16	5.00e-102	364.00
IUUC-Mlu-067692	Myotis lucifugus	51.68	3.00e-100	358.00
IUUC-Nle-070051	Nomascus leucogenys	51.16	4.00e-100	358.00
IUUC-Opr-070855	Ochotona princeps	51.50	1.00e-101	362.00
IUUC-Ont-071883	Oreochromis niloticus	51.16	1.00e-99	356.00
IUUC-Oan-073293	Ornithorhynchus anatinus	52.16	2.00e-98	352.00
IUUC-Ocu-074644	Oryctolagus cuniculus	51.50	1.00e-101	363.00
IUUC-Oba-075448	Oryza barthii	53.82	0.00e+00	881.00
IUUC-Obr-076385	Oryza brachyantha	53.63	0.00e+00	907.00
IUUC-Ogl-077427	Oryza glaberrima	54.25	0.00e+00	928.00
IUUC-Ogu-078428	Oryza glumaepatula	49.44	0.00e+00	692.00
IUUC-Oin-079811	Oryza indica	53.37	0.00e+00	916.00
IUUC-Olo-080245	Oryza longistaminata	52.12	0.00e+00	882.00
IUUC-Ome-081239	Oryza meridionalis	53.17	0.00e+00	862.00
IUUC-Oni-082640	Oryza nivara	53.82	0.00e+00	881.00
IUUC-Opu-083748	Oryza punctata	54.22	0.00e+00	899.00
IUUC-Oru-084609	Oryza rufipogon	53.82	0.00e+00	881.00
IUUC-Osa-085988	Oryza sativa	49.74	0.00e+00	806.00
IUUC-Ola-087483	Oryzias latipes	46.62	8.00e-92	330.00
IUUC-Oga-087964	Otolemur garnettii	51.50	2.00e-101	362.00
IUUC-Oar-089483	Ovis aries	51.16	1.00e-99	356.00
IUUC-Ptr-091387	Pan troglodytes	51.50	2.00e-101	362.00
IUUC-Pan-092623	Papio anubis	51.50	4.00e-101	361.00
IUUC-Psi-093830	Pelodiscus sinensis	52.16	3.00e-98	351.00
IUUC-Ppa-095379	Physcomitrella patens	83.06	2.00e-158	552.00
IUUC-Pfo-096755	Poecilia formosa	51.16	3.00e-99	355.00
IUUC-Pab-097564	Pongo abelii	51.50	8.00e-101	360.00
IUUC-Pop-099149	Populus trichocarpa	74.00	0.00e+00	1228.00
IUUC-Pca-100357	Procavia capensis	55.83	7.00e-75	274.00
IUUC-Ppe-101237	Prunus persica	72.48	0.00e+00	1202.00
IUUC-Pva-102397	Pteropus vampyrus	47.18	6.00e-89	320.00
IUUC-Rno-105349	Rattus norvegicus	51.50	1.00e-101	363.00
IUUC-Smo-109409	Selaginella moellendorffii	55.45	2.00e-163	568.00
IUUC-Sit-110360	Setaria italica	53.04	0.00e+00	877.00
IUUC-Sly-111307	Solanum lycopersicum	64.87	0.00e+00	1061.00
IUUC-Stu-112053	Solanum tuberosum	60.44	0.00e+00	988.00
IUUC-Sar-112953	Sorex araneus	45.18	2.00e-56	212.00
IUUC-Sbi-114389	Sorghum bicolor	71.02	9.00e-144	503.00
IUUC-Ssc-115949	Sus scrofa	45.06	2.00e-46	179.00
IUUC-Tgu-117461	Taeniopygia guttata	53.16	5.00e-105	374.00
IUUC-Tru-117865	Takifugu rubripes	49.17	7.00e-93	334.00
IUUC-Tsy-119036	Tarsius syrichta	58.54	2.00e-40	159.00
IUUC-Tni-120903	Tetraodon nigroviridis	47.38	1.00e-91	330.00
IUUC-Tae-125263	Triticum aestivum	52.87	0.00e+00	895.00
IUUC-Tur-126411	Triticum urartu	45.34	0.00e+00	704.00
IUUC-Tme-127141	Tuber melanosporum	29.61	3.00e-29	122.00
IUUC-Ttr-128172	Tursiops truncatus	51.50	1.00e-101	363.00
IUUC-Vvi-131489	Vitis vinifera	73.10	0.00e+00	1221.00
IUUC-Xtr-132915	Xenopus tropicalis	51.32	6.00e-98	350.00
IUUC-Xma-134133	Xiphophorus maculatus	50.50	1.00e-96	346.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence