iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Sce-106276

UUCD1 version

UUC-SaC-00211

Ensembl Protein ID

YDR030C

UniProt Accession

Q12021; D6VS14; RAD28_YEAST

Genbank Protein ID

CAA87809.1; CAA98852.1; DAA11874.1

Protein Name

Radiation-sensitive protein 28

Genbank Nucleotide ID

Z47814; Z74326; BK006938

Gene Name

RAD28; YDR030C; YD9813.08c

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
YDR030C	YDR030C	YDR030C

Annotation

mRNA Expression
GEO	FFGED
Protein-protein Interaction
iRefIndex	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-20	70.3	194	228

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           H+ ++t l++   +++++ +Gs+D+t+k+WD+ ++
   Q: 194  HKYGITTLKWykaDNGMFFTGSNDKTVKIWDTNRF 228
           8899********655****************7655 PP

Organism

Saccharomyces cerevisiae

Functional Description
(View)

Involved in transcription-coupled repair nucleotide excision repair (NER) of UV-induced DNA lesions.

Protein Sequence
(Fasta)

MDPFLEFRVG NISLNEFYRR TIQSEFERIL EDPLSNMKNY RFSKQSNYST KEKTPLSIGV 60
NCLDIDDTGQ VLLGGGDDGS LSIWGLDESL HRNDEGEQEL INKRLNYIKR QPHQSDDEPA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATCCAT TTTTAGAGTT CAGAGTAGGC AATATCTCAT TAAATGAATT TTATAGAAGA 60
ACTATTCAAA GCGAATTTGA GAGGATCCTT GAAGATCCCC TATCAAATAT GAAAAACTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0006281--P:DNA repair

KEGG

sce:YDR030C

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001170	Aegilops tauschii	31.75	1.00e-07	50.10
IUUC-Aml-002201	Ailuropoda melanoleuca	27.32	8.00e-16	75.90
IUUC-Atr-002784	Amborella trichopoda	30.16	6.00e-15	73.20
IUUC-Apl-003202	Anas platyrhynchos	25.77	1.00e-14	71.60
IUUC-Aca-004708	Anolis carolinensis	25.64	1.00e-13	68.60
IUUC-Ago-007738	Ashbya gossypii	25.69	4.00e-25	107.00
IUUC-Afl-008406	Aspergillus flavus	25.87	1.00e-08	52.40
IUUC-Bta-012825	Bos taurus	26.80	4.00e-15	73.60
IUUC-Bci-013856	Botrytis cinerea	23.70	1.00e-16	79.30
IUUC-Cja-018725	Callithrix jacchus	27.41	3.00e-15	74.30
IUUC-Cfa-021162	Canis familiaris	26.29	5.00e-15	73.20
IUUC-Cpo-022190	Cavia porcellus	25.26	7.00e-15	72.80
IUUC-Cre-022960	Chlamydomonas reinhardtii	31.75	3.00e-13	67.80
IUUC-Csa-023610	Chlorocebus sabaeus	26.80	1.00e-14	72.40
IUUC-Cho-024689	Choloepus hoffmanni	27.32	8.00e-15	72.40
IUUC-Cin-025324	Ciona intestinalis	26.80	1.00e-17	82.40
IUUC-Csv-026059	Ciona savignyi	33.58	2.00e-17	81.30
IUUC-Cgl-026384	Colletotrichum gloeosporioides	23.22	4.00e-13	67.40
IUUC-Dre-028696	Danio rerio	25.25	5.00e-14	70.10
IUUC-Dno-029102	Dasypus novemcinctus	28.35	4.00e-16	77.00
IUUC-Dor-030361	Dipodomys ordii	28.00	4.00e-10	57.00
IUUC-Dse-031167	Dothistroma septosporum	25.13	1.00e-12	65.90
IUUC-Ete-032856	Echinops telfairi	55.56	3.00e-08	50.80
IUUC-Eca-033611	Equus caballus	27.32	2.00e-15	74.30
IUUC-Fca-036481	Felis catus	27.32	1.00e-15	75.50
IUUC-Fal-037327	Ficedula albicollis	27.69	2.00e-17	80.90
IUUC-Fox-037684	Fusarium oxysporum	23.67	2.00e-17	82.00
IUUC-Fso-038306	Fusarium solani	24.56	8.00e-17	79.70
IUUC-Gmo-039043	Gadus morhua	24.62	4.00e-13	67.00
IUUC-Ggr-039783	Gaeumannomyces graminis	24.24	3.00e-14	71.20
IUUC-Gga-041085	Gallus gallus	24.74	3.00e-15	74.30
IUUC-Gac-042328	Gasterosteus aculeatus	30.95	1.00e-13	68.90
IUUC-Gma-042916	Glycine max	28.57	2.00e-14	71.20
IUUC-Ggo-045627	Gorilla gorilla	27.59	7.00e-09	52.80
IUUC-Hsa-046028	Homo sapiens	26.80	1.00e-14	72.40
IUUC-Itr-048648	Ictidomys tridecemlineatus	27.32	1.00e-15	75.90
IUUC-Kpa-049386	Komagataella pastoris	32.86	8.00e-29	119.00
IUUC-Lch-050590	Latimeria chalumnae	30.16	1.00e-12	65.10
IUUC-Lpe-051725	Leersia perrieri	31.75	2.00e-08	51.60
IUUC-Loc-051788	Lepisosteus oculatus	25.13	2.00e-14	71.20
IUUC-Lma-053082	Leptosphaeria maculans	27.69	5.00e-17	80.10
IUUC-Laf-053809	Loxodonta africana	28.35	2.00e-16	78.20
IUUC-Mcc-054998	Macaca mulatta	26.80	4.00e-15	73.20
IUUC-Mor-057003	Magnaporthe oryzae	26.34	2.00e-19	88.60
IUUC-Mdo-062564	Monodelphis domestica	25.77	8.00e-15	72.80
IUUC-Mmu-063904	Mus musculus	26.29	2.00e-15	74.70
IUUC-Mac-064716	Musa acuminata	29.37	2.00e-13	68.60
IUUC-Mpu-066617	Mustela putorius furo	26.80	2.00e-15	74.70
IUUC-Mlu-067054	Myotis lucifugus	25.77	5.00e-14	70.10
IUUC-Nle-069731	Nomascus leucogenys	26.80	1.00e-14	72.40
IUUC-Ont-072558	Oreochromis niloticus	28.57	3.00e-12	64.30
IUUC-Ocu-074415	Oryctolagus cuniculus	26.80	7.00e-15	72.80
IUUC-Oba-075759	Oryza barthii	27.78	8.00e-13	66.20
IUUC-Obr-076387	Oryza brachyantha	27.78	1.00e-13	68.60
IUUC-Ogu-078186	Oryza glumaepatula	27.78	8.00e-13	66.20
IUUC-Oin-079389	Oryza indica	31.75	1.00e-08	51.60
IUUC-Olo-080916	Oryza longistaminata	33.33	1.00e-06	44.30
IUUC-Ome-081471	Oryza meridionalis	27.78	3.00e-12	64.30
IUUC-Oni-082449	Oryza nivara	27.78	6.00e-13	66.60
IUUC-Opu-083210	Oryza punctata	27.78	1.00e-12	65.90
IUUC-Oru-085159	Oryza rufipogon	27.78	9.00e-13	65.90
IUUC-Osa-085926	Oryza sativa	32.05	7.00e-10	55.10
IUUC-Ola-087084	Oryzias latipes	26.13	4.00e-14	70.10
IUUC-Oga-089008	Otolemur garnettii	26.29	4.00e-15	73.60
IUUC-Oar-089259	Ovis aries	26.80	4.00e-15	73.60
IUUC-Ptr-091112	Pan troglodytes	26.80	9.00e-15	72.40
IUUC-Psi-093050	Pelodiscus sinensis	25.64	2.00e-14	71.20
IUUC-Pma-094317	Petromyzon marinus	28.89	3.00e-11	60.80
IUUC-Pno-094798	Phaeosphaeria nodorum	30.26	3.00e-18	84.30
IUUC-Pfo-096855	Poecilia formosa	22.91	1.00e-13	68.90
IUUC-Pab-098096	Pongo abelii	26.29	2.00e-14	70.90
IUUC-Pca-100187	Procavia capensis	32.14	7.00e-11	59.70
IUUC-Pva-102438	Pteropus vampyrus	30.36	4.00e-10	57.00
IUUC-Pte-104197	Pyrenophora teres	24.21	1.00e-14	72.00
IUUC-Pyt-104421	Pyrenophora triticirepentis	23.81	2.00e-14	71.20
IUUC-Rno-106087	Rattus norvegicus	26.80	2.00e-15	74.30
IUUC-Sha-106831	Sarcophilus harrisii	26.40	1.00e-13	68.90
IUUC-Sja-107681	Schizosaccharomyces japonicus	24.87	2.00e-16	77.80
IUUC-Spo-108294	Schizosaccharomyces pombe	25.77	8.00e-16	75.90
IUUC-Ssl-108613	Sclerotinia sclerotiorum	26.32	7.00e-17	79.70
IUUC-Smo-109008	Selaginella moellendorffii	23.19	3.00e-16	77.80
IUUC-Sit-110300	Setaria italica	25.88	2.00e-13	68.20
IUUC-Ssc-115609	Sus scrofa	26.80	2.00e-15	75.10
IUUC-Tgu-116927	Taeniopygia guttata	26.67	2.00e-16	78.20
IUUC-Tru-118164	Takifugu rubripes	23.32	4.00e-14	70.10
IUUC-Tsy-119151	Tarsius syrichta	24.87	3.00e-13	67.80
IUUC-Tni-120896	Tetraodon nigroviridis	29.37	2.00e-13	68.20
IUUC-Tre-122023	Trichoderma reesei	26.26	1.00e-17	82.80
IUUC-Tvi-122507	Trichoderma virens	26.26	5.00e-18	83.60
IUUC-Tur-126092	Triticum urartu	31.75	1.00e-07	48.90
IUUC-Ttr-129097	Tursiops truncatus	26.80	9.00e-15	72.40
IUUC-Vda-130014	Verticillium dahliae	24.65	6.00e-15	73.20
IUUC-Vpa-130782	Vicugna pacos	26.80	3.00e-15	73.90
IUUC-Xtr-132165	Xenopus tropicalis	24.74	5.00e-14	70.10
IUUC-Xma-133205	Xiphophorus maculatus	22.87	3.00e-14	70.50
IUUC-Yli-134614	Yarrowia lipolytica	27.52	4.00e-26	110.00
IUUC-Zma-135861	Zea mays	27.78	2.00e-12	65.10

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence