iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Kpa-049284

Ensembl Protein ID

CAY71971

UniProt Accession

C4R8P6; C4R8P6_KOMPG

Genbank Protein ID

CAY71971.1

Protein Name

Component of the nuclear pore complex

Genbank Nucleotide ID

FN392322

Gene Name

PAS_chr4_0710

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PAS_chr4_0710	CAY71971	CAY71971

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.40e-26	87.5	73	106

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           H+++v ++++ +d t +++G+ D +++++D+ tg
   Q: 73   HESPVLAVHWsPDgTKVATGAADRQVRLYDVQTG 106
           ***********999*****************998 PP

Organism

Komagataella pastoris

Protein Sequence
(Fasta)

MSFLSSSNVN VTQGTVQDLQ NDVVVGNGPE DSISDLAFSP QAELLAVASW DKKVRVYEVL 60
PTGTTEGRAL YDHESPVLAV HWSPDGTKVA TGAADRQVRL YDVQTGQVQN LGMHEAPVKA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCATTTC TTAGTTCCAG CAACGTCAAC GTAACGCAGG GAACAGTCCA GGACCTTCAA 60
AATGACGTGG TGGTAGGAAA TGGACCAGAA GATTCCATCA GTGATTTGGC CTTCTCACCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0016020--C:membrane
GO:0005643--C:nuclear pore
GO:0031081--P:nuclear pore distribution
GO:0016973--P:poly(A)+ mRNA export from nucleus
GO:0000973--P:posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:2000728--P:regulation of mRNA export from nucleus in response to heat stress

KEGG

ppa:PAS_chr4_0710

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000293	Aegilops tauschii	42.86	5.00e-75	272.00
IUUC-Aml-002179	Ailuropoda melanoleuca	43.57	8.00e-75	271.00
IUUC-Atr-002609	Amborella trichopoda	42.94	5.00e-79	285.00
IUUC-Apl-003637	Anas platyrhynchos	43.27	6.00e-74	268.00
IUUC-Aca-005042	Anolis carolinensis	44.15	9.00e-75	271.00
IUUC-Aly-006015	Arabidopsis lyrata	42.55	7.00e-79	285.00
IUUC-Ath-007659	Arabidopsis thaliana	42.86	2.00e-79	286.00
IUUC-Ago-008004	Ashbya gossypii	58.31	5.00e-125	438.00
IUUC-Acl-008030	Aspergillus clavatus	53.55	1.00e-109	387.00
IUUC-Afl-008636	Aspergillus flavus	54.14	6.00e-111	391.00
IUUC-Afu-009121	Aspergillus fumigatus	53.85	2.00e-109	386.00
IUUC-Ani-009238	Aspergillus nidulans	52.96	8.00e-110	387.00
IUUC-Ang-009801	Aspergillus niger	53.69	2.00e-112	396.00
IUUC-Aor-009974	Aspergillus oryzae	54.14	6.00e-111	391.00
IUUC-Ate-010406	Aspergillus terreus	51.78	1.00e-106	377.00
IUUC-Ame-011368	Astyanax mexicanus	43.31	9.00e-74	268.00
IUUC-Bgr-012233	Blumeria graminis	50.88	4.00e-103	365.00
IUUC-Bta-012856	Bos taurus	43.57	8.00e-75	271.00
IUUC-Bci-013964	Botrytis cinerea	51.33	2.00e-106	377.00
IUUC-Bdi-015050	Brachypodium distachyon	45.10	3.00e-78	283.00
IUUC-Bol-015367	Brassica oleracea	42.86	1.00e-78	283.00
IUUC-Bra-017292	Brassica rapa	42.86	1.00e-78	284.00
IUUC-Cel-018563	Caenorhabditis elegans	36.92	2.00e-60	223.00
IUUC-Cja-019700	Callithrix jacchus	43.57	6.00e-75	271.00
IUUC-Cfa-020337	Canis familiaris	43.57	6.00e-75	272.00
IUUC-Cpo-021858	Cavia porcellus	43.57	5.00e-75	272.00
IUUC-Cre-022748	Chlamydomonas reinhardtii	44.18	8.00e-79	285.00
IUUC-Csa-023322	Chlorocebus sabaeus	43.57	7.00e-75	271.00
IUUC-Cho-024930	Choloepus hoffmanni	38.11	2.00e-53	200.00
IUUC-Cin-025393	Ciona intestinalis	38.30	2.00e-68	250.00
IUUC-Csv-026093	Ciona savignyi	37.43	5.00e-68	248.00
IUUC-Cgl-026503	Colletotrichum gloeosporioides	44.13	3.00e-78	282.00
IUUC-Cne-026774	Cryptococcus neoformans	47.13	4.00e-83	299.00
IUUC-Cme-027243	Cyanidioschyzon merolae	37.05	2.00e-67	247.00
IUUC-Dre-028159	Danio rerio	43.90	1.00e-74	271.00
IUUC-Dno-028852	Dasypus novemcinctus	43.57	6.00e-75	272.00
IUUC-Dor-030318	Dipodomys ordii	38.76	5.00e-55	205.00
IUUC-Dse-031161	Dothistroma septosporum	48.99	2.00e-93	333.00
IUUC-Dme-032009	Drosophila melanogaster	43.28	3.00e-73	266.00
IUUC-Ete-032903	Echinops telfairi	30.60	1.00e-33	134.00
IUUC-Eca-033306	Equus caballus	42.52	3.00e-74	270.00
IUUC-Fca-035579	Felis catus	43.57	6.00e-75	272.00
IUUC-Fal-037582	Ficedula albicollis	43.86	6.00e-75	271.00
IUUC-Fox-037772	Fusarium oxysporum	52.34	3.00e-104	369.00
IUUC-Fso-038368	Fusarium solani	53.08	6.00e-106	375.00
IUUC-Gmo-038500	Gadus morhua	43.90	8.00e-74	268.00
IUUC-Ggr-040019	Gaeumannomyces graminis	51.46	3.00e-107	379.00
IUUC-Gga-040684	Gallus gallus	43.86	2.00e-74	270.00
IUUC-Gac-042592	Gasterosteus aculeatus	42.40	3.00e-73	266.00
IUUC-Gma-043437	Glycine max	44.44	2.00e-81	293.00
IUUC-Ggo-044965	Gorilla gorilla	43.57	1.00e-74	271.00
IUUC-Hsa-046779	Homo sapiens	44.41	4.00e-72	263.00
IUUC-Hvu-047380	Hordeum vulgare	45.42	7.00e-79	285.00
IUUC-Itr-048819	Ictidomys tridecemlineatus	43.57	7.00e-75	271.00
IUUC-Lch-050559	Latimeria chalumnae	39.07	7.00e-65	238.00
IUUC-Lpe-051050	Leersia perrieri	45.40	5.00e-85	305.00
IUUC-Loc-052874	Lepisosteus oculatus	43.60	1.00e-75	274.00
IUUC-Lma-053085	Leptosphaeria maculans	48.40	9.00e-96	341.00
IUUC-Laf-053980	Loxodonta africana	43.57	6.00e-75	271.00
IUUC-Mcc-055408	Macaca mulatta	43.57	6.00e-75	272.00
IUUC-Meu-056551	Macropus eugenii	41.23	4.00e-65	239.00
IUUC-Mor-057248	Magnaporthe oryzae	53.64	2.00e-112	396.00
IUUC-Mpo-057390	Magnaporthe poae	50.56	2.00e-106	377.00
IUUC-Mtr-058608	Medicago truncatula	43.45	4.00e-79	285.00
IUUC-Mla-059155	Melampsora laricipopulina	41.92	5.00e-85	305.00
IUUC-Mga-060140	Meleagris gallopavo	44.98	3.00e-68	249.00
IUUC-Mvi-060264	Microbotryum violaceum	49.70	9.00e-92	327.00
IUUC-Mmr-061533	Microcebus murinus	43.57	7.00e-75	271.00
IUUC-Mdo-062593	Monodelphis domestica	43.57	2.00e-74	270.00
IUUC-Mmu-063362	Mus musculus	43.27	1.00e-74	271.00
IUUC-Mac-064968	Musa acuminata	40.77	8.00e-74	268.00
IUUC-Mpu-065722	Mustela putorius furo	43.27	2.00e-74	270.00
IUUC-Mlu-068124	Myotis lucifugus	43.57	6.00e-75	271.00
IUUC-Nfi-068595	Neosartorya fischeri	53.55	1.00e-108	384.00
IUUC-Ncr-068790	Neurospora crassa	51.69	2.00e-107	380.00
IUUC-Nle-069273	Nomascus leucogenys	38.76	8.00e-55	204.00
IUUC-Opr-070320	Ochotona princeps	39.18	2.00e-64	236.00
IUUC-Ont-071303	Oreochromis niloticus	43.60	6.00e-74	268.00
IUUC-Oan-073724	Ornithorhynchus anatinus	43.57	5.00e-74	268.00
IUUC-Ocu-074961	Oryctolagus cuniculus	42.81	3.00e-72	263.00
IUUC-Oba-075250	Oryza barthii	44.94	1.00e-83	301.00
IUUC-Obr-076326	Oryza brachyantha	45.40	6.00e-85	305.00
IUUC-Ogl-077767	Oryza glaberrima	45.40	5.00e-85	305.00
IUUC-Ogu-078760	Oryza glumaepatula	44.94	1.00e-83	301.00
IUUC-Oin-080219	Oryza indica	45.40	5.00e-85	305.00
IUUC-Olo-081007	Oryza longistaminata	45.40	5.00e-85	305.00
IUUC-Ome-081848	Oryza meridionalis	42.30	5.00e-80	288.00
IUUC-Oni-082844	Oryza nivara	45.40	5.00e-85	305.00
IUUC-Opu-083511	Oryza punctata	42.29	1.00e-79	287.00
IUUC-Oru-085012	Oryza rufipogon	45.40	5.00e-85	305.00
IUUC-Osa-085287	Oryza sativa	45.40	5.00e-85	305.00
IUUC-Ola-087292	Oryzias latipes	43.60	2.00e-74	270.00
IUUC-Olu-087689	Ostreococcus lucimarinus	45.37	2.00e-85	306.00
IUUC-Oga-088821	Otolemur garnettii	43.57	6.00e-75	272.00
IUUC-Oar-090253	Ovis aries	43.57	6.00e-75	272.00
IUUC-Ptr-091097	Pan troglodytes	42.98	1.00e-73	268.00
IUUC-Pan-091835	Papio anubis	43.57	6.00e-75	271.00
IUUC-Psi-093000	Pelodiscus sinensis	44.15	4.00e-75	272.00
IUUC-Pma-094273	Petromyzon marinus	42.11	3.00e-72	263.00
IUUC-Pno-094920	Phaeosphaeria nodorum	46.03	2.00e-89	320.00
IUUC-Ppa-096018	Physcomitrella patens	40.56	1.00e-63	234.00
IUUC-Pfo-096388	Poecilia formosa	43.60	8.00e-75	271.00
IUUC-Pab-097533	Pongo abelii	43.57	6.00e-75	271.00
IUUC-Pop-099348	Populus trichocarpa	43.85	9.00e-76	274.00
IUUC-Pca-100326	Procavia capensis	40.28	3.00e-41	159.00
IUUC-Ppe-101817	Prunus persica	44.28	5.00e-82	295.00
IUUC-Pva-102233	Pteropus vampyrus	43.57	1.00e-75	274.00
IUUC-Pgr-103342	Puccinia graminis	45.45	5.00e-89	318.00
IUUC-Ptt-103836	Puccinia triticina	44.50	1.00e-88	317.00
IUUC-Pte-104387	Pyrenophora teres	48.40	1.00e-94	337.00
IUUC-Pyt-104737	Pyrenophora triticirepentis	46.11	8.00e-94	334.00
IUUC-Rno-105548	Rattus norvegicus	42.98	3.00e-74	270.00
IUUC-Sce-106379	Saccharomyces cerevisiae	56.01	2.00e-123	432.00
IUUC-Sha-107617	Sarcophilus harrisii	46.15	1.00e-55	207.00
IUUC-Sja-107668	Schizosaccharomyces japonicus	55.38	2.00e-111	393.00
IUUC-Spo-108293	Schizosaccharomyces pombe	55.49	1.00e-116	410.00
IUUC-Ssl-108521	Sclerotinia sclerotiorum	24.11	5.00e-22	95.90
IUUC-Smo-109611	Selaginella moellendorffii	44.98	9.00e-86	308.00
IUUC-Sit-110436	Setaria italica	45.86	3.00e-87	312.00
IUUC-Sly-111037	Solanum lycopersicum	45.51	5.00e-85	305.00
IUUC-Stu-112371	Solanum tuberosum	39.02	4.00e-61	226.00
IUUC-Sar-113159	Sorex araneus	31.13	4.00e-22	95.90
IUUC-Sbi-113852	Sorghum bicolor	45.82	4.00e-83	299.00
IUUC-Sre-114922	Sporisorium reilianum	36.60	3.00e-63	233.00
IUUC-Ssc-116305	Sus scrofa	43.57	5.00e-75	272.00
IUUC-Tgu-116751	Taeniopygia guttata	44.48	8.00e-75	271.00
IUUC-Tru-117798	Takifugu rubripes	43.02	4.00e-74	269.00
IUUC-Tsy-119523	Tarsius syrichta	45.52	3.00e-67	246.00
IUUC-Tni-120477	Tetraodon nigroviridis	43.64	3.00e-74	269.00
IUUC-Tca-121802	Theobroma cacao	42.34	1.00e-78	284.00
IUUC-Tre-121994	Trichoderma reesei	53.08	7.00e-105	371.00
IUUC-Tvi-122631	Trichoderma virens	52.49	2.00e-104	369.00
IUUC-Tae-124794	Triticum aestivum	45.10	3.00e-78	283.00
IUUC-Tur-126390	Triticum urartu	44.85	1.00e-83	300.00
IUUC-Tme-127152	Tuber melanosporum	55.95	1.00e-108	383.00
IUUC-Tbe-127319	Tupaia belangeri	33.60	4.00e-37	146.00
IUUC-Ttr-129207	Tursiops truncatus	43.11	2.00e-73	267.00
IUUC-Uma-129342	Ustilago maydis	36.60	1.00e-56	211.00
IUUC-Vda-129865	Verticillium dahliae	50.88	1.00e-103	367.00
IUUC-Vpa-130076	Vicugna pacos	40.13	6.00e-56	208.00
IUUC-Vvi-131104	Vitis vinifera	42.02	3.00e-80	289.00
IUUC-Xtr-132917	Xenopus tropicalis	36.63	4.00e-49	186.00
IUUC-Xma-133615	Xiphophorus maculatus	43.60	8.00e-75	271.00
IUUC-Yli-134431	Yarrowia lipolytica	58.02	2.00e-123	433.00
IUUC-Zma-135142	Zea mays	45.26	4.00e-83	299.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence