iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Xtr-132668

Ensembl Protein ID

ENSXETP00000006377.3

UniProt Accession

F7ECA7; F7ECA7_XENTR

Genbank Protein ID

ENSXETP00000006377

Protein Name

Chromodomain helicase DNA-binding protein 5

Genbank Nucleotide ID

AAMC01071563

Gene Name

chd5

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSXETG00000002904.3	ENSXETT00000006377.3	ENSXETP00000006377.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	4.10e-17	62.3	278	323

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl ++  e+ p+ + w Cp C++
   Q: 278  DYCEVCQQGGE----IILCDTCPRAYHLVCLDPE-LEKAPEGK-WSCPHCKR 323
           79*********....9******************.*******7.******85 PP

Organism

Xenopus tropicalis

Protein Sequence
(Fasta)

SDADVSENED ELEEKSESEG SDYAPNVKRK MTMRIMKKKQ SKRKMFSFGK QHKQAKEPKS 60
SAQLMEEWGL DNVDYAFSEE DYHTLTNYKA FSQFLRPLIA KKNPKIPMSK MMTVLGAKWR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTGATGCGG ATGTGTCAGA AAATGAAGAT GAGCTTGAGG AAAAGTCAGA AAGTGAAGGA 60
AGTGATTATG CTCCCAACAA AAAGAAGAAG AAAAAACTTA AAGAAAAAAA AGAAAAAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001701	Ailuropoda melanoleuca	78.45	0.00e+00	2561.00
IUUC-Apl-003406	Anas platyrhynchos	78.39	0.00e+00	1999.00
IUUC-Aca-004671	Anolis carolinensis	76.94	0.00e+00	2399.00
IUUC-Aly-005645	Arabidopsis lyrata	43.50	1.00e-142	501.00
IUUC-Ath-007406	Arabidopsis thaliana	38.82	4.00e-143	503.00
IUUC-Ame-011883	Astyanax mexicanus	74.20	0.00e+00	2475.00
IUUC-Bol-016073	Brassica oleracea	39.77	3.00e-144	507.00
IUUC-Bra-016724	Brassica rapa	40.12	1.00e-145	511.00
IUUC-Cel-018108	Caenorhabditis elegans	57.18	0.00e+00	1265.00
IUUC-Cja-019018	Callithrix jacchus	70.56	0.00e+00	2281.00
IUUC-Cfa-021063	Canis familiaris	78.46	0.00e+00	2538.00
IUUC-Cpo-022083	Cavia porcellus	78.48	0.00e+00	2529.00
IUUC-Csa-023084	Chlorocebus sabaeus	78.92	0.00e+00	2641.00
IUUC-Cho-024361	Choloepus hoffmanni	72.96	0.00e+00	1160.00
IUUC-Csv-025847	Ciona savignyi	58.54	0.00e+00	1302.00
IUUC-Dre-028226	Danio rerio	76.45	0.00e+00	2335.00
IUUC-Dno-029656	Dasypus novemcinctus	77.97	0.00e+00	1735.00
IUUC-Dme-032150	Drosophila melanogaster	61.49	0.00e+00	1383.00
IUUC-Eca-034372	Equus caballus	79.08	0.00e+00	2543.00
IUUC-Fca-036048	Felis catus	78.73	0.00e+00	2546.00
IUUC-Fal-037282	Ficedula albicollis	78.31	0.00e+00	2563.00
IUUC-Gmo-038957	Gadus morhua	73.14	0.00e+00	1314.00
IUUC-Gga-040607	Gallus gallus	80.65	0.00e+00	2174.00
IUUC-Gma-043999	Glycine max	40.93	0.00e+00	707.00
IUUC-Ggo-044514	Gorilla gorilla	78.60	0.00e+00	2623.00
IUUC-Hsa-046181	Homo sapiens	78.76	0.00e+00	2617.00
IUUC-Loc-052795	Lepisosteus oculatus	78.00	0.00e+00	2433.00
IUUC-Laf-053749	Loxodonta africana	80.31	0.00e+00	2181.00
IUUC-Mcc-055856	Macaca mulatta	78.63	0.00e+00	2631.00
IUUC-Mga-059630	Meleagris gallopavo	79.19	0.00e+00	2432.00
IUUC-Mmu-063644	Mus musculus	77.96	0.00e+00	2585.00
IUUC-Nle-069824	Nomascus leucogenys	77.42	0.00e+00	2409.00
IUUC-Ont-072647	Oreochromis niloticus	75.79	0.00e+00	2305.00
IUUC-Oan-072885	Ornithorhynchus anatinus	68.16	0.00e+00	2090.00
IUUC-Ola-086961	Oryzias latipes	74.98	0.00e+00	2244.00
IUUC-Oga-088775	Otolemur garnettii	80.71	0.00e+00	2441.00
IUUC-Oar-090301	Ovis aries	79.35	0.00e+00	2321.00
IUUC-Ptr-090586	Pan troglodytes	77.53	0.00e+00	2586.00
IUUC-Pan-092282	Papio anubis	78.84	0.00e+00	2607.00
IUUC-Psi-093007	Pelodiscus sinensis	79.28	0.00e+00	2092.00
IUUC-Ppa-095213	Physcomitrella patens	45.56	0.00e+00	652.00
IUUC-Pfo-096802	Poecilia formosa	76.74	0.00e+00	2071.00
IUUC-Pab-097677	Pongo abelii	81.85	0.00e+00	2147.00
IUUC-Pca-100559	Procavia capensis	75.70	0.00e+00	1997.00
IUUC-Pva-103186	Pteropus vampyrus	75.98	0.00e+00	1720.00
IUUC-Rno-105378	Rattus norvegicus	77.53	0.00e+00	2561.00
IUUC-Smo-108946	Selaginella moellendorffii	38.41	5.00e-146	513.00
IUUC-Sly-110976	Solanum lycopersicum	41.43	0.00e+00	694.00
IUUC-Tgu-116779	Taeniopygia guttata	76.70	0.00e+00	2386.00
IUUC-Tru-117597	Takifugu rubripes	76.38	0.00e+00	2308.00
IUUC-Tsy-119261	Tarsius syrichta	72.79	0.00e+00	1313.00
IUUC-Ttr-128301	Tursiops truncatus	80.02	0.00e+00	2432.00
IUUC-Vvi-130849	Vitis vinifera	41.52	0.00e+00	695.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence