iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121664

Ensembl Protein ID

EOX92834

UniProt Accession

A0A061DJH9; A0A061DJH9_THECC

Genbank Protein ID

EOX92834.1

Protein Name

Ribosome biogenesis protein BOP1 homolog

Genbank Nucleotide ID

CM001879

Gene Name

TCM_001697

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_001697	EOX92834	EOX92834
TCM_001697	EOX92835	EOX92835

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.70e-14	52.6	353	391

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH++ v +++  ++   ++sGs Dgt+++W++ tg++l+
   Q: 353  GHEGAVLSISVePSgQWIASGSKDGTVRIWEVETGRCLR 391
           8***********66699********************97 PP

Organism

Theobroma cacao

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MRRTSPRSTT PSLKTMNHQE SQRPEKVNPL EMRDLGFIES GNNDGLDDNH DQDELADSSQ 60
SRQAVDESDS SEDEVAPRNT IGDVPLEWYK DEKHIGYDIA GKKIKKKERQ DKLDSFLASA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGCCACGCTC GGCTCCTTCT TCTTTCTTTT CTCCCTAGCC GCCCAGCCAC AGCCACGCCC 60
TGCTGGCTGC CACGGTGTCG CCACAGGCCC CACGCCCTTG TTCTTCCCCA GCTGCCAGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	63.93	0.00e+00	743.00
IUUC-Aml-001507	Ailuropoda melanoleuca	44.28	4.00e-143	501.00
IUUC-Atr-003141	Amborella trichopoda	67.93	2.00e-169	588.00
IUUC-Apl-003545	Anas platyrhynchos	42.06	1.00e-121	429.00
IUUC-Aly-005649	Arabidopsis lyrata	75.29	0.00e+00	983.00
IUUC-Ath-007625	Arabidopsis thaliana	71.43	0.00e+00	949.00
IUUC-Ago-007958	Ashbya gossypii	39.76	6.00e-140	490.00
IUUC-Acl-008344	Aspergillus clavatus	42.64	4.00e-127	448.00
IUUC-Afl-008616	Aspergillus flavus	41.34	2.00e-128	452.00
IUUC-Afu-009083	Aspergillus fumigatus	42.40	5.00e-123	434.00
IUUC-Ani-009365	Aspergillus nidulans	40.98	5.00e-130	457.00
IUUC-Ang-009796	Aspergillus niger	40.47	7.00e-124	437.00
IUUC-Aor-010015	Aspergillus oryzae	41.34	2.00e-128	452.00
IUUC-Ate-010537	Aspergillus terreus	41.79	9.00e-133	466.00
IUUC-Ame-011767	Astyanax mexicanus	54.84	4.00e-67	246.00
IUUC-Bgr-012286	Blumeria graminis	42.44	5.00e-139	487.00
IUUC-Bta-013569	Bos taurus	47.49	2.00e-158	551.00
IUUC-Bci-013820	Botrytis cinerea	41.95	2.00e-130	459.00
IUUC-Bdi-014477	Brachypodium distachyon	68.57	0.00e+00	878.00
IUUC-Bol-016099	Brassica oleracea	76.26	0.00e+00	1001.00
IUUC-Bra-017174	Brassica rapa	76.30	0.00e+00	1013.00
IUUC-Cel-018201	Caenorhabditis elegans	39.71	8.00e-123	433.00
IUUC-Cja-019009	Callithrix jacchus	41.37	8.00e-131	460.00
IUUC-Cfa-020173	Canis familiaris	42.79	3.00e-144	504.00
IUUC-Cpo-021796	Cavia porcellus	46.19	6.00e-155	540.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	50.63	3.00e-173	600.00
IUUC-Csa-023440	Chlorocebus sabaeus	45.73	3.00e-158	551.00
IUUC-Cin-025782	Ciona intestinalis	43.69	3.00e-149	521.00
IUUC-Csv-026352	Ciona savignyi	43.65	3.00e-146	511.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	38.10	3.00e-106	378.00
IUUC-Cne-027004	Cryptococcus neoformans	42.33	1.00e-150	526.00
IUUC-Cme-027242	Cyanidioschyzon merolae	33.73	9.00e-108	383.00
IUUC-Dre-028658	Danio rerio	47.13	3.00e-159	555.00
IUUC-Dno-028883	Dasypus novemcinctus	47.02	9.00e-159	553.00
IUUC-Dor-031031	Dipodomys ordii	44.60	5.00e-160	556.00
IUUC-Dse-031443	Dothistroma septosporum	40.18	7.00e-125	440.00
IUUC-Dme-031786	Drosophila melanogaster	43.08	7.00e-157	546.00
IUUC-Eca-033677	Equus caballus	46.86	7.00e-157	546.00
IUUC-Eeu-035310	Erinaceus europaeus	44.44	3.00e-119	421.00
IUUC-Fca-035888	Felis catus	45.41	7.00e-154	536.00
IUUC-Fal-037438	Ficedula albicollis	45.08	4.00e-126	444.00
IUUC-Fox-037973	Fusarium oxysporum	40.90	2.00e-138	485.00
IUUC-Fso-038187	Fusarium solani	40.22	4.00e-136	478.00
IUUC-Gmo-039114	Gadus morhua	43.16	5.00e-140	490.00
IUUC-Ggr-039746	Gaeumannomyces graminis	39.88	6.00e-140	490.00
IUUC-Gga-040631	Gallus gallus	47.79	2.00e-88	318.00
IUUC-Gac-042582	Gasterosteus aculeatus	44.98	2.00e-146	511.00
IUUC-Gma-044215	Glycine max	77.13	0.00e+00	1011.00
IUUC-Ggo-045587	Gorilla gorilla	45.57	7.00e-158	550.00
IUUC-Hsa-046319	Homo sapiens	45.57	6.00e-158	550.00
IUUC-Hvu-047526	Hordeum vulgare	68.62	0.00e+00	849.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	46.42	3.00e-156	544.00
IUUC-Kpa-049221	Komagataella pastoris	38.73	1.00e-130	459.00
IUUC-Lch-049640	Latimeria chalumnae	46.91	5.00e-163	567.00
IUUC-Lpe-051135	Leersia perrieri	65.03	0.00e+00	798.00
IUUC-Loc-051930	Lepisosteus oculatus	47.49	2.00e-167	581.00
IUUC-Lma-053290	Leptosphaeria maculans	41.22	4.00e-132	464.00
IUUC-Laf-053903	Loxodonta africana	43.98	2.00e-137	482.00
IUUC-Mcc-055471	Macaca mulatta	45.57	3.00e-158	551.00
IUUC-Meu-056190	Macropus eugenii	46.19	5.00e-156	543.00
IUUC-Mor-057135	Magnaporthe oryzae	41.14	7.00e-132	463.00
IUUC-Mpo-057475	Magnaporthe poae	40.28	2.00e-131	462.00
IUUC-Mtr-058689	Medicago truncatula	71.43	0.00e+00	937.00
IUUC-Mla-059149	Melampsora laricipopulina	44.65	2.00e-145	508.00
IUUC-Mga-059645	Meleagris gallopavo	41.06	8.00e-49	186.00
IUUC-Mvi-060485	Microbotryum violaceum	43.25	3.00e-129	456.00
IUUC-Mmr-061674	Microcebus murinus	45.95	8.00e-150	523.00
IUUC-Mdo-062973	Monodelphis domestica	45.57	7.00e-161	560.00
IUUC-Mmu-064180	Mus musculus	45.87	1.00e-156	546.00
IUUC-Mac-064535	Musa acuminata	71.40	0.00e+00	684.00
IUUC-Mpu-066406	Mustela putorius furo	46.22	4.00e-159	554.00
IUUC-Mlu-067795	Myotis lucifugus	46.52	2.00e-149	521.00
IUUC-Nfi-068516	Neosartorya fischeri	41.62	2.00e-115	409.00
IUUC-Ncr-068767	Neurospora crassa	41.55	9.00e-126	443.00
IUUC-Opr-071084	Ochotona princeps	44.80	3.00e-58	218.00
IUUC-Ont-071614	Oreochromis niloticus	45.38	3.00e-158	551.00
IUUC-Oba-075980	Oryza barthii	65.20	0.00e+00	798.00
IUUC-Obr-076799	Oryza brachyantha	68.09	0.00e+00	866.00
IUUC-Ogl-077134	Oryza glaberrima	68.58	0.00e+00	851.00
IUUC-Ogu-078655	Oryza glumaepatula	66.12	0.00e+00	830.00
IUUC-Oin-079654	Oryza indica	68.58	0.00e+00	850.00
IUUC-Olo-080706	Oryza longistaminata	65.36	0.00e+00	801.00
IUUC-Ome-081716	Oryza meridionalis	55.39	0.00e+00	642.00
IUUC-Oni-082508	Oryza nivara	64.81	0.00e+00	801.00
IUUC-Opu-083707	Oryza punctata	65.20	0.00e+00	797.00
IUUC-Oru-084453	Oryza rufipogon	65.36	0.00e+00	801.00
IUUC-Osa-085811	Oryza sativa	68.41	0.00e+00	850.00
IUUC-Ola-087361	Oryzias latipes	46.02	2.00e-160	558.00
IUUC-Oga-088015	Otolemur garnettii	45.56	3.00e-155	541.00
IUUC-Oar-090058	Ovis aries	53.89	2.00e-48	186.00
IUUC-Ptr-090631	Pan troglodytes	41.80	1.00e-60	225.00
IUUC-Pan-092306	Papio anubis	45.66	7.00e-157	546.00
IUUC-Pma-094622	Petromyzon marinus	45.40	1.00e-156	545.00
IUUC-Pno-094794	Phaeosphaeria nodorum	38.95	1.00e-118	419.00
IUUC-Ppa-095528	Physcomitrella patens	59.24	5.00e-150	523.00
IUUC-Pfo-096682	Poecilia formosa	47.08	2.00e-160	558.00
IUUC-Pab-097939	Pongo abelii	44.80	9.00e-140	489.00
IUUC-Pop-099043	Populus trichocarpa	84.34	0.00e+00	980.00
IUUC-Pca-100333	Procavia capensis	45.87	2.00e-157	548.00
IUUC-Ppe-102078	Prunus persica	75.30	0.00e+00	951.00
IUUC-Pgr-103525	Puccinia graminis	43.17	9.00e-133	467.00
IUUC-Ptt-103929	Puccinia triticina	43.27	3.00e-128	451.00
IUUC-Pte-104029	Pyrenophora teres	41.76	3.00e-140	491.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	41.76	1.00e-139	489.00
IUUC-Rno-105248	Rattus norvegicus	46.19	2.00e-157	548.00
IUUC-Sce-106381	Saccharomyces cerevisiae	40.15	3.00e-138	485.00
IUUC-Sha-106519	Sarcophilus harrisii	45.85	6.00e-162	563.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	40.51	2.00e-130	459.00
IUUC-Spo-108071	Schizosaccharomyces pombe	42.47	5.00e-132	464.00
IUUC-Smo-109604	Selaginella moellendorffii	60.25	0.00e+00	748.00
IUUC-Sit-110551	Setaria italica	69.28	0.00e+00	873.00
IUUC-Sly-110970	Solanum lycopersicum	73.63	8.00e-169	585.00
IUUC-Stu-112593	Solanum tuberosum	78.29	0.00e+00	1030.00
IUUC-Sar-113123	Sorex araneus	41.25	5.00e-65	240.00
IUUC-Sbi-113945	Sorghum bicolor	69.38	0.00e+00	888.00
IUUC-Sre-115188	Sporisorium reilianum	42.67	5.00e-80	291.00
IUUC-Ssc-115352	Sus scrofa	45.87	2.00e-158	551.00
IUUC-Tru-117685	Takifugu rubripes	46.33	2.00e-161	562.00
IUUC-Tni-119982	Tetraodon nigroviridis	47.01	8.00e-154	536.00
IUUC-Tre-122229	Trichoderma reesei	40.21	5.00e-122	431.00
IUUC-Tvi-122576	Trichoderma virens	40.74	4.00e-126	444.00
IUUC-Tae-124110	Triticum aestivum	69.22	0.00e+00	819.00
IUUC-Tur-126781	Triticum urartu	63.93	0.00e+00	726.00
IUUC-Tme-127080	Tuber melanosporum	45.64	6.00e-157	546.00
IUUC-Ttr-128514	Tursiops truncatus	41.17	5.00e-129	454.00
IUUC-Uma-129556	Ustilago maydis	42.06	2.00e-77	283.00
IUUC-Vda-129715	Verticillium dahliae	41.45	2.00e-132	466.00
IUUC-Vvi-131211	Vitis vinifera	78.77	0.00e+00	1057.00
IUUC-Xma-133883	Xiphophorus maculatus	45.48	8.00e-153	533.00
IUUC-Yli-134438	Yarrowia lipolytica	40.87	3.00e-129	455.00
IUUC-Zma-135341	Zea mays	62.24	0.00e+00	841.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence