iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ata-000771

Ensembl Protein ID

EMT32438

UniProt Accession

M8CE21; M8CE21_AEGTA

Genbank Protein ID

EMT32438.1

Protein Name

U4/U6 small nuclear ribonucleoprotein PRP4-like protein

Genbank Nucleotide ID

KD501831

Gene Name

F775_19450

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
F775_19450	EMT32438	EMT32438

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.30e-39	131.3	263	299
UBD/Beta-Prp	6.20e-65	220.1	139	360

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH+ sv++++f +d  l +s++ D + +vWDlr+g+l
   Q: 263  GHSRSVYGVSFhPDgSLAASCGLDANARVWDLRSGRL 299
           8***********998999*****************97 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdkl 109
           ++ ++t   fs+d s+lat+s++g +kvw++ + +++++l+gh++  t+v fsp ++ l+t+s D+t+k+w+  +g+ ++++ gh d++  ++f+psg++l
   Q: 139  DDRPLTGCSFSRDASMLATSSWSGILKVWSMPQITKIATLKGHTERATDVAFSPVDNCLATASADKTAKLWNS-DGSLLMSFDGHLDRLARVAFHPSGKYL 238
           6789999****************************************************************96.689************************ PP
   S: 110  vsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlq 210
            ++s d+t r+wd++tg++l  +++gh+++v +v++hpdg+l +s++lD   r+Wdl++g+l  tl g h ++v  + f++ng  ++++s+d+  ++wdl+
   Q: 239  GTASFDKTWRLWDINTGTELL-LQEGHSRSVYGVSFHPDGSLAASCGLDANARVWDLRSGRLYCTLIG-HVKPVLGVGFSPNGHLVATASEDNFCRIWDLR 337
           *********************.*********************************************9.******************************** PP
   S: 211  tgecvrtlnghtdnvksvrfspn 233
           t +++++  +h++ ++ v+f p+
   Q: 338  TRQMLYSIPAHKSLISHVKFEPQ 360
           *******************9976 PP

Organism

Aegilops tauschii

Protein Sequence
(Fasta)

MAVPTNDSAV RARLRRLGEP ITLFGEREME RRDRLRALMV RLEADGQFDR LLRVQEDEQG 60
APGDDDDMEQ IQYPFFTEGT NQLLQARVDI AMYSLPRAKA RVDRAKRRLA DLDEDPEAEA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCGTGC CCACCAACGA CTCCGCCGTG CGCGCGCGCC TCCGCCGTCT CGGCGAGCCC 60
ATCACGCTCT TCGGCGAGCG CGAGATGGAG CGCCGCGACC GCCTACGCGC ACTCATGGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0687--Ribonucleoprotein
KW-0543--Viral nucleoprotein
KW-0946--Virion
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0030529--C:intracellular ribonucleoprotein complex
GO:0019013--C:viral nucleocapsid

KEGG

ats:F775_19450

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001737	Ailuropoda melanoleuca	44.63	5.00e-104	370.00
IUUC-Atr-002828	Amborella trichopoda	63.82	9.00e-163	565.00
IUUC-Apl-003723	Anas platyrhynchos	44.72	2.00e-104	372.00
IUUC-Aca-004972	Anolis carolinensis	44.91	8.00e-103	367.00
IUUC-Aly-006531	Arabidopsis lyrata	66.20	5.00e-156	543.00
IUUC-Ath-007367	Arabidopsis thaliana	64.65	3.00e-168	583.00
IUUC-Ago-007893	Ashbya gossypii	33.02	7.00e-55	207.00
IUUC-Ame-011697	Astyanax mexicanus	43.22	2.00e-102	365.00
IUUC-Bta-012615	Bos taurus	44.39	1.00e-103	369.00
IUUC-Bdi-014302	Brachypodium distachyon	91.69	0.00e+00	772.00
IUUC-Bol-015594	Brassica oleracea	67.46	5.00e-159	553.00
IUUC-Bra-017465	Brassica rapa	66.98	3.00e-158	551.00
IUUC-Cja-019747	Callithrix jacchus	44.63	3.00e-104	371.00
IUUC-Cfa-020288	Canis familiaris	44.63	3.00e-104	371.00
IUUC-Cpo-021440	Cavia porcellus	44.39	1.00e-102	366.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	50.42	2.00e-91	328.00
IUUC-Csa-023139	Chlorocebus sabaeus	49.83	2.00e-87	315.00
IUUC-Cho-024481	Choloepus hoffmanni	43.79	6.00e-102	363.00
IUUC-Cin-025106	Ciona intestinalis	41.40	7.00e-93	333.00
IUUC-Csv-026087	Ciona savignyi	41.03	2.00e-90	325.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	37.58	2.00e-78	286.00
IUUC-Dre-028723	Danio rerio	44.14	7.00e-104	370.00
IUUC-Dno-029299	Dasypus novemcinctus	44.39	9.00e-104	370.00
IUUC-Dse-031562	Dothistroma septosporum	35.44	9.00e-71	260.00
IUUC-Ete-032669	Echinops telfairi	44.76	1.00e-104	372.00
IUUC-Eca-033566	Equus caballus	44.63	4.00e-104	370.00
IUUC-Eeu-034524	Erinaceus europaeus	48.72	6.00e-67	247.00
IUUC-Fca-036215	Felis catus	44.63	4.00e-104	370.00
IUUC-Fal-037018	Ficedula albicollis	42.86	2.00e-85	308.00
IUUC-Fox-037936	Fusarium oxysporum	35.76	3.00e-70	258.00
IUUC-Gmo-038966	Gadus morhua	42.94	4.00e-80	290.00
IUUC-Ggr-039942	Gaeumannomyces graminis	36.67	1.00e-71	263.00
IUUC-Gga-040797	Gallus gallus	44.72	1.00e-104	373.00
IUUC-Gac-042598	Gasterosteus aculeatus	44.26	2.00e-95	342.00
IUUC-Gma-044220	Glycine max	66.67	1.00e-155	542.00
IUUC-Ggo-044682	Gorilla gorilla	44.63	5.00e-104	370.00
IUUC-Hsa-045804	Homo sapiens	44.63	4.00e-104	371.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	44.86	1.00e-104	372.00
IUUC-Kpa-049369	Komagataella pastoris	34.08	1.00e-53	203.00
IUUC-Lch-050074	Latimeria chalumnae	43.49	1.00e-92	333.00
IUUC-Lpe-051333	Leersia perrieri	87.53	0.00e+00	694.00
IUUC-Loc-052164	Lepisosteus oculatus	43.91	2.00e-103	368.00
IUUC-Lma-053088	Leptosphaeria maculans	38.38	8.00e-73	267.00
IUUC-Laf-053460	Loxodonta africana	44.63	4.00e-104	371.00
IUUC-Mcc-055859	Macaca mulatta	44.63	4.00e-104	370.00
IUUC-Meu-056134	Macropus eugenii	44.16	6.00e-104	370.00
IUUC-Mor-057251	Magnaporthe oryzae	38.10	4.00e-79	288.00
IUUC-Mpo-057375	Magnaporthe poae	41.04	2.00e-50	191.00
IUUC-Mla-059145	Melampsora laricipopulina	41.86	4.00e-84	304.00
IUUC-Mga-059855	Meleagris gallopavo	44.72	1.00e-104	372.00
IUUC-Mvi-060372	Microbotryum violaceum	40.85	4.00e-77	281.00
IUUC-Mmr-060826	Microcebus murinus	44.86	2.00e-104	372.00
IUUC-Mdo-062748	Monodelphis domestica	43.93	6.00e-103	367.00
IUUC-Mmu-063351	Mus musculus	44.63	6.00e-104	370.00
IUUC-Mac-064846	Musa acuminata	73.00	9.00e-175	605.00
IUUC-Mpu-066006	Mustela putorius furo	44.63	4.00e-104	370.00
IUUC-Mlu-067722	Myotis lucifugus	44.86	1.00e-104	372.00
IUUC-Nle-069982	Nomascus leucogenys	44.63	3.00e-104	371.00
IUUC-Opr-070596	Ochotona princeps	44.39	8.00e-104	370.00
IUUC-Ont-072374	Oreochromis niloticus	45.01	6.00e-102	363.00
IUUC-Oan-073166	Ornithorhynchus anatinus	45.63	4.00e-91	327.00
IUUC-Ocu-074371	Oryctolagus cuniculus	44.39	1.00e-103	369.00
IUUC-Oba-075083	Oryza barthii	88.45	0.00e+00	723.00
IUUC-Obr-076405	Oryza brachyantha	86.84	0.00e+00	711.00
IUUC-Ogl-077683	Oryza glaberrima	88.45	0.00e+00	723.00
IUUC-Ogu-078486	Oryza glumaepatula	87.76	0.00e+00	722.00
IUUC-Oin-079679	Oryza indica	87.53	0.00e+00	742.00
IUUC-Olo-080243	Oryza longistaminata	87.90	0.00e+00	670.00
IUUC-Ome-081230	Oryza meridionalis	87.53	0.00e+00	742.00
IUUC-Oni-082961	Oryza nivara	87.53	0.00e+00	742.00
IUUC-Opu-083189	Oryza punctata	87.99	0.00e+00	725.00
IUUC-Oru-084353	Oryza rufipogon	87.53	0.00e+00	741.00
IUUC-Osa-085458	Oryza sativa	87.53	0.00e+00	742.00
IUUC-Ola-086940	Oryzias latipes	45.94	3.00e-104	371.00
IUUC-Olu-087580	Ostreococcus lucimarinus	42.95	1.00e-73	270.00
IUUC-Oga-088703	Otolemur garnettii	42.62	2.00e-98	352.00
IUUC-Oar-089829	Ovis aries	44.63	6.00e-104	370.00
IUUC-Ptr-090838	Pan troglodytes	44.63	4.00e-104	371.00
IUUC-Pan-092261	Papio anubis	44.52	2.00e-102	365.00
IUUC-Psi-093020	Pelodiscus sinensis	43.91	3.00e-103	368.00
IUUC-Pma-094319	Petromyzon marinus	31.05	3.00e-34	138.00
IUUC-Pno-094858	Phaeosphaeria nodorum	39.56	3.00e-74	271.00
IUUC-Ppa-095531	Physcomitrella patens	60.41	7.00e-147	513.00
IUUC-Pfo-096812	Poecilia formosa	42.03	4.00e-87	314.00
IUUC-Pab-097805	Pongo abelii	45.66	4.00e-87	314.00
IUUC-Pop-100051	Populus trichocarpa	66.51	9.00e-157	546.00
IUUC-Pca-100152	Procavia capensis	44.63	5.00e-104	370.00
IUUC-Ppe-101244	Prunus persica	64.91	2.00e-155	541.00
IUUC-Pva-102529	Pteropus vampyrus	42.52	3.00e-95	341.00
IUUC-Pgr-103550	Puccinia graminis	38.09	2.00e-85	308.00
IUUC-Ptt-103951	Puccinia triticina	34.15	6.00e-70	257.00
IUUC-Pte-104151	Pyrenophora teres	36.84	6.00e-66	244.00
IUUC-Rno-105747	Rattus norvegicus	44.63	7.00e-104	370.00
IUUC-Sce-106418	Saccharomyces cerevisiae	32.63	2.00e-60	225.00
IUUC-Sha-107334	Sarcophilus harrisii	44.16	7.00e-104	370.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	36.28	2.00e-63	235.00
IUUC-Spo-108189	Schizosaccharomyces pombe	40.37	4.00e-86	311.00
IUUC-Smo-108924	Selaginella moellendorffii	57.81	3.00e-144	504.00
IUUC-Sit-110102	Setaria italica	86.67	0.00e+00	714.00
IUUC-Sly-111668	Solanum lycopersicum	67.74	1.00e-159	555.00
IUUC-Stu-111928	Solanum tuberosum	67.97	2.00e-160	558.00
IUUC-Sar-113266	Sorex araneus	44.54	1.00e-89	322.00
IUUC-Sbi-114134	Sorghum bicolor	87.36	0.00e+00	718.00
IUUC-Sre-115114	Sporisorium reilianum	41.39	3.00e-85	308.00
IUUC-Ssc-115443	Sus scrofa	44.63	5.00e-104	370.00
IUUC-Tgu-117157	Taeniopygia guttata	44.50	5.00e-105	374.00
IUUC-Tru-118587	Takifugu rubripes	45.60	8.00e-105	373.00
IUUC-Tsy-119157	Tarsius syrichta	46.22	1.00e-93	336.00
IUUC-Tni-120427	Tetraodon nigroviridis	44.70	2.00e-104	371.00
IUUC-Tca-121368	Theobroma cacao	67.59	2.00e-167	581.00
IUUC-Tre-122074	Trichoderma reesei	36.70	2.00e-76	278.00
IUUC-Tvi-122349	Trichoderma virens	35.76	5.00e-75	274.00
IUUC-Tae-125651	Triticum aestivum	100.00	0.00e+00	838.00
IUUC-Tur-126532	Triticum urartu	97.33	0.00e+00	739.00
IUUC-Tbe-128136	Tupaia belangeri	40.65	8.00e-89	320.00
IUUC-Ttr-129169	Tursiops truncatus	38.99	2.00e-49	189.00
IUUC-Uma-129399	Ustilago maydis	39.39	2.00e-81	295.00
IUUC-Vda-129842	Verticillium dahliae	38.23	3.00e-82	298.00
IUUC-Vpa-130440	Vicugna pacos	44.63	2.00e-104	372.00
IUUC-Vvi-131075	Vitis vinifera	66.74	3.00e-160	557.00
IUUC-Xtr-132612	Xenopus tropicalis	32.38	2.00e-41	162.00
IUUC-Xma-133002	Xiphophorus maculatus	46.52	1.00e-90	325.00
IUUC-Yli-134569	Yarrowia lipolytica	36.78	2.00e-69	255.00
IUUC-Zma-135799	Zea mays	82.83	0.00e+00	722.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence