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Tag Content
UUCD2 ID IUUC-Sbi-114061
UUCD1 version UUC-SoB-00303
Ensembl Protein ID Sb01g008280.1
UniProt Accession C5X165; C5X165_SORBI
Genbank Protein ID EER90882.1
Protein Name tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; WD repeat-containing protein 4 homolog
Genbank Nucleotide ID CM000760
Gene Name SORBI_001G091900
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
Sb01g008280 Sb01g008280.1 Sb01g008280.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.90e-15 57.2 200 240
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sd..tllvsGsdDgtikvWDlrtgvll 36
           gHtd v+c+ f   s+   +lvsG++D t+++WD+  g ll
   Q: 200  GHTDFVSCITFtsiSEtqSFLVSGGGDSTVRLWDYVNGCLL 240
           8*************443578**************9988876 PP
   
Organism Sorghum bicolor
Functional Description
(View)

Functional Description


     Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit.
 Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit.
Protein Sequence
(Fasta)
MEDTAVEEPE VSGAAEFAPA LVAAHPQGNS VAVAIGPELR AFDLSAGLPV SLSDDCGGRS 60
HSDAIRAICF SVSGALFASA GDDKLVKVWK TDSWRCIQTI TSEKRVSAVA ISNDDLYVTF 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Sbi-114061|E3,WD_repeat|Sorghum bicolor
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GTGCGAACTG CCCGTAAACC CTAATCCCTG AATCCCTCCC CGCCTCCTCC GCCTCGCGCT 60
CGATTCGAAT CCGAGCTCCC TATCTTGCGG CTGCTGCTCC CGCCTCCCGC TGCAAGCCTG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Sbi-114061|E3,WD_repeat|Sorghum bicolor
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0819--tRNA processing
KW-0853--WD repeat
Interpro

IPR028884--Trm82
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0043527--C:tRNA methyltransferase complex
GO:0036265--P:RNA (guanine-N7)-methylation
GO:0030488--P:tRNA methylation
KEGG sbi:SORBI_01g008280
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000556 Aegilops tauschii 75.66 4.00e-161 560.00
IUUC-Atr-002431 Amborella trichopoda 57.39 8.00e-34 134.00
IUUC-Apl-003975 Anas platyrhynchos 32.02 5.00e-25 107.00
IUUC-Aca-005170 Anolis carolinensis 29.84 1.00e-19 90.10
IUUC-Aly-005769 Arabidopsis lyrata 51.73 1.00e-116 411.00
IUUC-Ath-006733 Arabidopsis thaliana 52.01 1.00e-111 395.00
IUUC-Acl-008151 Aspergillus clavatus 25.37 4.00e-13 68.60
IUUC-Ame-010613 Astyanax mexicanus 32.81 1.00e-22 100.00
IUUC-Bgr-012067 Blumeria graminis 36.36 3.00e-15 75.90
IUUC-Bta-012788 Bos taurus 30.43 1.00e-22 100.00
IUUC-Bdi-014458 Brachypodium distachyon 81.29 4.00e-179 619.00
IUUC-Bol-016398 Brassica oleracea 50.46 5.00e-110 390.00
IUUC-Bra-016644 Brassica rapa 50.57 4.00e-108 385.00
IUUC-Cpo-021963 Cavia porcellus 36.16 1.00e-21 96.70
IUUC-Csa-024148 Chlorocebus sabaeus 36.18 4.00e-17 81.60
IUUC-Cne-026834 Cryptococcus neoformans 30.17 3.00e-17 82.40
IUUC-Dre-028427 Danio rerio 36.44 3.00e-25 108.00
IUUC-Dor-030522 Dipodomys ordii 32.00 9.00e-24 103.00
IUUC-Dme-032136 Drosophila melanogaster 38.78 6.00e-14 71.20
IUUC-Fca-035833 Felis catus 30.20 5.00e-21 94.40
IUUC-Fal-037497 Ficedula albicollis 32.02 9.00e-24 103.00
IUUC-Gga-040547 Gallus gallus 31.23 2.00e-22 99.00
IUUC-Gac-041761 Gasterosteus aculeatus 27.53 2.00e-20 92.40
IUUC-Gma-043722 Glycine max 50.00 2.00e-104 372.00
IUUC-Ggo-045340 Gorilla gorilla 37.09 9.00e-16 77.00
IUUC-Hsa-046403 Homo sapiens 38.16 2.00e-17 82.40
IUUC-Hvu-047643 Hordeum vulgare 80.24 8.00e-180 622.00
IUUC-Itr-048103 Ictidomys tridecemlineatus 32.27 1.00e-23 103.00
IUUC-Kpa-049283 Komagataella pastoris 38.13 7.00e-17 80.90
IUUC-Lch-050682 Latimeria chalumnae 31.18 5.00e-25 107.00
IUUC-Lpe-050712 Leersia perrieri 80.37 0.00e+00 663.00
IUUC-Loc-052599 Lepisosteus oculatus 33.73 1.00e-29 122.00
IUUC-Laf-054390 Loxodonta africana 37.23 3.00e-25 108.00
IUUC-Mcc-054747 Macaca mulatta 36.18 3.00e-17 82.00
IUUC-Mtr-058600 Medicago truncatula 49.41 3.00e-108 384.00
IUUC-Mla-059135 Melampsora laricipopulina 27.39 3.00e-18 85.50
IUUC-Mga-059876 Meleagris gallopavo 32.26 5.00e-23 100.00
IUUC-Mmr-061518 Microcebus murinus 31.23 3.00e-21 95.10
IUUC-Mac-065417 Musa acuminata 56.72 1.00e-123 435.00
IUUC-Nle-069914 Nomascus leucogenys 34.21 8.00e-14 70.50
IUUC-Ont-071555 Oreochromis niloticus 32.58 7.00e-20 90.90
IUUC-Oan-072951 Ornithorhynchus anatinus 31.13 8.00e-24 103.00
IUUC-Ocu-074679 Oryctolagus cuniculus 39.19 9.00e-19 87.00
IUUC-Oba-075355 Oryza barthii 74.88 1.00e-177 615.00
IUUC-Obr-076769 Oryza brachyantha 79.91 0.00e+00 696.00
IUUC-Ogl-077168 Oryza glaberrima 81.06 0.00e+00 680.00
IUUC-Ogu-078275 Oryza glumaepatula 74.40 6.00e-176 609.00
IUUC-Oin-079207 Oryza indica 81.06 0.00e+00 680.00
IUUC-Ome-081169 Oryza meridionalis 79.23 4.00e-90 324.00
IUUC-Oni-082437 Oryza nivara 74.76 2.00e-175 607.00
IUUC-Opu-084031 Oryza punctata 81.77 0.00e+00 684.00
IUUC-Oru-084380 Oryza rufipogon 74.64 9.00e-177 612.00
IUUC-Osa-085327 Oryza sativa 80.82 0.00e+00 677.00
IUUC-Ola-086716 Oryzias latipes 32.26 9.00e-22 97.10
IUUC-Olu-087708 Ostreococcus lucimarinus 35.25 4.00e-35 141.00
IUUC-Oar-090239 Ovis aries 30.43 1.00e-22 100.00
IUUC-Ptr-090851 Pan troglodytes 37.75 3.00e-16 78.60
IUUC-Pan-092558 Papio anubis 36.18 4.00e-17 81.60
IUUC-Psi-093792 Pelodiscus sinensis 28.74 3.00e-21 95.10
IUUC-Ppa-095757 Physcomitrella patens 41.10 9.00e-76 276.00
IUUC-Pfo-096465 Poecilia formosa 30.12 9.00e-20 90.50
IUUC-Pab-097722 Pongo abelii 37.58 6.00e-17 81.30
IUUC-Pop-098979 Populus trichocarpa 52.48 2.00e-112 398.00
IUUC-Pca-100753 Procavia capensis 43.69 1.00e-14 73.20
IUUC-Ppe-101515 Prunus persica 55.73 2.00e-122 431.00
IUUC-Sja-107780 Schizosaccharomyces japonicus 27.38 2.00e-18 85.90
IUUC-Spo-108251 Schizosaccharomyces pombe 27.00 9.00e-20 90.50
IUUC-Smo-108938 Selaginella moellendorffii 40.72 3.00e-72 265.00
IUUC-Sit-110020 Setaria italica 90.55 0.00e+00 738.00
IUUC-Sly-111543 Solanum lycopersicum 51.95 3.00e-117 414.00
IUUC-Stu-111925 Solanum tuberosum 50.69 2.00e-117 414.00
IUUC-Tgu-117321 Taeniopygia guttata 32.13 5.00e-21 94.40
IUUC-Tru-118454 Takifugu rubripes 29.49 7.00e-24 103.00
IUUC-Tni-119894 Tetraodon nigroviridis 32.82 9.00e-22 97.10
IUUC-Tca-121746 Theobroma cacao 52.75 1.00e-118 419.00
IUUC-Tae-123054 Triticum aestivum 80.34 4.00e-179 619.00
IUUC-Tur-126254 Triticum urartu 74.81 1.00e-149 521.00
IUUC-Tbe-127683 Tupaia belangeri 50.67 6.00e-14 70.90
IUUC-Ttr-129056 Tursiops truncatus 35.64 4.00e-23 101.00
IUUC-Vvi-131428 Vitis vinifera 52.29 3.00e-122 431.00
IUUC-Xma-133605 Xiphophorus maculatus 30.86 1.00e-18 86.30
Created Date 25-Jun-2017

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