iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bta-013342

Ensembl Protein ID

ENSBTAP00000044615.3

UniProt Accession

E1B860; E1B860_BOVIN

Genbank Protein ID

ENSBTAP00000044615

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

DAAA02057300

Gene Name

IFT140

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSBTAG00000007245.5	ENSBTAT00000047406.3	ENSBTAP00000044615.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.30e-06	26.5	102	133

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           Ht+++  la+ ++ + lvsG + g++ +W+l+
   Q: 102  HTADIAILAWsPNgNCLVSGDRLGVLLLWRLD 133
           9999999****777****************86 PP

Organism

Bos taurus

Protein Sequence
(Fasta)

MALYFDHRIE APDTVGSPSH IGWHPIYPFL AVASVSTTSG GSVDVYLEQG ERVPDMHVER 60
SFRVTCLCWH PTRLILAIGW ESGEVVMFNK QDKEQHAVPA THTADIAILA WSPNGNCLVS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCCTCT ACTTTGACCA CCGCATAGAA GCCCCAGACA CAGTCGGGTC TCCGTCCCAC 60
ATTGGCTGGC ATCCCATCTA CCCATTCTTG GCGGTTGCTT CTGTTAGCAC AACCTCAGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005930--C:axoneme
GO:0005813--C:centrosome
GO:0036064--C:ciliary basal body
GO:0030991--C:intraciliary transport particle A
GO:0032391--C:photoreceptor connecting cilium
GO:0001750--C:photoreceptor outer segment
GO:0060271--P:cilium assembly
GO:0007368--P:determination of left/right symmetry
GO:1990403--P:embryonic brain development
GO:0031076--P:embryonic camera-type eye development
GO:0048701--P:embryonic cranial skeleton morphogenesis
GO:0042733--P:embryonic digit morphogenesis
GO:0007507--P:heart development
GO:0035721--P:intraciliary retrograde transport
GO:0021532--P:neural tube patterning
GO:1905515--P:non-motile cilium assembly
GO:0035845--P:photoreceptor cell outer segment organization
GO:0061512--P:protein localization to cilium
GO:1902017--P:regulation of cilium assembly
GO:0008589--P:regulation of smoothened signaling pathway
GO:0072001--P:renal system development
GO:0060041--P:retina development in camera-type eye

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001534	Ailuropoda melanoleuca	81.63	0.00e+00	2425.00
IUUC-Apl-004045	Anas platyrhynchos	66.71	0.00e+00	1102.00
IUUC-Aca-004856	Anolis carolinensis	70.15	0.00e+00	2107.00
IUUC-Cel-018591	Caenorhabditis elegans	22.50	3.00e-09	58.20
IUUC-Cja-019368	Callithrix jacchus	79.17	0.00e+00	817.00
IUUC-Cre-022796	Chlamydomonas reinhardtii	34.26	0.00e+00	750.00
IUUC-Csa-023417	Chlorocebus sabaeus	80.08	0.00e+00	2331.00
IUUC-Cin-025150	Ciona intestinalis	47.45	0.00e+00	1363.00
IUUC-Csv-025810	Ciona savignyi	33.07	3.00e-87	315.00
IUUC-Dre-027680	Danio rerio	59.42	0.00e+00	1761.00
IUUC-Eca-033444	Equus caballus	84.59	0.00e+00	2580.00
IUUC-Fca-036025	Felis catus	82.82	0.00e+00	2446.00
IUUC-Gmo-038491	Gadus morhua	62.73	0.00e+00	1706.00
IUUC-Gac-041476	Gasterosteus aculeatus	24.29	2.00e-08	55.50
IUUC-Loc-052740	Lepisosteus oculatus	66.09	0.00e+00	1982.00
IUUC-Mga-060030	Meleagris gallopavo	20.73	6.00e-09	57.40
IUUC-Mpu-065874	Mustela putorius furo	82.48	0.00e+00	2447.00
IUUC-Mlu-067077	Myotis lucifugus	81.46	0.00e+00	2460.00
IUUC-Ont-072303	Oreochromis niloticus	58.43	0.00e+00	1699.00
IUUC-Ola-086338	Oryzias latipes	57.52	0.00e+00	1657.00
IUUC-Ptr-090583	Pan troglodytes	79.19	0.00e+00	2345.00
IUUC-Pan-092689	Papio anubis	80.01	0.00e+00	2323.00
IUUC-Psi-093824	Pelodiscus sinensis	72.28	0.00e+00	2226.00
IUUC-Pma-094497	Petromyzon marinus	60.14	0.00e+00	1801.00
IUUC-Pfo-096612	Poecilia formosa	59.13	0.00e+00	1664.00
IUUC-Pva-102236	Pteropus vampyrus	85.06	0.00e+00	1268.00
IUUC-Sha-106814	Sarcophilus harrisii	78.09	0.00e+00	2400.00
IUUC-Tru-118007	Takifugu rubripes	57.45	0.00e+00	1718.00
IUUC-Ttr-128400	Tursiops truncatus	87.39	0.00e+00	1185.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence