iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Bdi-014652

UUCD1 version

UUC-BrD-01241

Ensembl Protein ID

BRADI5G26190.1

UniProt Accession

I1J3D1; I1J3D1_BRADI

Genbank Protein ID

KQJ85291.1; KQJ85297.1; KQJ85299.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM000884; CM000884; CM000884

Gene Name

BRADI_5g26190

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
BRADI5G26190	BRADI5G26190.1	BRADI5G26190.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.20e-37	124.0	143	181
UBD/Beta-Prp	1.40e-57	195.7	16	278

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D ++k+WDl+ g+ll+
   Q: 143  GHTRGVNAIRFtPDgRWVVSGGEDSVVKIWDLTAGKLLH 181
           8***********99999******************9987 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsls 101
           +h+s ++c+k+  + +++l+tg++d+++ +w + +++ ++sl gh+++v +v f++++ + + g+  +t+k+wdl+  k+v+tl+gh ++ +s++
   Q: 16   AHSSNVNCLKIgRKTSRVLVTGGEDHKVNLWAIGKPNSISSLPGHTSAVESVAFDSTEVFVAAGAASGTVKLWDLEEAKIVRTLTGHRSNCMSVD 110
           7999999****999********************************************9999********************************* PP
   S: 102  fspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelv 196
           f+p g++++sGs d  +++wd++ + c++ t +gh++ vn +++ pdg+ +vsG+ D++v++Wdl  gkll+++++ h++++++++f++  + l+
   Q: 111  FHPFGEFFASGSLDTNLKIWDIRRKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDSVVKIWDLTAGKLLHEFKS-HDGQIQCIDFHPHEFLLA 203
           *****************************.*********************************************9.****************** PP
   S: 197  sgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvav 272
           +gs d+tvk+wdl+t e + +     + v+s+ f p++  l++g  ++s++++  +   +  t+    s+++   v
   Q: 204  TGSADKTVKFWDLETFELIGSTGPEMTGVRSMTFNPDGRSLLCG-LHESLKVFSWEPIRCHDTVDVGWSRLSDLNV 278
           ***********************************999999999.5888888666666666666665555555555 PP

Organism

Brachypodium distachyon

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTNTKRAYK LQEFVAHSSN VNCLKIGRKT SRVLVTGGED HKVNLWAIGK PNSISSLPGH 60
TSAVESVAFD STEVFVAAGA ASGTVKLWDL EEAKIVRTLT GHRSNCMSVD FHPFGEFFAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACGACCA ACACCAAGCG CGCTTACAAG CTCCGTATCC TCGAGATTTC GTTTCGATTT 60
TTTTTTCGTT GTTGTTGCGA CAATTGGATT TTGAATTGTT TTTGTTGTTG TTGGGGTGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

bdi:100840374

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	75.36	0.00e+00	1407.00
IUUC-Aml-002187	Ailuropoda melanoleuca	52.84	8.00e-101	360.00
IUUC-Apl-003305	Anas platyrhynchos	51.53	1.00e-100	360.00
IUUC-Aca-004635	Anolis carolinensis	51.26	2.00e-91	329.00
IUUC-Aly-005711	Arabidopsis lyrata	64.48	0.00e+00	633.00
IUUC-Ath-007323	Arabidopsis thaliana	47.70	0.00e+00	741.00
IUUC-Acl-008307	Aspergillus clavatus	31.27	8.00e-29	120.00
IUUC-Bta-012527	Bos taurus	53.51	7.00e-104	370.00
IUUC-Bol-016374	Brassica oleracea	59.92	6.00e-178	617.00
IUUC-Bra-017390	Brassica rapa	77.15	3.00e-177	614.00
IUUC-Cja-019706	Callithrix jacchus	53.51	2.00e-103	369.00
IUUC-Cfa-020139	Canis familiaris	45.63	1.00e-96	346.00
IUUC-Cpo-021710	Cavia porcellus	53.18	8.00e-104	370.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	44.16	4.00e-82	298.00
IUUC-Csa-023546	Chlorocebus sabaeus	53.29	5.00e-100	357.00
IUUC-Cin-025156	Ciona intestinalis	46.18	7.00e-87	314.00
IUUC-Csv-025962	Ciona savignyi	48.99	1.00e-87	315.00
IUUC-Dre-028215	Danio rerio	52.96	5.00e-103	367.00
IUUC-Dno-029314	Dasypus novemcinctus	53.85	1.00e-103	369.00
IUUC-Dor-030482	Dipodomys ordii	53.51	3.00e-104	372.00
IUUC-Dme-032188	Drosophila melanogaster	38.06	1.00e-57	217.00
IUUC-Eca-034143	Equus caballus	53.18	6.00e-101	360.00
IUUC-Fca-035924	Felis catus	53.85	3.00e-104	371.00
IUUC-Fal-037387	Ficedula albicollis	52.15	2.00e-103	369.00
IUUC-Gmo-038692	Gadus morhua	52.33	7.00e-103	367.00
IUUC-Gga-040597	Gallus gallus	52.51	5.00e-103	367.00
IUUC-Gac-042004	Gasterosteus aculeatus	51.97	1.00e-98	353.00
IUUC-Ggo-044761	Gorilla gorilla	53.51	1.00e-103	369.00
IUUC-Hsa-045698	Homo sapiens	50.61	6.00e-104	370.00
IUUC-Hvu-047649	Hordeum vulgare	86.90	0.00e+00	1639.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	53.51	5.00e-104	371.00
IUUC-Lch-049674	Latimeria chalumnae	53.00	8.00e-106	377.00
IUUC-Lpe-051554	Leersia perrieri	80.09	0.00e+00	1511.00
IUUC-Loc-052623	Lepisosteus oculatus	53.33	3.00e-100	358.00
IUUC-Laf-054587	Loxodonta africana	53.51	4.00e-104	371.00
IUUC-Mcc-055851	Macaca mulatta	53.51	1.00e-103	369.00
IUUC-Meu-056704	Macropus eugenii	53.85	5.00e-104	371.00
IUUC-Mpo-057381	Magnaporthe poae	33.33	1.00e-26	114.00
IUUC-Mtr-058053	Medicago truncatula	73.03	0.00e+00	668.00
IUUC-Mga-059608	Meleagris gallopavo	50.68	8.00e-100	357.00
IUUC-Mmr-061154	Microcebus murinus	53.51	1.00e-103	370.00
IUUC-Mdo-062365	Monodelphis domestica	53.85	2.00e-103	369.00
IUUC-Mmu-063754	Mus musculus	53.07	2.00e-104	372.00
IUUC-Mac-064439	Musa acuminata	68.82	0.00e+00	668.00
IUUC-Mpu-066245	Mustela putorius furo	54.18	3.00e-104	372.00
IUUC-Mlu-067692	Myotis lucifugus	52.92	3.00e-103	368.00
IUUC-Nle-070051	Nomascus leucogenys	53.18	1.00e-102	366.00
IUUC-Opr-070855	Ochotona princeps	53.51	2.00e-104	372.00
IUUC-Ont-071883	Oreochromis niloticus	50.83	2.00e-98	352.00
IUUC-Oan-073293	Ornithorhynchus anatinus	54.09	6.00e-101	360.00
IUUC-Ocu-074644	Oryctolagus cuniculus	53.51	4.00e-104	371.00
IUUC-Oba-075448	Oryza barthii	64.28	0.00e+00	1073.00
IUUC-Obr-076385	Oryza brachyantha	77.05	0.00e+00	1438.00
IUUC-Ogl-077427	Oryza glaberrima	81.83	0.00e+00	1509.00
IUUC-Ogu-078428	Oryza glumaepatula	57.34	0.00e+00	889.00
IUUC-Oin-079811	Oryza indica	80.69	0.00e+00	1499.00
IUUC-Olo-080245	Oryza longistaminata	77.65	0.00e+00	1417.00
IUUC-Ome-081239	Oryza meridionalis	78.39	0.00e+00	1390.00
IUUC-Oni-082640	Oryza nivara	64.28	0.00e+00	1073.00
IUUC-Opu-083748	Oryza punctata	73.78	0.00e+00	1343.00
IUUC-Oru-084609	Oryza rufipogon	64.28	0.00e+00	1073.00
IUUC-Osa-085988	Oryza sativa	77.02	0.00e+00	1389.00
IUUC-Ola-087483	Oryzias latipes	49.33	3.00e-94	338.00
IUUC-Oga-087964	Otolemur garnettii	53.51	7.00e-104	370.00
IUUC-Oar-089483	Ovis aries	53.18	7.00e-102	363.00
IUUC-Ptr-091387	Pan troglodytes	50.61	5.00e-104	370.00
IUUC-Pan-092623	Papio anubis	53.51	1.00e-103	369.00
IUUC-Psi-093830	Pelodiscus sinensis	53.02	8.00e-99	353.00
IUUC-Ppa-095379	Physcomitrella patens	81.33	1.00e-154	540.00
IUUC-Pfo-096755	Poecilia formosa	48.51	8.00e-100	357.00
IUUC-Pab-097564	Pongo abelii	53.51	4.00e-103	367.00
IUUC-Pop-099149	Populus trichocarpa	71.98	0.00e+00	679.00
IUUC-Pca-100357	Procavia capensis	57.35	2.00e-76	279.00
IUUC-Pva-102397	Pteropus vampyrus	49.16	5.00e-91	328.00
IUUC-Rno-105349	Rattus norvegicus	53.07	1.00e-104	373.00
IUUC-Sit-110360	Setaria italica	81.34	0.00e+00	1502.00
IUUC-Sly-111307	Solanum lycopersicum	68.07	0.00e+00	663.00
IUUC-Stu-112462	Solanum tuberosum	69.27	0.00e+00	636.00
IUUC-Sar-112953	Sorex araneus	46.05	1.00e-58	220.00
IUUC-Ssc-115949	Sus scrofa	47.53	1.00e-48	186.00
IUUC-Tgu-117461	Taeniopygia guttata	52.15	5.00e-104	371.00
IUUC-Tru-117865	Takifugu rubripes	49.33	3.00e-92	332.00
IUUC-Tsy-119036	Tarsius syrichta	59.50	4.00e-40	158.00
IUUC-Tni-120903	Tetraodon nigroviridis	47.85	2.00e-93	335.00
IUUC-Tca-121185	Theobroma cacao	52.99	0.00e+00	911.00
IUUC-Tae-125307	Triticum aestivum	88.42	0.00e+00	1661.00
IUUC-Tur-126411	Triticum urartu	76.20	0.00e+00	1387.00
IUUC-Ttr-128172	Tursiops truncatus	53.51	4.00e-104	371.00
IUUC-Vvi-131489	Vitis vinifera	51.78	0.00e+00	844.00
IUUC-Xtr-132915	Xenopus tropicalis	52.98	2.00e-100	359.00
IUUC-Xma-134133	Xiphophorus maculatus	47.62	1.00e-96	347.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence